ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44c03 |
|---|---|
| Clone Library Name | barley_pub |
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 80.1 bits (196), Expect = 3e-15 Identities = 43/101 (42%), Positives = 65/101 (64%) Frame = -2 Query: 461 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 282 AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G LLKK Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 281 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 159 V++ D T EEAL FA+ LSD +KLR ++ Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 80.1 bits (196), Expect = 3e-15 Identities = 43/101 (42%), Positives = 65/101 (64%) Frame = -2 Query: 461 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 282 AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G LLKK Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 281 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 159 V++ D T EEAL FA+ LSD +KLR ++ Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 78.2 bits (191), Expect = 1e-14 Identities = 42/101 (41%), Positives = 65/101 (64%) Frame = -2 Query: 461 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 282 AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G LLKK Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344 Query: 281 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 159 V++ D T EEAL FA+ LS+ +KLR ++ Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLRANK 374
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 78.2 bits (191), Expect = 1e-14 Identities = 42/101 (41%), Positives = 64/101 (63%) Frame = -2 Query: 461 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 282 AS+ M D + + +FQA H + NYLR+Q+++L G T+ +D +++ANME L+ +G LLKK Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 281 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 159 V++ D T EEAL FA+ LSD +KLR ++ Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 77.8 bits (190), Expect = 1e-14 Identities = 43/103 (41%), Positives = 66/103 (64%) Frame = -2 Query: 467 SHASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLK 288 S AS+ M D + + FQAL + NYLR+Q+++LTG T+ +D +++ANM+ L+ +G LLK Sbjct: 292 SAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLK 351 Query: 287 KKVARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 159 K V++ D+ T EEAL FA+ LSD +KLR ++ Sbjct: 352 KSVSK-----------DNPETYEEALKRFAKLLSDRKKLRANK 383
>CACB2_BOVIN (Q9MZL5) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 603 Score = 32.0 bits (71), Expect = 0.80 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -1 Query: 345 YLHQ-GEHGGAHRNWQHVAQEESGSGEHRHRDLRAR 241 Y H+ +H HR+ H +E G GEHRHR+ R R Sbjct: 517 YSHEHADHYAPHRDHNH-REEPHGGGEHRHREPRHR 551
>NFAC3_HUMAN (Q12968) Nuclear factor of activated T-cells, cytoplasmic 3| (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx) Length = 1075 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -1 Query: 465 PC-KRRHGRHPRCYIISSTSH*EELPTHPGRLTHGSHILCGYLHQGEHGGA 316 PC KRRH CY S + H +P+ PG GS +L+ HGG+ Sbjct: 270 PCGKRRHSSAEVCYAGSLSPHHSPVPS-PGHSPRGSVTEDTWLNASVHGGS 319
>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 476 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 342 LHQGEHGGAHRNWQHVAQEESGSGEHRH 259 LH G HG AHR H E+G+ +H Sbjct: 108 LHHGGHGHAHREHSHGTSREAGAPGIKH 135
>HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide| Length = 59 Score = 29.3 bits (64), Expect = 5.2 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -1 Query: 339 HQGEHGGAHRNWQHVAQEESGSGEHRH 259 H+ +HGG H + H GEH H Sbjct: 3 HEEQHGGHHHHHHHTHHHHYHGGEHHH 29
>HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide| Length = 59 Score = 29.3 bits (64), Expect = 5.2 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -1 Query: 339 HQGEHGGAHRNWQHVAQEESGSGEHRH 259 H+ +HGG H + H GEH H Sbjct: 3 HEEQHGGHHHHHHHTHHHHYHGGEHHH 29
>CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) (Lambert-Eaton myasthenic syndrome antigen B) (MYSB) Length = 660 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 330 EHGGAHRNWQHVAQEESGSGEHRHRDLRAR 241 +H +HR+ H E GS +HRHR+ R R Sbjct: 580 DHYASHRDHNH-RDETHGSSDHRHRESRHR 608
>LRRN5_HUMAN (O75325) Leucine-rich repeats neuronal protein 5 precursor (Glioma| amplified on chromosome 1 protein) Length = 713 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Frame = -2 Query: 467 SHASADMVDIHAAILFQALHIEKNYL-RIQDDSLTGHTSSVDISTKANM------EALIG 309 S + A D HA +LH+E+N L R++D S G S ++ N A G Sbjct: 104 SFSDARDCDFHALPQLLSLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRAFSG 163 Query: 308 IGNMLLKKKVARVNIDTGIYEPVD 237 + N+L R+++++ + +D Sbjct: 164 LSNLL------RLHLNSNLLRAID 181
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%) Frame = +2 Query: 263 RCSPEPL-SS*ATCCQFR*AP--------PCSPWWRYPQRMCDP*VSRPGCVGSSSQCE 412 RC P + ++ A C+ R AP PC+P +P P V RPGC CE Sbjct: 175 RCEPPAVGAACARLCRSRSAPSRCGPGLRPCTP---FPDECEAPSVCRPGCSPEHGYCE 230
>ATPE_MYCGE (P47638) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 133 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/68 (26%), Positives = 33/68 (48%) Frame = -2 Query: 374 SLTGHTSSVDISTKANMEALIGIGNMLLKKKVARVNIDTGIYEPVDDEGTNEEALAHFAQ 195 ++ H + + + EA+IG G ML+KK A++ + ++ D+ NE + Sbjct: 44 AIQSHLCKIIFADQTKREAIIGAGLMLIKKTEAKIFTENFVF--ADEVDINET----LKR 97 Query: 194 KLSDERKL 171 K ERK+ Sbjct: 98 KTELERKI 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,776,911 Number of Sequences: 219361 Number of extensions: 1149242 Number of successful extensions: 3265 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3255 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
