ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATU1_YEAST (P38360) Probable copper-transporting ATPase (EC 3.6.... 31 1.0
2YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8 28 6.7

>ATU1_YEAST (P38360) Probable copper-transporting ATPase (EC 3.6.3.4)|
           (Cu(2+)-ATPase)
          Length = 1216

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 166 RSACYRLLLDSMMIDYLSPSSSRDCTRLPVHTSRQCYLSPGSIC 35
           R  C+R  ++    D L   S RDCT  P  T ++C      IC
Sbjct: 34  RGECHRRSIEMHANDNLGLVSQRDCTNRPKITPQECLSETEQIC 77



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>YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8|
          Length = 397

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 151 RLLLDSMMIDYLSPSSSRDCTRL-PVHTSRQCYLS 50
           R L+ S +ID  SPSSS   +R+ P H    C++S
Sbjct: 264 RALISSPLIDTASPSSSSSSSRISPRHECFDCHVS 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,896,441
Number of Sequences: 219361
Number of extensions: 378115
Number of successful extensions: 894
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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