ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 139 bits (70), Expect = 7e-30 Identities = 124/142 (87%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| || ||||| |||| |||||||||||||| |||||||| || || |||| | Sbjct: 6191302 agcgccgggaggaggtatttccggccgtgcgcgccgtgcgcgttgtagctggcgccggtg 6191361 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||| Sbjct: 6191362 gccttgtccaccagcagcgcgccggcgtagcccgggtacgcgcccttgccgtacacgccc 6191421 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||||||||||||||||| Sbjct: 6191422 gtgcacgccgtcgcggcctcca 6191443 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgccggcagcaggtacttcc 245 |||||||||||||||||||| Sbjct: 6189005 cgccggcagcaggtacttcc 6189024
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 139 bits (70), Expect = 7e-30 Identities = 124/142 (87%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| || ||||| |||| |||||||||||||| |||||||| || || |||| | Sbjct: 105121 agcgccgggaggaggtatttccggccgtgcgcgccgtgcgcgttgtagctggcgccggtg 105180 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||| Sbjct: 105181 gccttgtccaccagcagcgcgccggcgtagcccgggtacgcgcccttgccgtacacgccc 105240 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||||||||||||||||| Sbjct: 105241 gtgcacgccgtcgcggcctcca 105262 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgccggcagcaggtacttcc 245 |||||||||||||||||||| Sbjct: 102824 cgccggcagcaggtacttcc 102843
>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence Length = 962 Score = 139 bits (70), Expect = 7e-30 Identities = 124/142 (87%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| || ||||| |||| |||||||||||||| |||||||| || || |||| | Sbjct: 812 agcgccgggaggaggtatttccggccgtgcgcgccgtgcgcgttgtagctggcgccggtg 753 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||| Sbjct: 752 gccttgtccaccagcagcgcgccggcgtagcccgggtacgcgcccttgccgtacacgccc 693 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||||||||||||||||| Sbjct: 692 gtgcacgccgtcgcggcctcca 671
>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full insert sequence Length = 837 Score = 131 bits (66), Expect = 2e-27 Identities = 123/142 (86%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| || ||||| |||| |||||||||||||| |||||||| || || |||| | Sbjct: 79 agcgccgggaggaggtatttccggccgtgcgcgccgtgcgcgttgtagctggcgccggtg 138 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| |||||| || || ||||||||||||||||||||||| ||| Sbjct: 139 gccttgtccaccagcagcgcgccggcctagcccgggtacgcgcccttgccgtacacgccc 198 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||||||||||||||||| Sbjct: 199 gtgcacgccgtcgcggcctcca 220
>gb|AY105815.1| Zea mays PCO102946 mRNA sequence Length = 1238 Score = 99.6 bits (50), Expect = 6e-18 Identities = 119/142 (83%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | |||||||||||||||||| || |||| ||| ||| | || || ||| | Sbjct: 996 agcgccgggaccaggtacttcctcccgtgggccccgttggcattgaagctggccccgctg 937 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||| ||||||||| ||| ||||| |||||||||||||||||||||||||| || Sbjct: 936 gcctggtctaccagcagcgagccagcgtagccggggtacgcgcccttgccgtacacgccg 877 Query: 344 gggcacgccgtcgcggcctcca 365 | ||||||||| |||||||||| Sbjct: 876 gcgcacgccgtggcggcctcca 855
>gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced protein 1-like protein mRNA, complete cds Length = 1160 Score = 91.7 bits (46), Expect = 1e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | ||||||||||||||| || || |||| ||| ||| | || || ||| | Sbjct: 989 agcgccgggaccaggtacttcctcccatgggccccgttggcattgaagctggccccgctg 930 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| || ||||| |||||||||||||||||||||||||| || Sbjct: 929 gcctggtccaccagcagcgaccccgcgtagccggggtacgcgcccttgccgtacacgccg 870 Query: 344 gggcacgccgtcgcggcctcca 365 | ||||||||| |||||||||| Sbjct: 869 gcgcacgccgtggcggcctcca 848
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 992 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 933 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 932 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 873 Query: 346 gcacgccg 353 |||||||| Sbjct: 872 gcacgccg 865
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 990 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 931 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 930 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 871 Query: 346 gcacgccg 353 |||||||| Sbjct: 870 gcacgccg 863
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 31842764 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 31842823 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 31842824 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 31842883 Query: 346 gcacgccg 353 |||||||| Sbjct: 31842884 gcacgccg 31842891 Score = 77.8 bits (39), Expect = 2e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 227 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggcc 286 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| | || Sbjct: 31859244 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 31859303 Query: 287 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 346 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 31859304 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 31859363 Query: 347 cacgccgtcgcggcctcca 365 ||||||||||||||||||| Sbjct: 31859364 cacgccgtcgcggcctcca 31859382 Score = 75.8 bits (38), Expect = 9e-11 