ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473574.1| Oryza sativa (japonica cultivar-group), predic... 406 e-110
2dbj|AK120348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
3dbj|AK110251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
4dbj|AK065277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
6emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4,... 228 1e-56
7gb|BT024067.1| Zea mays clone EL01N0448C11 mRNA sequence 62 2e-06
8gb|AC121610.2| Mus musculus BAC clone RP23-326L12 from 10, compl... 46 0.12
9gb|AF117707.2|AF117707 Lycopersicon esculentum putative copper/z... 46 0.12
10gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complet... 44 0.46
11gb|AC116309.2| Homo sapiens chromosome 5 clone RP11-106J9, compl... 42 1.8
12gb|AC133436.2| Homo sapiens 3 BAC RP13-486I7 (Roswell Park Cance... 42 1.8
13emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chr... 42 1.8
14dbj|AP000888.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 42 1.8
15gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, compl... 40 7.1
16gb|AY196210.1| Solanum tuberosum copper chaperone precursor (CCS... 40 7.1
17gb|AC146564.2| Medicago truncatula clone mth2-67l12, complete se... 40 7.1
18gb|AC137510.33| Medicago truncatula clone mth2-8m7, complete seq... 40 7.1
19emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 i... 40 7.1
20gb|AC105162.11| Mus musculus chromosome 1, clone RP24-92O11, com... 40 7.1
21gb|DQ301630.1| Thanatephorus cucumeris strain TO4 ATP synthase s... 40 7.1
22gb|DQ301629.1| Thanatephorus cucumeris strain TO1 ATP synthase s... 40 7.1
23gb|DQ301628.1| Thanatephorus cucumeris strain SJ57 ATP synthase ... 40 7.1
24gb|DQ301627.1| Thanatephorus cucumeris strain SJ34 ATP synthase ... 40 7.1
25gb|DQ301624.1| Thanatephorus cucumeris strain SJ02 ATP synthase ... 40 7.1
26gb|DQ301620.1| Thanatephorus cucumeris strain CBS 346.84 ATP syn... 40 7.1
27gb|DQ301604.1| Thanatephorus cucumeris strain AG-4HGI ATP syntha... 40 7.1
28gb|DQ301598.1| Thanatephorus cucumeris strain AG-1-IA ATP syntha... 40 7.1
29gb|DQ301596.1| Ceratobasidium sp. CBS 700.82 ATP synthase subuni... 40 7.1
30gb|DQ301588.1| Ceratobasidium sp. CBS 346.84 ATP synthase subuni... 40 7.1
31dbj|AK165478.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 7.1
32ref|XM_678144.1| PREDICTED: Danio rerio similar to titin isoform... 40 7.1
33gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance... 40 7.1
34emb|AL714003.6| Zebrafish DNA sequence from clone BUSM1-167C3 in... 40 7.1
35emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chro... 40 7.1 
>ref|XM_473574.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 939

 Score =  406 bits (205), Expect = e-110
 Identities = 337/381 (88%)
 Strand = Plus / Minus

                                                                       
Query: 145 ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
           |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 939 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 880

                                                                       
Query: 205 aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
           ||| || || |||||||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 879 aaccccagcgcttcttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 820

                                                                       
Query: 265 tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
            ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 819 ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 760

                                                                       
Query: 325 tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggctt 384
           |||||| |||||||| || || ||||||||||||||| |||||||||||||||| |||||
Sbjct: 759 tgaaaattgggcttcacccttctctccagcttctagtgttcccaggtcaccaagaggctt 700

                                                                       
Query: 385 ctcagatagataatccggtggattatatactttgccagtactttctgcaccttttgtcaa 444
            |  |||  |||||||| ||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 699 attggatctataatccgatgggttatagactttgccagtactttctgcacctcttgtcaa 640

                                                                       
Query: 445 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagc 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggc 580

                                
Query: 505 ctcaactctcgccaattccat 525
            |||||| | |||||||||||
Sbjct: 579 ttcaactatagccaattccat 559
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>dbj|AK120348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064M11, full
            insert sequence
          Length = 1146

