ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF453838.1| Zea mays satase isoform II mRNA, complete cds 62 7e-07
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 7e-04
3gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare str... 52 7e-04
4gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare str... 52 7e-04
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
6gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.040
7emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chro... 42 0.63
8gb|AC150917.2| Bos taurus BAC CH240-430L1 (Children's Hospital ... 38 9.8
9gb|AC150548.2| Bos taurus BAC CH240-72J19 (Children's Hospital ... 38 9.8
10gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 38 9.8
11gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 9.8
12ref|XM_746381.1| Aspergillus fumigatus Af293 thiol methyltransfe... 38 9.8
13emb|Z83839.1|HS127L4 Human DNA sequence from clone RP1-127L4 on ... 38 9.8
14emb|BX323048.4| Human DNA sequence from clone RP11-539G11 on chr... 38 9.8
15gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, comp... 38 9.8
16gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, compl... 38 9.8
17gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chrom... 38 9.8
18gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059... 38 9.8
19gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, r... 38 9.8
20gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, r... 38 9.8
21gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, comple... 38 9.8
22dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 38 9.8
23emb|CR678465.9| Zebrafish DNA sequence from clone DKEY-234P10 in... 38 9.8
24gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12... 38 9.8
25emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 38 9.8

>gb|AF453838.1| Zea mays satase isoform II mRNA, complete cds
          Length = 1172

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 119 atcacgtaatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagc 178
           ||||||||  |||||||||  ||||||||||| ||||| || |||||||| |||||  ||
Sbjct: 943 atcacgtatgccgaccacccttgctccatggtgaccccaggctgctcttccggccgccgc 884

                              
Query: 179 gacggcgccgccttcttcc 197
             |||||||||||||||||
Sbjct: 883 tgcggcgccgccttcttcc 865



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 126     aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185
               |||||||||| |||||||||||||| ||||| ||  ||||||| |||||  |   |||||
Sbjct: 5032454 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 5032513

                         
Query: 186     ccgccttctt 195
               ||||||||||
Sbjct: 5032514 ccgccttctt 5032523



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 126     aatccgaccacctctgctccatggtcacccc 156
               |||||||||| |||||||||||||| |||||
Sbjct: 4446765 aatccgaccatctctgctccatggttacccc 4446735



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>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0064E16, from chromosome 3, complete sequence
          Length = 139123

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 126   aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185
             |||||||||| |||||||||||||| ||||| ||  ||||||| |||||  |   |||||
Sbjct: 96908 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 96967

                       
Query: 186   ccgccttctt 195
             ||||||||||
Sbjct: 96968 ccgccttctt 96977



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>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0058P18, from chromosome 3, complete sequence
          Length = 155037

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 126    aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185
              |||||||||| |||||||||||||| ||||| ||  ||||||| |||||  |   |||||
Sbjct: 137253 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 137194

                        
Query: 186    ccgccttctt 195
              ||||||||||
Sbjct: 137193 ccgccttctt 137184



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 126     aatccgaccacctctgctccatggtcacccctggttgctcttctggccgaagcgacggcg 185
               |||||||||| |||||||||||||| ||||| ||  ||||||| |||||  |   |||||
Sbjct: 5031669 aatccgaccatctctgctccatggttaccccgggaagctcttccggccgccgttgcggcg 5031728

                         
Query: 186     ccgccttctt 195
               ||||||||||
Sbjct: 5031729 ccgccttctt 5031738



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 126     aatccgaccacctctgctccatggtcacccc 156
               |||||||||| |||||||||||||| |||||
Sbjct: 4446880 aatccgaccatctctgctccatggttacccc 4446850



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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 126   aatccgaccacctctgctccatggtcacccc 156
             |||||||||| |||||||||||||| |||||
Sbjct: 52057 aatccgaccatctctgctccatggttacccc 52027



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>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete
              sequence
          Length = 233270

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 133    ccacctctgctccatggtcac 153
              |||||||||||||||||||||
Sbjct: 156446 ccacctctgctccatggtcac 156466



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>gb|AC150917.2| Bos taurus  BAC CH240-430L1 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 186516