Identities = 116/142 (81%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | |||||| |||||||||||||| || | |||||||| || || ||| | Sbjct: 31870913 agcgccgggaccaggtatttcctcccgtgcgccccattcgcgttgtagctggccccgctg 31870854 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| || ||||| || |||||||| |||||||||||||| || Sbjct: 31870853 gccgggtccaccagcagcgacccagcgtaacccgggtacgcccccttgccgtacactccg 31870794 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||| || |||||||||| Sbjct: 31870793 gcgcacgcggtggcggcctcca 31870772 Score = 52.0 bits (26), Expect = 0.001 Identities = 113/142 (79%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 ||||| || |||||||| |||||||||| |||||| | |||||| || || || |||| Sbjct: 31853826 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 31853885 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 31853886 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 31853945 Query: 344 gggcacgccgtcgcggcctcca 365 ||||||||||| |||||||||| Sbjct: 31853946 gggcacgccgtggcggcctcca 31853967
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 3765 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 3824 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 3825 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 3884 Query: 346 gcacgccg 353 |||||||| Sbjct: 3885 gcacgccg 3892 Score = 77.8 bits (39), Expect = 2e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 227 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggcc 286 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| | || Sbjct: 20245 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 20304 Query: 287 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 346 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 20305 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 20364 Query: 347 cacgccgtcgcggcctcca 365 ||||||||||||||||||| Sbjct: 20365 cacgccgtcgcggcctcca 20383 Score = 75.8 bits (38), Expect = 9e-11 Identities = 116/142 (81%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | |||||| |||||||||||||| || | |||||||| || || ||| | Sbjct: 31914 agcgccgggaccaggtatttcctcccgtgcgccccattcgcgttgtagctggccccgctg 31855 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| || ||||| || |||||||| |||||||||||||| || Sbjct: 31854 gccgggtccaccagcagcgacccagcgtaacccgggtacgcccccttgccgtacactccg 31795 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||| || |||||||||| Sbjct: 31794 gcgcacgcggtggcggcctcca 31773 Score = 52.0 bits (26), Expect = 0.001 Identities = 113/142 (79%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 ||||| || |||||||| |||||||||| |||||| | |||||| || || || |||| Sbjct: 14827 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 14886 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 14887 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 14946 Query: 344 gggcacgccgtcgcggcctcca 365 ||||||||||| |||||||||| Sbjct: 14947 gggcacgccgtggcggcctcca 14968
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 138562 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 138621 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 138622 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 138681 Query: 346 gcacgccg 353 |||||||| Sbjct: 138682 gcacgccg 138689 Score = 77.8 bits (39), Expect = 2e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 227 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggcc 286 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| | || Sbjct: 155042 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 155101 Query: 287 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 346 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 155102 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 155161 Query: 347 cacgccgtcgcggcctcca 365 ||||||||||||||||||| Sbjct: 155162 cacgccgtcgcggcctcca 155180 Score = 52.0 bits (26), Expect = 0.001 Identities = 113/142 (79%) Strand = Plus / Plus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 ||||| || |||||||| |||||||||| |||||| | |||||| || || || |||| Sbjct: 149624 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 149683 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 149684 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 149743 Query: 344 gggcacgccgtcgcggcctcca 365 ||||||||||| |||||||||| Sbjct: 149744 gggcacgccgtggcggcctcca 149765
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 79.8 bits (40), Expect = 6e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggc 285 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| || Sbjct: 990 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 931 Query: 286 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 345 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 930 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 871 Query: 346 gcacgccg 353 |||||||| Sbjct: 870 gcacgccg 863
>ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 77.8 bits (39), Expect = 2e-11 Identities = 114/139 (82%) Strand = Plus / Minus Query: 227 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggcc 286 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| | || Sbjct: 1018 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 959 Query: 287 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 346 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 958 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 899 Query: 347 cacgccgtcgcggcctcca 365 ||||||||||||||||||| Sbjct: 898 cacgccgtcgcggcctcca 880
