ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OCS1_MAIZE (P24068) Ocs element-binding factor 1 (OCSBF-1) 65 1e-10
2K1199_MOUSE (Q8BI06) Protein KIAA1199 homolog precursor (Protein... 29 5.8
3MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (E... 28 9.9

>OCS1_MAIZE (P24068) Ocs element-binding factor 1 (OCSBF-1)|
          Length = 151

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 29/34 (85%), Positives = 32/34 (94%)
 Frame = -3

Query: 436 VNQVLRVVEEFSGVAMDIQEECPPDDPLLRPWQI 335
           VN+VLR+VEEFSGVAMDIQEE P DDPLLRPWQ+
Sbjct: 101 VNEVLRLVEEFSGVAMDIQEEMPADDPLLRPWQL 134



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>K1199_MOUSE (Q8BI06) Protein KIAA1199 homolog precursor (Protein 12H19.01.T7)|
          Length = 1361

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 418 VVEEFSGVAMDIQEECPPDDPLLRPW 341
           ++  FSG +  +  ECP   P L+PW
Sbjct: 21  LLANFSGASSAVATECPDQSPELQPW 46



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>MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase AquI alpha subunit)
           (M.AquI alpha subunit) (M.AquiA)
          Length = 248

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 275 IHPVMIGSIIQDPPCRS*AVAGKR 204
           ++P+ I  +I  PPC+S ++AGKR
Sbjct: 68  VNPLEIDLVIGGPPCQSFSLAGKR 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,471,423
Number of Sequences: 219361
Number of extensions: 592112
Number of successful extensions: 1492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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