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 68     atttggagggaaaatctcttgct 90
              ||||||||||||||||| |||||
Sbjct: 144058 atttggagggaaaatcttttgct 144036



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>gb|AC150548.2| Bos taurus  BAC CH240-72J19 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 176133

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 68     atttggagggaaaatctcttgct 90
              ||||||||||||||||| |||||
Sbjct: 101978 atttggagggaaaatcttttgct 101956



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 139     ctgctccatggtcacccctggtt 161
               |||||||| ||||||||||||||
Sbjct: 2943126 ctgctccaaggtcacccctggtt 2943148



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 88      gcttgcactaaacacggca 106
               |||||||||||||||||||
Sbjct: 3546484 gcttgcactaaacacggca 3546502



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>ref|XM_746381.1| Aspergillus fumigatus Af293 thiol methyltransferase 1
          (Afu4g13570) partial mRNA
          Length = 849

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ctgagctctgggataagag 40
          |||||||||||||||||||
Sbjct: 80 ctgagctctgggataagag 98



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>emb|Z83839.1|HS127L4 Human DNA sequence from clone RP1-127L4 on chromosome 22 Contains the
             3' end of the SLC5A1 gene for solute carrier family 5
             (sodiumglucose transporter)  member 1, an adaptin, beta
             1-like 1 pseudogene (ADTB1L1), an adaptin, beta 1-like 2
             pseudogene (ADTB1L2) and the 3' end of a novel gene,
             complete sequence
          Length = 47812

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    actgagctctgggataaga 39
             |||||||||||||||||||
Sbjct: 31772 actgagctctgggataaga 31790



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>emb|BX323048.4| Human DNA sequence from clone RP11-539G11 on chromosome 1 Contains the
             3' end of a novel gene (FLJ36760), complete sequence
          Length = 114676

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   acctctgctccatggtcac 153
             |||||||||||||||||||
Sbjct: 13784 acctctgctccatggtcac 13802



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>gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, complete sequence
          Length = 128000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   acctctgctccatggtcac 153
             |||||||||||||||||||
Sbjct: 96067 acctctgctccatggtcac 96085



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>gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, complete sequence
          Length = 163579

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 135    acctctgctccatggtcac 153
              |||||||||||||||||||
Sbjct: 148991 acctctgctccatggtcac 149009



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>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown,
             complete sequence
          Length = 183880

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    actgagctctgggataaga 39
             |||||||||||||||||||
Sbjct: 59282 actgagctctgggataaga 59300



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>gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059q13 In Meningioma
              Deletion Region, complete sequence
          Length = 173029

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     actgagctctgggataaga 39
              |||||||||||||||||||
Sbjct: 130584 actgagctctgggataaga 130566



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>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR26A07, complete sequence
          Length = 172436

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     tcaaccacccacagataca 62
              |||||||||||||||||||
Sbjct: 101551 tcaaccacccacagataca 101533



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>gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR15P13, complete sequence
          Length = 187049

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     tcaaccacccacagataca 62
              |||||||||||||||||||
Sbjct: 186888 tcaaccacccacagataca 186870



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>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence
          Length = 157544

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    cacagatacagtatcattt 71
             |||||||||||||||||||
Sbjct: 27225 cacagatacagtatcattt 27243



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     gcttgcactaaacacggca 106
              |||||||||||||||||||
Sbjct: 524292 gcttgcactaaacacggca 524310



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>emb|CR678465.9| Zebrafish DNA sequence from clone DKEY-234P10 in linkage group 19,
             complete sequence
          Length = 82040

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    aactgagctctgggataagagta 42
             |||||||||||| ||||||||||
Sbjct: 12743 aactgagctctgtgataagagta 12721



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>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete
             sequence
          Length = 304674

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    tcaaccacccacagataca 62
             |||||||||||||||||||
Sbjct: 12690 tcaaccacccacagataca 12672



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 47      accacccacagatacagta 65
               |||||||||||||||||||
Sbjct: 2845737 accacccacagatacagta 2845719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,445,828
Number of Sequences: 3902068
Number of extensions: 1445828
Number of successful extensions: 102762
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102472
Number of HSP's gapped (non-prelim): 286
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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