 Score =  406 bits (205), Expect = e-110
 Identities = 337/381 (88%)
 Strand = Plus / Minus

                                                                        
Query: 145  ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
            |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 1007 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 948

                                                                        
Query: 205  aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
            ||| || || |||||||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 947  aaccccagcgcttcttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 888

                                                                        
Query: 265  tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
             ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 887  ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 828

                                                                        
Query: 325  tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggctt 384
            |||||| |||||||| || || ||||||||||||||| |||||||||||||||| |||||
Sbjct: 827  tgaaaattgggcttcacccttctctccagcttctagtgttcccaggtcaccaagaggctt 768

                                                                        
Query: 385  ctcagatagataatccggtggattatatactttgccagtactttctgcaccttttgtcaa 444
             |  |||  |||||||| ||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 767  attggatctataatccgatgggttatagactttgccagtactttctgcacctcttgtcaa 708

                                                                        
Query: 445  atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 707  atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggc 648

                                 
Query: 505  ctcaactctcgccaattccat 525
             |||||| | |||||||||||
Sbjct: 647  ttcaactatagccaattccat 627



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaaacaagctttattcctcaaatgtattcatgcttattccaaatgttcagtaaatggttg 67
            ||||||||||||||||||||  ||||| |||||||||||||| |||||||||  ||||||
Sbjct: 1139 aaaacaagctttattcctcac-tgtatccatgcttattccaattgttcagtagttggttg 1081

                              
Query: 68   attgtttctacataactt 85
            ||||||||||||| ||||
Sbjct: 1080 attgtttctacattactt 1063
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>dbj|AK110251.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-H04, full
           insert sequence
          Length = 3493

 Score =  406 bits (205), Expect = e-110
 Identities = 337/381 (88%)
 Strand = Plus / Minus

                                                                       
Query: 145 ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
           |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 626 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 567

                                                                       
Query: 205 aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
           ||| || || |||||||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 566 aaccccagcgcttcttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 507

                                                                       
Query: 265 tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
            ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 506 ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 447

                                                                       
Query: 325 tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggctt 384
           |||||| |||||||| || || ||||||||||||||| |||||||||||||||| |||||
Sbjct: 446 tgaaaattgggcttcacccttctctccagcttctagtgttcccaggtcaccaagaggctt 387

                                                                       
Query: 385 ctcagatagataatccggtggattatatactttgccagtactttctgcaccttttgtcaa 444
            |  |||  |||||||| ||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 386 attggatctataatccgatgggttatagactttgccagtactttctgcacctcttgtcaa 327

                                                                       
Query: 445 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagc 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 326 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggc 267

                                
Query: 505 ctcaactctcgccaattccat 525
            |||||| | |||||||||||
Sbjct: 266 ttcaactatagccaattccat 246



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   aaaacaagctttattcctcaaatgtattcatgcttattccaaatgttcagtaaatggttg 67
           ||||||||||||||||||||  ||||| |||||||||||||| |||||||||  ||||||
Sbjct: 758 aaaacaagctttattcctcac-tgtatccatgcttattccaattgttcagtagttggttg 700

                             
Query: 68  attgtttctacataactt 85
           ||||||||||||| ||||
Sbjct: 699 attgtttctacattactt 682
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>dbj|AK065277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L14, full
           insert sequence
          Length = 1067

 Score =  391 bits (197), Expect = e-105
 Identities = 335/381 (87%)
 Strand = Plus / Minus

                                                                       
Query: 145 ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
           |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 928 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 869

                                                                       
Query: 205 aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
           ||| || || ||| |||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 868 aaccccagcgctttttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 809

                                                                       
Query: 265 tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
            ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 808 ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 749

                                                                       
Query: 325 tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggctt 384
           |||||| |||||||| || |||| |||||||| |||| |||||||||||||||| |||||
Sbjct: 748 tgaaaattgggcttcacccttttttccagcttgtagtgttcccaggtcaccaagaggctt 689

