>RHOX5_RAT (Q63630) Homeobox protein Rhox5 (Reproductive homeobox on|
           chromosome X 5) (Homeobox protein Pem) (Placenta and
           embryonic expression protein)
          Length = 211

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 301 RRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESAC 191
           RRP  T R      R +L SG+ SGGR L   W S C
Sbjct: 122 RRPGSTQRRLAELERILLSSGSSSGGRSLIDGWISVC 158

>YFCJ_SALTY (Q8ZNB8) UPF0226 protein yfcJ|
          Length = 392

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +1

Query: 277 YGTFPVAAVSSLIALGSIALCWLAPK------GALSSNLLCSLIRPA 399
           +G   VA VS L+    + L WLAP       GA  +   CSLI PA
Sbjct: 276 FGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPA 322

>VP13B_HUMAN (Q7Z7G8) Vacuolar protein sorting 13B (Cohen syndrome protein 1)|
          Length = 4022

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 350  GASQHNAIDPSAMSELTAATGNVPYDVFSSARHAAL 243
            GASQH    PS  S +      +P+D+F +A   +L
Sbjct: 1813 GASQHRIARPSRQSSIVKNLNFIPFDIFITASRISL 1848

>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)|
          Length = 5596

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 357  SFRREPAQCDRPQRNERAHGGHRERAVRRV 268
            SF+R+P Q D    NER+ G H ER  +R+
Sbjct: 5096 SFKRKPGQAD----NERSMGDHNERVHKRL 5121

>GLI4_HUMAN (P10075) Zinc finger protein GLI4 (Krueppel-related zinc finger|
           protein 4) (HKR4 protein)
          Length = 376

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -3

Query: 298 RPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYMGGFSLRWHACSSCM* 119
           +P G  R T  ++    P G P     LG ++  + + SA          + H C +C  
Sbjct: 138 QPRGAWRVTLVQQAAAGPEGAPERAAELGVNFGRSRQGSAR-------GAKPHRCEACGK 190

Query: 118 AWRYEE*CLIHPRLRKHE 65
           +++Y    L H R+   E
Sbjct: 191 SFKYNSLLLKHQRIHTGE 208

>JAG2_MOUSE (Q9QYE5) Jagged-2 precursor (Jagged2)|
          Length = 1247

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -3

Query: 328  STPAQ*ASSRRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYM 164
            STP Q  SS       R T    RD +P GT  G    G     A + +AH R +
Sbjct: 958  STPCQPRSSHLDNNCARLTLRFNRDQVPQGTTVGAICSGIRALPATRAAAHDRLL 1012

>YB2A_SCHPO (P87311) Hypothetical zinc finger MYND domain-containing protein|
           C31F10.10c
          Length = 574

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -2

Query: 404 NSAGRINEHNKFDDR--------APFGASQHNAIDPSAMSELTAATGNVPYDVFSSARHA 249
           NS   +++HN   D         +PFGAS  ++      S     +G+V     S+ RH+
Sbjct: 163 NSLDSVSQHNSSADSLFVNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQSTFRHS 222

Query: 248 ALRDAVGREET 216
             RD +G   T
Sbjct: 223 VNRDLLGSSST 233

>MNTH_MYCBO (O69443) Probable manganese transport protein mntH (BRAMP)|
          Length = 684

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -3

Query: 310 ASSRRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYM--GGFSLRWHA 137
           A   R P   R T        PSGTP+ GR   T    + + S   R++  G F L  H 
Sbjct: 212 AQMLRAPAASRPTAINA----PSGTPAAGRTSPTPTTDSQRRSRVARWLVAGEFRLLSHL 267

Query: 136 CS 131
           CS
Sbjct: 268 CS 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,645,911
Number of Sequences: 219361
Number of extensions: 1205527
Number of successful extensions: 3558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)