>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence Length = 1222 Score = 77.8 bits (39), Expect = 2e-11 Identities = 114/139 (82%) Strand = Plus / Minus Query: 227 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggcc 286 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| | || Sbjct: 1018 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 959 Query: 287 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 346 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 958 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 899 Query: 347 cacgccgtcgcggcctcca 365 ||||||||||||||||||| Sbjct: 898 cacgccgtcgcggcctcca 880
>ref|XM_467879.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 75.8 bits (38), Expect = 9e-11 Identities = 116/142 (81%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | |||||| |||||||||||||| || | |||||||| || || ||| | Sbjct: 896 agcgccgggaccaggtatttcctcccgtgcgccccattcgcgttgtagctggccccgctg 837 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| || ||||| || |||||||| |||||||||||||| || Sbjct: 836 gccgggtccaccagcagcgacccagcgtaacccgggtacgcccccttgccgtacactccg 777 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||| || |||||||||| Sbjct: 776 gcgcacgcggtggcggcctcca 755
>dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full insert sequence Length = 1187 Score = 75.8 bits (38), Expect = 9e-11 Identities = 116/142 (81%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 |||||||| | |||||| |||||||||||||| || | |||||||| || || ||| | Sbjct: 961 agcgccgggaccaggtatttcctcccgtgcgccccattcgcgttgtagctggccccgctg 902 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| ||||||||||||| || ||||| || |||||||| |||||||||||||| || Sbjct: 901 gccgggtccaccagcagcgacccagcgtaacccgggtacgcccccttgccgtacactccg 842 Query: 344 gggcacgccgtcgcggcctcca 365 | |||||| || |||||||||| Sbjct: 841 gcgcacgcggtggcggcctcca 820
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 63.9 bits (32), Expect = 3e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 238 gtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggccccgtccaccag 297 ||||||||||| || |||||||| ||||||||| || ||||||| || |||| || || Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggtggcgtcgacgag 920 Query: 298 cagctggccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccg 353 || | ||||||| ||| ||||||||||| ||||||| || ||||||||||||| Sbjct: 919 gagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgggcacgccg 864
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 63.9 bits (32), Expect = 3e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 238 gtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggggccccgtccaccag 297 ||||||||||| || |||||||| ||||||||| || ||||||| || |||| || || Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggtggcgtcgacgag 920 Query: 298 cagctggccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccg 353 || | ||||||| ||| ||||||||||| ||||||| || ||||||||||||| Sbjct: 919 gagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgggcacgccg 864
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 226 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgg 281 |||||| |||||||||||||||| || |||||||| ||||||||| || ||||||| Sbjct: 991 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccgg 936
>ref|XM_483034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 56.0 bits (28), Expect = 8e-05 Identities = 85/104 (81%) Strand = Plus / Minus Query: 262 ggcgttgtaactcgctccgggggccccgtccaccagcagctggccggcgtacccggggta 321 ||||||||| || || |||| ||| |||||||| |||||||||||| |||||| ||||| Sbjct: 637 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 578 Query: 322 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctcca 365 ||||| |||| ||| ||||| ||| |||||| | ||||||| Sbjct: 577 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctcca 534
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 8e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 262 ggcgttgtaactcgctccgggggccccgtccaccagcagctggccggcgtacccggggta 321 ||||||||| || || |||| ||| |||||||| |||||||||||| |||||| ||||| Sbjct: 23962452 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 23962511 Query: 322 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctcca 365 ||||| |||| ||| ||||| ||| |||||| | ||||||| Sbjct: 23962512 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctcca 23962555
>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0419H09 Length = 143533 Score = 56.0 bits (28), Expect = 8e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 262 ggcgttgtaactcgctccgggggccccgtccaccagcagctggccggcgtacccggggta 321 ||||||||| || || |||| ||| |||||||| |||||||||||| |||||| ||||| Sbjct: 95603 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 95662 Query: 322 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctcca 365 ||||| |||| ||| ||||| ||| |||||| | ||||||| Sbjct: 95663 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctcca 95706
>dbj|AK073011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145I01, full insert sequence Length = 922 Score = 56.0 bits (28), Expect = 8e-05 Identities = 85/104 (81%) Strand = Plus / Minus Query: 262 ggcgttgtaactcgctccgggggccccgtccaccagcagctggccggcgtacccggggta 321 ||||||||| || || |||| ||| |||||||| |||||||||||| |||||| ||||| Sbjct: 635 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 576 Query: 322 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctcca 365 ||||| |||| ||| ||||| ||| |||||| | ||||||| Sbjct: 575 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctcca 532
