ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_208527.1| Eremothecium gossypii ABR225Cp (ABR225C), mRNA 46 0.038
2gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.038
3gb|AF483900.1| Phaseolus vulgaris clone D763 microsatellite sequ... 40 2.4
4gb|AC087783.10| Homo sapiens chromosome 11, clone RP11-350D17, c... 40 2.4
5gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, com... 38 9.3
6gb|AC109249.17| Mus musculus chromosome 13, clone RP23-78E1, com... 38 9.3
7emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplo... 38 9.3
8emb|Z82194.1|HS272J12 Human DNA sequence from clone RP1-272J12 o... 38 9.3
9gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complet... 38 9.3
10gb|AC158170.2| Mus musculus BAC clone RP23-261K17 from chromosom... 38 9.3
11gb|AC116360.3| Homo sapiens chromosome 5 clone RP11-69F12, compl... 38 9.3
12gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complet... 38 9.3
13gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A... 38 9.3
14emb|CT571265.12| Mouse DNA sequence from clone RP23-181D9 on chr... 38 9.3
15emb|AL132711.5|CNS01DTC Human chromosome 14 DNA sequence BAC R-5... 38 9.3
16emb|AL929233.9| Mouse DNA sequence from clone RP23-388H13 on chr... 38 9.3
17emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chrom... 38 9.3
18gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, co... 38 9.3 
>ref|NM_208527.1| Eremothecium gossypii ABR225Cp (ABR225C), mRNA
          Length = 2832

 Score = 46.1 bits (23), Expect = 0.038
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 157 aggcagatctgggggaagaggac 179
           |||||||||||||||||||||||
Sbjct: 158 aggcagatctgggggaagaggac 180
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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 46.1 bits (23), Expect = 0.038
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 157    aggcagatctgggggaagaggac 179
              |||||||||||||||||||||||
Sbjct: 826235 aggcagatctgggggaagaggac 826213
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>gb|AF483900.1| Phaseolus vulgaris clone D763 microsatellite sequence
          Length = 489

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 agataatcaatcatcatcga 136
           ||||||||||||||||||||
Sbjct: 152 agataatcaatcatcatcga 171
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>gb|AC087783.10| Homo sapiens chromosome 11, clone RP11-350D17, complete sequence
          Length = 204001

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 92     acaatctctactactagagggaga 115
              |||||||||||| |||||||||||
Sbjct: 122867 acaatctctacttctagagggaga 122890
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>gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, complete sequence
          Length = 210003

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   agagggagagagataatcaatca 129
             ||||||||||||| |||||||||
Sbjct: 16100 agagggagagagagaatcaatca 16122
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>gb|AC109249.17| Mus musculus chromosome 13, clone RP23-78E1, complete sequence
          Length = 203574

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 166    tgggggaagaggacacgaa 184
              |||||||||||||||||||
Sbjct: 172647 tgggggaagaggacacgaa 172629
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>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 164   tctgggggaagaggacacg 182
             |||||||||||||||||||
Sbjct: 31696 tctgggggaagaggacacg 31714



 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 164  tctgggggaagaggacacg 182
            |||||||||||||||||||
Sbjct: 9315 tctgggggaagaggacacg 9333
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>emb|Z82194.1|HS272J12 Human DNA sequence from clone RP1-272J12 on chromosome 22, complete
             sequence
          Length = 161076

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   gagggagagagataatcaa 126
             |||||||||||||||||||
Sbjct: 61568 gagggagagagataatcaa 61550
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>gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complete sequence
          Length = 165538

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   ctactagagggagagagat 120
             |||||||||||||||||||
Sbjct: 58839 ctactagagggagagagat 58857
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>gb|AC158170.2| Mus musculus BAC clone RP23-261K17 from chromosome 16, complete sequence
          Length = 176422

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     taaatggagctatcatacttatc 33
              ||||||||||||||||| |||||
Sbjct: 151104 taaatggagctatcataattatc 151082
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>gb|AC116360.3| Homo sapiens chromosome 5 clone RP11-69F12, complete sequence
          Length = 44031

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 158  ggcagatctgggggaagag 176
            |||||||||||||||||||
Sbjct: 5772 ggcagatctgggggaagag 5790
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>gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complete sequence
          Length = 149603

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 158    ggcagatctgggggaagag 176
              |||||||||||||||||||
Sbjct: 128960 ggcagatctgggggaagag 128978
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>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete
             sequence
          Length = 109180

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    aatggagctatcatactta 31
             |||||||||||||||||||
Sbjct: 56289 aatggagctatcatactta 56307
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>emb|CT571265.12| Mouse DNA sequence from clone RP23-181D9 on chromosome 14, complete
             sequence
          Length = 206513

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    ctactactagagggagaga 117
             |||||||||||||||||||
Sbjct: 53448 ctactactagagggagaga 53466
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>emb|AL132711.5|CNS01DTC Human chromosome 14 DNA sequence BAC R-566J3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185799

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 154    agcaggcagatctggggga 172
              |||||||||||||||||||
Sbjct: 138455 agcaggcagatctggggga 138473
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>emb|AL929233.9| Mouse DNA sequence from clone RP23-388H13 on chromosome 2, complete
             sequence
          Length = 133534

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   gagggagagagataatcaa 126
             |||||||||||||||||||
Sbjct: 78332 gagggagagagataatcaa 78314
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>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete
             sequence
          Length = 231247

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 166   tgggggaagaggacacgaa 184
             |||||||||||||||||||
Sbjct: 20955 tgggggaagaggacacgaa 20937
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>gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, complete sequence
          Length = 214994

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 107    agagggagagagataatcaatca 129
              ||||||||||||| |||||||||
Sbjct: 196460 agagggagagagagaatcaatca 196482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,542,668
Number of Sequences: 3902068
Number of extensions: 1542668
Number of successful extensions: 151194
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151129
Number of HSP's gapped (non-prelim): 65
length of query: 189
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 167
effective length of database: 17,147,199,772
effective search space: 2863582361924
effective search space used: 2863582361924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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