Clone Name | rbart44d06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 319 bits (161), Expect = 4e-84 Identities = 367/435 (84%), Gaps = 3/435 (0%) Strand = Plus / Minus Query: 1 ccttgcaaacataaggaaccccctttatttttctttatcggagcacaccatccatacata 60 ||||||||||||| || | |||||||||||||| | | |||| |||||||||||||| Sbjct: 1259 ccttgcaaacatagggcagtgcctttatttttcttcagcaaagcaaaccatccatacata 1200 Query: 61 aacaaagcacactgcaagggtacttcagagtatcccttgttagataaacttttgagaaag 120 || ||||||||||| ||||||||| |||||| |||| ||||||||||| |||| Sbjct: 1199 aataaagcacactgaaagggtactaaagagtacaacttg---gataaacttttatgaaac 1143 Query: 121 gctttacttgtagacctcgatgacacctcgtgcacccattttcttgataattttgtagtc 180 || |||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 1142 cgttcacttgtagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtc 1083 Query: 181 ggtgaaccctgctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccct 240 | | |||||||||||| ||||||| || |||||| |||||| || ||||||||||| || Sbjct: 1082 gctaaaccctgctttcgtgaagagctcatgccagttattttcacttcgttgacggcctct 1023 Query: 241 cgtgaacacaagcatgagcatgtccatgagagtctgggcctcaaacatgacaggtcctaa 300 |||||||||||||||||| |||||||| ||||| || ||| ||||||||| | || || Sbjct: 1022 cgtgaacacaagcatgaggatgtccatcagagtttgttccttaaacatgacttggcccaa 963 Query: 301 tgatggttcgaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaat 360 ||| || ||||||| || || || ||||||||||| ||||||||||| || |||||||| Sbjct: 962 tgagggggcgaccacaatgtctattacaatcacctttcctccctcctcgcgtgaaggaat 903 Query: 361 ggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtggtgcagcac 420 ||||| |||||| |||||||||||||| | |||||| |||| |||| ||||||||| || Sbjct: 902 ggcatccttacattgggttaggatcttaaaacaatcctcgtaactcaagtggtgcaaaac 843 Query: 421 aagcttgagcatcac 435 ||||||||||||||| Sbjct: 842 aagcttgagcatcac 828
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 111 bits (56), Expect = 2e-21 Identities = 238/296 (80%), Gaps = 2/296 (0%) Strand = Plus / Minus Query: 131 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 190 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 64471 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 64412 Query: 191 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 250 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 64411 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 64352 Query: 251 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 309 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 64351 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 64293 Query: 310 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 369 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 64292 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 64233 Query: 370 acactgggttaggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| | |||||||||||| || || ||||| ||| |||| ||||| ||||||| Sbjct: 64232 gcactgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 64177 Score = 63.9 bits (32), Expect = 4e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 123014 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 122955 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 122954 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 122895 Query: 394 atcgtcgtcactccagtggtgcagcacaagct 425 ||| || || ||||||||||||| ||||||| Sbjct: 122894 atcatcatcgctccagtggtgcaatacaagct 122863 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 353 gaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtgg 412 ||||||||||| ||||| || || | ||||| |||||||| ||||| || ||||||||| Sbjct: 128503 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccagtgg 128562
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 2e-21 Identities = 238/296 (80%), Gaps = 2/296 (0%) Strand = Plus / Plus Query: 131 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 190 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 11549317 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11549376 Query: 191 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 250 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11549377 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11549436 Query: 251 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 309 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11549437 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11549495 Query: 310 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 369 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 11549496 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11549555 Query: 370 acactgggttaggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| | |||||||||||| || || ||||| ||| |||| ||||| ||||||| Sbjct: 11549556 gcactgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 11549611 Score = 83.8 bits (42), Expect = 4e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 320 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 379 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 11329787 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11329846 Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 || || ||||||||||| ||||||||||||||||| |||||||||| Sbjct: 11329847 agtattttcacacaatcctcgtcactccagtggtgaagcacaagct 11329892 Score = 73.8 bits (37), Expect = 4e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 329 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 388 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 11354087 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11354146 Query: 389 acacaatcgtcgtcactccagtggtgcagcacaagct 425 |||||||| |||||| |||||||||| |||||||||| Sbjct: 11354147 acacaatcctcgtcattccagtggtgaagcacaagct 11354183 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 