>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29)
          Length = 241

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHG 247
           PG    GAYPG+A       AP   Y   GAHG
Sbjct: 36  PGAAYPGAYPGHAPGAYPGQAPPGPYPGPGAHG 68

>CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)|
          Length = 526

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPG--ASYNAHGAHGRK 241
           PG  G+  YPG AG +   GAPG   S    G HG +
Sbjct: 102 PGHKGERGYPGNAGPVGAAGAPGPQGSVGPTGKHGNR 138

>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific|
           homeobox protein 1)
          Length = 418

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 348 CPGVYGKGAYPGYAGQLLVDG-APGASYNAHGAHGRKYLLPALFDPPP 208
           C    G    PG A Q    G APG S  + G  G  + + +L  PPP
Sbjct: 47  CVSARGARRGPGSAMQRAAGGGAPGGSGGSSGGPGAAFSIDSLIGPPP 94

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 342 GVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRKYLLP 229
           G  G G+YPGYA    +   P A   ++ AH  K+LLP
Sbjct: 346 GTEGLGSYPGYAP---LPHLPPAFIPSYNAHYPKFLLP 380



 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 293 TSSWPAYPGYAPLPYTPGHAVAASN 367
           T    +YPGYAPLP+ P   + + N
Sbjct: 347 TEGLGSYPGYAPLPHLPPAFIPSYN 371

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 256 AVGVVTRSGGPVHQQLAGVPG 318
           + G V R G P HQ LAGVPG
Sbjct: 319 SAGQVGRPGSPGHQGLAGVPG 339

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 342 GVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRKYLLP 229
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>LEG3_HUMAN (P17931) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29) (L-31)
           (Galactoside-binding protein) (GALBP)
          Length = 249

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -3

Query: 351 ACPGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRKYLLPALFDPPPS 205
           A PG    GAYPG A      GAPGA   A          P ++  PPS
Sbjct: 43  AYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPA--------PGVYPGPPS 83

>LON3_CAEEL (Q23628) Cuticle collagen lon-3 precursor|
          Length = 324

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 366 LEAATACPGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRK 241
           +  A   PG  G+   PG  G++   GAPG    A GA G K
Sbjct: 186 MRGARGQPGYPGRDGQPGMPGEMGPTGAPGDD-GAPGASGMK 226

>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPG 277
           PG  G+G YPG  G++   G PG
Sbjct: 736 PGTKGEGGYPGRPGEVGQPGFPG 758

>YK61_CAEEL (P34340) Putative cuticle collagen C29E4.1|
          Length = 305

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 363 EAATACPGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRKYLLPALFDPPPSA 202
           + A   PG  G+ AYPG  G+    GA G   N      R+         PP+A
Sbjct: 240 KGAPGTPGSNGRDAYPGQPGKAGEPGAVGKDANYCPCPARRDSKTESVHEPPAA 293

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 345  PGVYGKGAYPGYAGQLLVDGAPG--ASYNAHGAHGRK 241
            PG  G+  YPG AG +   GAPG        G HG +
Sbjct: 940  PGHKGERGYPGNAGPVGAAGAPGPQGPVGPVGKHGNR 976

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPGAS 271
           PGV G+  +PG  G    +G PGAS
Sbjct: 207 PGVAGENGHPGMPGMDGANGEPGAS 231

>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRK 241
           PG  G   YPG  G+  +DG PG     HG  G +
Sbjct: 754 PGPVGPDGYPGTPGERGMDGLPGFP-GLHGEPGMR 787



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 348 CPGVYGKGAYPGYAGQLLVDGAPG 277
           CPG  G+   PG+ G+    GAPG
Sbjct: 41  CPGTKGERGNPGFGGEPGHPGAPG 64

>PNS1_NEUCR (Q870V7) Protein PNS1|
          Length = 554

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 342 GVYGKGAYPGYAGQLLVDGAPGASY-NAHGAHGRKYLLPALFDPPPSACSTVV*D*YGGP 166
           G YG+    GY G     G P   Y N +G  G  Y  P    PPP+       D YGGP
Sbjct: 37  GNYGQQPQYGYGG-----GPPPQQYGNGYGDGG--YAPPQ--GPPPNGSKPPPTDGYGGP 87

Query: 165 VVATSEV 145
             +  EV
Sbjct: 88  PPSYDEV 94

>KSGA_ANAMM (Q5PAV9) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 270

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 243 KYLLPALFDPPPSACSTVV 187
           K L P  F PPP  CS+VV
Sbjct: 169 KDLQPGAFSPPPKVCSSVV 187

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPGAS 271
           PG +GK   PG AG L   G PG +
Sbjct: 316 PGAHGKDGAPGTAGPLGPPGPPGTA 340

>DRTS_PLAVI (O02604) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 623

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 185 YTTVEQAEGGGSNSAGSRYFXXXXXXXXXXXXXXXSTSSWPAYP-GYAPLP 334
           Y  +E ++GGG N++G                     SSW + P  Y PLP
Sbjct: 79  YLRMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLP 129

>C1QT5_HUMAN (Q9BXJ0) Complement C1q tumor necrosis factor-related protein 5|
           precursor
          Length = 243

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPGASYNAHGAHGRKYLLPALFDPPP 208
           PG +G    PG  G+   DGAPGA     G  GR  L     DP P
Sbjct: 38  PGHHGSQGLPGRDGRDGRDGAPGAP-GEKGEGGRPGLPGPRGDPGP 82

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 345  PGVYGKGAYPGYAGQLLVDGAPG--ASYNAHGAHGRK 241
            PG  G+  YPG  G     GAPG   S    G HG +
Sbjct: 948  PGHKGERGYPGNIGPTGAAGAPGPHGSVGPAGKHGNR 984

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 345  PGVYGKGAYPGYAGQLLVDGAPG--ASYNAHGAHGRK 241
            PG  G+  YPG  G     GAPG   S    G HG +
Sbjct: 948  PGHKGERGYPGSIGPTGAAGAPGPHGSVGPAGKHGNR 984

>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 345 PGVYGKGAYPGYAGQLLVDGAPG 277
           PG YG   +PG  G+L + G PG
Sbjct: 313 PGSYGSPGFPGLKGELGLVGDPG 335

>GRP1_HORVU (P17816) Glycine-rich cell wall structural protein precursor|
          Length = 200

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 342 GVYGKGAYPGYAGQLLVDGAPGASYNAHGAHG 247
           G  G G YPG+ G+       G  Y+ HG  G
Sbjct: 99  GYGGGGGYPGHGGEGGGGYGGGGGYHGHGGEG 130

>SYK_RICPR (Q9ZDF8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 528

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 23  YLAREDPNTSSYTNYLHVYALQYY 94
           Y  +  PNTS+Y ++L  +A++YY
Sbjct: 403 YEPKATPNTSTYLDHLTEFAIRYY 426

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 345  PGVYGKGAYPGYAGQLLVDGAPG 277
            PG+ G+   PGYAG   + G PG
Sbjct: 1293 PGLKGEPGKPGYAGAAGIKGEPG 1315

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 363 EAATACPGVYGKGAYPGY---AGQLLVDGAPGASYNA--HGAHGRKYLLPALFDPPPS 205
           + AT  PG+ G   +PG    +G     GAPG   N+   GA G K    A  +P P+
Sbjct: 386 KGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPA 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,855,558
Number of Sequences: 219361
Number of extensions: 777278
Number of successful extensions: 3152
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)