>ref|XM_467876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1193 Score = 52.0 bits (26), Expect = 0.001 Identities = 113/142 (79%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 ||||| || |||||||| |||||||||| |||||| | |||||| || || || |||| Sbjct: 1021 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 962 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 961 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 902 Query: 344 gggcacgccgtcgcggcctcca 365 ||||||||||| |||||||||| Sbjct: 901 gggcacgccgtggcggcctcca 880
>dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F03, full insert sequence Length = 1193 Score = 52.0 bits (26), Expect = 0.001 Identities = 113/142 (79%) Strand = Plus / Minus Query: 224 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccgggg 283 ||||| || |||||||| |||||||||| |||||| | |||||| || || || |||| Sbjct: 1021 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 962 Query: 284 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 343 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 961 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 902 Query: 344 gggcacgccgtcgcggcctcca 365 ||||||||||| |||||||||| Sbjct: 901 gggcacgccgtggcggcctcca 880
>ref|NM_196156.1| Oryza sativa (japonica cultivar-group) putative phosphate-induced protein (OSJNBa0095C06.7), mRNA Length = 1005 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 317 gggtacgcgcccttgccgtacacccccgggcacgc 351 ||||||||||| ||||||||||||||||||||| Sbjct: 872 gggtacgcgccgcggccgtacacccccgggcacgc 838
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 317 gggtacgcgcccttgccgtacacccccgggcacgc 351 ||||||||||| ||||||||||||||||||||| Sbjct: 58756 gggtacgcgccgcggccgtacacccccgggcacgc 58722
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 317 gggtacgcgcccttgccgtacacccccgggcacgc 351 ||||||||||| ||||||||||||||||||||| Sbjct: 11474763 gggtacgcgccgcggccgtacacccccgggcacgc 11474729
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 317 gggtacgcgcccttgccgtacacccccgggcacgc 351 ||||||||||| ||||||||||||||||||||| Sbjct: 11481203 gggtacgcgccgcggccgtacacccccgggcacgc 11481169
>gb|AC016724.11| Homo sapiens BAC clone RP11-339F22 from 2, complete sequence Length = 197308 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 ggtgatttacattttttattt 27 ||||||||||||||||||||| Sbjct: 15805 ggtgatttacattttttattt 15785
>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10 Length = 495475 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 ggtgatttacattttttattt 27 ||||||||||||||||||||| Sbjct: 258257 ggtgatttacattttttattt 258237
>ref|XM_542202.2| PREDICTED: Canis familiaris similar to adenomatosis polyposis coli 2 (LOC485084), mRNA Length = 7620 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccccgtccaccagcagctgg 304 |||||||||||||||||||| Sbjct: 460 ccccgtccaccagcagctgg 441
>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence Length = 113199 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tgatttacattttttattta 28 |||||||||||||||||||| Sbjct: 45849 tgatttacattttttattta 45868
>ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin isoform 1 (LOC571005), partial mRNA Length = 1395 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 acagcgccggcagcaggtac 241 |||||||||||||||||||| Sbjct: 814 acagcgccggcagcaggtac 795
>gb|AC151345.2| Xenopus tropicalis clone ISB-383E8, complete sequence Length = 85312 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ggtgatttacattttttatttagc 30 |||||||| ||||||||||||||| Sbjct: 59312 ggtgattttcattttttatttagc 59335
>gb|AC149893.2| Xenopus tropicalis clone ISB-263C13, complete sequence Length = 80397 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ggtgatttacattttttatttagc 30 |||||||| ||||||||||||||| Sbjct: 77802 ggtgattttcattttttatttagc 77779
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tactactagttgtacccaat 108 |||||||||||||||||||| Sbjct: 150700 tactactagttgtacccaat 150681
>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11, complete sequence Length = 234851 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gatttacattttttatttag 29 |||||||||||||||||||| Sbjct: 21220 gatttacattttttatttag 21201
>gb|BT024052.1| Zea mays clone EL01N0437G11 mRNA sequence Length = 1768 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 gccggcgtacccggggtacgcgcc 327 |||||||||| ||||||||||||| Sbjct: 1229 gccggcgtacgcggggtacgcgcc 1252
>dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C08, full insert sequence Length = 1268 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgccggcagcaggtacttcc 245 |||||||||||||||||||| Sbjct: 976 cgccggcagcaggtacttcc 957
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 caccaccgtggagcaggcgg 206 |||||||||||||||||||| Sbjct: 1188650 caccaccgtggagcaggcgg 1188669 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,781,633 Number of Sequences: 3902068 Number of extensions: 2781633 Number of successful extensions: 55618 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55331 Number of HSP's gapped (non-prelim): 283 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