323 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 382 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 7137724 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7137783 Query: 383 atcttcacacaatcgtcgtcactcca 408 |||||||| || ||||| || ||||| Sbjct: 7137784 atcttcacgcagtcgtcatcgctcca 7137809 Score = 63.9 bits (32), Expect = 4e-07 Identities = 122/152 (80%) Strand = Plus / Plus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 11490774 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11490833 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 11490834 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11490893 Query: 394 atcgtcgtcactccagtggtgcagcacaagct 425 ||| || || ||||||||||||| ||||||| Sbjct: 11490894 atcatcatcgctccagtggtgcaatacaagct 11490925 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 183 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 223 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11329653 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11329693 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 155 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 214 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 11294558 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11294617 Query: 215 tcatt 219 ||||| Sbjct: 11294618 tcatt 11294622 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 353 gaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtgg 412 ||||||||||| ||||| || || | ||||| |||||||| ||||| || ||||||||| Sbjct: 11485285 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccagtgg 11485226
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 2e-21 Identities = 238/296 (80%), Gaps = 2/296 (0%) Strand = Plus / Plus Query: 131 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 190 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 11628506 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11628565 Query: 191 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 250 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11628566 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11628625 Query: 251 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 309 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11628626 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11628684 Query: 310 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 369 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 11628685 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11628744 Query: 370 acactgggttaggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| | |||||||||||| || || ||||| ||| |||| ||||| ||||||| Sbjct: 11628745 gcactgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 11628800 Score = 83.8 bits (42), Expect = 4e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 320 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 379 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 11408976 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11409035 Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 || || ||||||||||| ||||||||||||||||| |||||||||| Sbjct: 11409036 agtattttcacacaatcctcgtcactccagtggtgaagcacaagct 11409081 Score = 73.8 bits (37), Expect = 4e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 329 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 388 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 11433276 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11433335 Query: 389 acacaatcgtcgtcactccagtggtgcagcacaagct 425 |||||||| |||||| |||||||||| |||||||||| Sbjct: 11433336 acacaatcctcgtcattccagtggtgaagcacaagct 11433372 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 323 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 382 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 7203695 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7203754 Query: 383 atcttcacacaatcgtcgtcactcca 408 |||||||| || ||||| || ||||| Sbjct: 7203755 atcttcacgcagtcgtcatcgctcca 7203780 Score = 63.9 bits (32), Expect = 4e-07 Identities = 122/152 (80%) Strand = Plus / Plus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 11569963 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11570022 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 11570023 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11570082 Query: 394 atcgtcgtcactccagtggtgcagcacaagct 425 ||| || || ||||||||||||| ||||||| Sbjct: 11570083 atcatcatcgctccagtggtgcaatacaagct 11570114 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 183 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 223 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11408842 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11408882 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 155 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 214 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 11373747 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11373806 Query: 215 tcatt 219 ||||| Sbjct: 11373807 tcatt 11373811 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 353 gaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtgg 412 ||||||||||| ||||| || || | ||||| |||||||| ||||| || ||||||||| Sbjct: 11564474 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccagtgg 11564415
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 320 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 379 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 978 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 919 Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagcttgagcat 432 || || ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 918 agtattttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcat 866 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 183 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 223 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 1112 tgaagcctgctttcttgaagagatcacgccagtcattttcg 1072
