Clone Name | rbart44c07 |
---|---|
Clone Library Name | barley_pub |
>gb|AF453838.1| Zea mays satase isoform II mRNA, complete cds Length = 1172 Score = 61.9 bits (31), Expect = 7e-07 Identities = 67/79 (84%) Strand = Plus / Minus Query: 119 atcacgtaatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagc 178 |||||||| ||||||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 943 atcacgtatgccgaccacccttgctccatggtgaccccaggctgctcttccggccgccgc 884 Query: 179 gacggcgccgccttcttcc 197 ||||||||||||||||| Sbjct: 883 tgcggcgccgccttcttcc 865
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 7e-04 Identities = 59/70 (84%) Strand = Plus / Plus Query: 126 aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185 |||||||||| |||||||||||||| ||||| || ||||||| ||||| | ||||| Sbjct: 5032454 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 5032513 Query: 186 ccgccttctt 195 |||||||||| Sbjct: 5032514 ccgccttctt 5032523 Score = 46.1 bits (23), Expect = 0.040 Identities = 29/31 (93%) Strand = Plus / Minus Query: 126 aatccgaccacctctgctccatggtcacccc 156 |||||||||| |||||||||||||| ||||| Sbjct: 4446765 aatccgaccatctctgctccatggttacccc 4446735
>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0064E16, from chromosome 3, complete sequence Length = 139123 Score = 52.0 bits (26), Expect = 7e-04 Identities = 59/70 (84%) Strand = Plus / Plus Query: 126 aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185 |||||||||| |||||||||||||| ||||| || ||||||| ||||| | ||||| Sbjct: 96908 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 96967 Query: 186 ccgccttctt 195 |||||||||| Sbjct: 96968 ccgccttctt 96977
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 52.0 bits (26), Expect = 7e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 126 aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185 |||||||||| |||||||||||||| ||||| || ||||||| ||||| | ||||| Sbjct: 137253 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 137194 Query: 186 ccgccttctt 195 |||||||||| Sbjct: 137193 ccgccttctt 137184
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 7e-04 Identities = 59/70 (84%) Strand = Plus / Plus Query: 126 aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185 |||||||||| |||||||||||||| ||||| || ||||||| ||||| | ||||| Sbjct: 5031669 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 5031728 Query: 186 ccgccttctt 195 |||||||||| Sbjct: 5031729 ccgccttctt 5031738 Score = 46.1 bits (23), Expect = 0.040 Identities = 29/31 (93%) Strand = Plus / Minus Query: 126 aatccgaccacctctgctccatggtcacccc 156 |||||||||| |||||||||||||| ||||| Sbjct: 4446880 aatccgaccatctctgctccatggttacccc 4446850
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 46.1 bits (23), Expect = 0.040 Identities = 29/31 (93%) Strand = Plus / Minus Query: 126 aatccgaccacctctgctccatggtcacccc 156 |||||||||| |||||||||||||| ||||| Sbjct: 52057 aatccgaccatctctgctccatggttacccc 52027
>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete sequence Length = 233270 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ccacctctgctccatggtcac 153 ||||||||||||||||||||| Sbjct: 156446 ccacctctgctccatggtcac 156466
>gb|AC150917.2| Bos taurus BAC CH240-430L1 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 186516 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 atttggagggaaaatctcttgct 90 ||||||||||||||||| ||||| Sbjct: 144058 atttggagggaaaatcttttgct 144036
>gb|AC150548.2| Bos taurus BAC CH240-72J19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 176133 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 atttggagggaaaatctcttgct 90 ||||||||||||||||| ||||| Sbjct: 101978 atttggagggaaaatcttttgct 101956
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 139 ctgctccatggtcacccctggtt 161 |||||||| |||||||||||||| Sbjct: 2943126 ctgctccaaggtcacccctggtt 2943148
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gcttgcactaaacacggca 106 ||||||||||||||||||| Sbjct: 3546484 gcttgcactaaacacggca 3546502
>ref|XM_746381.1| Aspergillus fumigatus Af293 thiol methyltransferase 1 (Afu4g13570) partial mRNA Length = 849 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ctgagctctgggataagag 40 ||||||||||||||||||| Sbjct: 80 ctgagctctgggataagag 98
>emb|Z83839.1|HS127L4 Human DNA sequence from clone RP1-127L4 on chromosome 22 Contains the 3' end of the SLC5A1 gene for solute carrier family 5 (sodiumglucose transporter) member 1, an adaptin, beta 1-like 1 pseudogene (ADTB1L1), an adaptin, beta 1-like 2 pseudogene (ADTB1L2) and the 3' end of a novel gene, complete sequence Length = 47812 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 actgagctctgggataaga 39 ||||||||||||||||||| Sbjct: 31772 actgagctctgggataaga 31790
>emb|BX323048.4| Human DNA sequence from clone RP11-539G11 on chromosome 1 Contains the 3' end of a novel gene (FLJ36760), complete sequence Length = 114676 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 acctctgctccatggtcac 153 ||||||||||||||||||| Sbjct: 13784 acctctgctccatggtcac 13802
>gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, complete sequence Length = 128000 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 acctctgctccatggtcac 153 ||||||||||||||||||| Sbjct: 96067 acctctgctccatggtcac 96085
>gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, complete sequence Length = 163579 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 acctctgctccatggtcac 153 ||||||||||||||||||| Sbjct: 148991 acctctgctccatggtcac 149009
>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown, complete sequence Length = 183880 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 actgagctctgggataaga 39 ||||||||||||||||||| Sbjct: 59282 actgagctctgggataaga 59300
>gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059q13 In Meningioma Deletion Region, complete sequence Length = 173029 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 actgagctctgggataaga 39 ||||||||||||||||||| Sbjct: 130584 actgagctctgggataaga 130566
>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR26A07, complete sequence Length = 172436 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 tcaaccacccacagataca 62 ||||||||||||||||||| Sbjct: 101551 tcaaccacccacagataca 101533
>gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR15P13, complete sequence Length = 187049 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 tcaaccacccacagataca 62 ||||||||||||||||||| Sbjct: 186888 tcaaccacccacagataca 186870
>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence Length = 157544 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 cacagatacagtatcattt 71 ||||||||||||||||||| Sbjct: 27225 cacagatacagtatcattt 27243
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gcttgcactaaacacggca 106 ||||||||||||||||||| Sbjct: 524292 gcttgcactaaacacggca 524310
>emb|CR678465.9| Zebrafish DNA sequence from clone DKEY-234P10 in linkage group 19, complete sequence Length = 82040 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 aactgagctctgggataagagta 42 |||||||||||| |||||||||| Sbjct: 12743 aactgagctctgtgataagagta 12721
>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete sequence Length = 304674 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 tcaaccacccacagataca 62 ||||||||||||||||||| Sbjct: 12690 tcaaccacccacagataca 12672
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 accacccacagatacagta 65 ||||||||||||||||||| Sbjct: 2845737 accacccacagatacagta 2845719 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,445,828 Number of Sequences: 3902068 Number of extensions: 1445828 Number of successful extensions: 102762 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102472 Number of HSP's gapped (non-prelim): 286 length of query: 197 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 175 effective length of database: 17,147,199,772 effective search space: 3000759960100 effective search space used: 3000759960100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)