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 87.7 bits (44), Expect = 3e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 1007 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 948 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 947 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 888 Query: 394 atcgtcgtcactccagtggtgcagcacaagcttgagcatcacgg 437 ||| || || ||||||||||||| ||||||||||||||||||| Sbjct: 887 atcatcatcgctccagtggtgcaatacaagcttgagcatcacgg 844
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 87.7 bits (44), Expect = 3e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 1012 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 953 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 952 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 893 Query: 394 atcgtcgtcactccagtggtgcagcacaagcttgagcatcacgg 437 ||| || || ||||||||||||| ||||||||||||||||||| Sbjct: 892 atcatcatcgctccagtggtgcaatacaagcttgagcatcacgg 849
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 83.8 bits (42), Expect = 4e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 320 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 379 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 116145 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 116204 Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 || || ||||||||||| ||||||||||||||||| |||||||||| Sbjct: 116205 agtattttcacacaatcctcgtcactccagtggtgaagcacaagct 116250 Score = 73.8 bits (37), Expect = 4e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 329 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 388 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 140445 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 140504 Query: 389 acacaatcgtcgtcactccagtggtgcagcacaagct 425 |||||||| |||||| |||||||||| |||||||||| Sbjct: 140505 acacaatcctcgtcattccagtggtgaagcacaagct 140541 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 183 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 223 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 116011 tgaagcctgctttcttgaagagatcacgccagtcattttcg 116051 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 155 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 214 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 80916 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 80975 Query: 215 tcatt 219 ||||| Sbjct: 80976 tcatt 80980
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 323 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 382 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 44831 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 44772 Query: 383 atcttcacacaatcgtcgtcactcca 408 |||||||| || ||||| || ||||| Sbjct: 44771 atcttcacgcagtcgtcatcgctcca 44746
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 323 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 382 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 50944 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 51003 Query: 383 atcttcacacaatcgtcgtcactcca 408 |||||||| || ||||| || ||||| Sbjct: 51004 atcttcacgcagtcgtcatcgctcca 51029
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 63.9 bits (32), Expect = 4e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 274 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 333 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 8763 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 8704 Query: 334 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 393 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 8703 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 8644 Query: 394 atcgtcgtcactccagtggtgcagcacaagct 425 ||| || || ||||||||||||| ||||||| Sbjct: 8643 atcatcatcgctccagtggtgcaatacaagct 8612 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 353 gaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtgg 412 ||||||||||| ||||| || || | ||||| |||||||| ||||| || ||||||||| Sbjct: 14252 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccagtgg 14311
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 130 gtagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcgg 182 |||||||||||||||||| || || || |||||||||| || |||||||||| Sbjct: 1103 gtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcgg 1051 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagcttgagcat 432 |||||||| || || |||||||| |||||| |||||| || ||||||||||| Sbjct: 853 aggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcat 801
>gb|DQ428476.1| Sorghum propinquum locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428475.1| Sorghum bicolor voucher PI585454 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428474.1| Sorghum bicolor voucher PI267539 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428473.1| Sorghum bicolor voucher PI267408 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428472.1| Sorghum bicolor voucher PI221607 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428471.1| Sorghum bicolor voucher PI152702 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428470.1| Sorghum bicolor voucher NSL92371 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428469.1| Sorghum bicolor voucher NSL87902b locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428468.1| Sorghum bicolor voucher NSL87902a locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428467.1| Sorghum bicolor voucher NSL87666 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428466.1| Sorghum bicolor voucher NSL77217 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428465.1| Sorghum bicolor voucher NSL77034 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428464.1| Sorghum bicolor voucher NSL56174 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428463.1| Sorghum bicolor voucher NSL56003 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428462.1| Sorghum bicolor voucher NSL55243 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428461.1| Sorghum bicolor voucher NSL51365 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428460.1| Sorghum bicolor voucher NSL51030b locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428459.1| Sorghum bicolor voucher NSL51030a locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428458.1| Sorghum bicolor voucher NSL50875 locus PRC1113 genomic sequence Length = 666 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 aggatcttcacacaatcgtcgtcactccagtggtgcagcacaagct 425 ||||| ||||| || || || ||| ||||||||||||||||||||| Sbjct: 649 aggatgttcacgcagtcctcatcagtccagtggtgcagcacaagct 604
>ref|XM_670200.1| Plasmodium berghei strain ANKA hypothetical protein (PB104271.00.0) partial mRNA Length = 2088 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ccattttcttgataattttgt 176 ||||||||||||||||||||| Sbjct: 1345 ccattttcttgataattttgt 1325
>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 213440 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cattttcttgataattttgta 177 ||||||||||||||||||||| Sbjct: 76825 cattttcttgataattttgta 76805
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 acaggtcctaatgatggttc 309 |||||||||||||||||||| Sbjct: 859378 acaggtcctaatgatggttc 859359
>emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chromosome 13q12.3-14.11 Contains a ribosomal protein S12 (RPS12) pseudogene and a CpG island, complete sequence Length = 182178 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cattttcttgataattttgt 176 |||||||||||||||||||| Sbjct: 120367 cattttcttgataattttgt 120386
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tagacctcgatgacacctcg 150 |||||||||||||||||||| Sbjct: 505 tagacctcgatgacacctcg 486 Score = 40.1 bits (20), Expect = 5.9 Identities = 71/88 (80%) Strand = Plus / Minus Query: 350 cgggaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccag 409 |||||||| ||||| ||||| || || | |||||||| | ||||| ||||| |||||| Sbjct: 289 cgggaaggtatggccttcttgcattgagcgaggatcttgatgcaatcctcgtcgctccag 230 Query: 410 tggtgcagcacaagcttgagcatcacgg 437 ||| || |||||||||||||| |||| Sbjct: 229 aagtgtagaacaagcttgagcatgacgg 202
>emb|CR933001.12| Zebrafish DNA sequence from clone DKEY-158B11 in linkage group 5, complete sequence Length = 158802 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cattttcttgataattttgt 176 |||||||||||||||||||| Sbjct: 91007 cattttcttgataattttgt 90988
>gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187657 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ttagataaacttttgagaaa 119 |||||||||||||||||||| Sbjct: 100340 ttagataaacttttgagaaa 100321
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence Length = 156357 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ataaacaaagcacactgcaa 77 |||||||||||||||||||| Sbjct: 116672 ataaacaaagcacactgcaa 116691
>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24, complete sequence Length = 199820 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 acacaagcatgagcatgtccatga 269 |||||||||| ||||||||||||| Sbjct: 68031 acacaagcattagcatgtccatga 68008
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence Length = 174082 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ataaacaaagcacactgcaa 77 |||||||||||||||||||| Sbjct: 21693 ataaacaaagcacactgcaa 21674
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 353 gaaggaatggcattcttacactgggttaggatcttcacacaatcgtcgtcactccagtgg 412 ||||||||||| ||||| || || | ||||| |||||||| ||||| || ||||||||| Sbjct: 965 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccagtgg 906
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y Length = 1351786 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ataaacaaagcacactgcaa 77 |||||||||||||||||||| Sbjct: 1174694 ataaacaaagcacactgcaa 1174675 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ataaacaaagcacactgcaa 77 |||||||||||||||||||| Sbjct: 1113516 ataaacaaagcacactgcaa 1113535
>gb|AC149314.2| Phakopsora pachyrhizi clone JGIAFNA-101K12, complete sequence Length = 35483 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 acacaagcatgagcatgtccatgagagt 273 |||||| ||||||||||| ||||||||| Sbjct: 12685 acacaatcatgagcatgtgcatgagagt 12658
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 acacaagcatgagcatgtccatga 269 |||||||||| ||||||||||||| Sbjct: 207721 acacaagcattagcatgtccatga 207744
>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence Length = 214005 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tacataaacaaagcacactg 74 |||||||||||||||||||| Sbjct: 31022 tacataaacaaagcacactg 31003
>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283, complete sequence Length = 112721 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgagaaaggctttacttgta 132 |||||||||||||||||||| Sbjct: 91431 tgagaaaggctttacttgta 91412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,711,244 Number of Sequences: 3902068 Number of extensions: 4711244 Number of successful extensions: 106010 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105762 Number of HSP's gapped (non-prelim): 242 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)