                                                                       
Query: 385 ctcagatagataatccggtggattatatactttgccagtactttctgcaccttttgtcaa 444
            |  |||  |||||||| ||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 688 attggatctataatccgatgggttatagactttgccagtactttctgcacctcttgtcaa 629

                                                                       
Query: 445 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagc 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 atccccaaattcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggc 569

                                
Query: 505 ctcaactctcgccaattccat 525
            |||||| | |||||||||||
Sbjct: 568 ttcaactatagccaattccat 548



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaaacaagctttattcctcaaatgtattcatgcttattccaaatgttcagtaaatggttg 67
            ||||||||||||||||||||  ||||| |||||||||||||| |||||||||  ||||||
Sbjct: 1060 aaaacaagctttattcctcac-tgtatccatgcttattccaattgttcagtagttggttg 1002

                              
Query: 68   attgtttctacataactt 85
            ||||||||||||| ||||
Sbjct: 1001 attgtttctacattactt 984
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Minus

                                                                            
Query: 145      ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
                |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 28851983 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 28851924

                                                                            
Query: 205      aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
                ||| || || |||||||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 28851923 aaccccagcgcttcttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 28851864

                                                                            
Query: 265      tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
                 ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 28851863 ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 28851804

                                                                           
Query: 325      tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggct 383
                |||||| |||||||| || || ||||||||||||||| |||||||||||||||| ||||
Sbjct: 28851803 tgaaaattgggcttcacccttctctccagcttctagtgttcccaggtcaccaagaggct 28851745



 Score =  198 bits (100), Expect = 1e-47
 Identities = 124/132 (93%)
 Strand = Plus / Minus

                                                                            
Query: 394      ataatccggtggattatatactttgccagtactttctgcaccttttgtcaaatccccaaa 453
                |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 28850399 ataatccgatgggttatagactttgccagtactttctgcacctcttgtcaaatccccaaa 28850340

                                                                            
Query: 454      ttcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagcctcaactct 513
                |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 28850339 ttcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggcttcaactat 28850280

                            
Query: 514      cgccaattccat 525
                 |||||||||||
Sbjct: 28850279 agccaattccat 28850268



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                            
Query: 8        aaaacaagctttattcctcaaatgtattcatgcttattccaaatgttcagtaaatggttg 67
                ||||||||||||||||||||  ||||| |||||||||||||| |||||||||  ||||||
Sbjct: 28852115 aaaacaagctttattcctcac-tgtatccatgcttattccaattgttcagtagttggttg 28852057

                                  
Query: 68       attgtttctacataactt 85
                ||||||||||||| ||||
Sbjct: 28852056 attgtttctacattactt 28852039
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>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04,
             complete sequence
          Length = 154865

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Minus

                                                                         
Query: 145   ttagctcgattcccaaatggtgacaccatcgcatgtacacagcttcttgtagttctcccc 204
             |||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 64045 ttagcttgactcccaaatggtgacaccatcacaggtgcacagcttcttgtagttctcgcc 63986

                                                                         
Query: 205   aacacccgcacttcttgcgaccacggcagctgcaatgcctgagtccgatttgtcctcggt 264
             ||| || || |||||||| | |||||||||||||||||| |  || ||| ||||||| ||
Sbjct: 63985 aaccccagcgcttcttgcaatcacggcagctgcaatgccaggatctgatctgtcctcagt 63926

                                                                         
Query: 265   tgcatacagcgcaatagagcgaccgatcaaatccacaactttcagtttctcttttgatcc 324
              ||||||| |||||||||||| || ||||| || |||||||||||||||||||||||  |
Sbjct: 63925 ggcatacaacgcaatagagcggccaatcaagtcaacaactttcagtttctcttttgaagc 63866

                                                                        
Query: 325   tgaaaactgggcttctccgttttctccagcttctagtattcccaggtcaccaaggggct 383
             |||||| |||||||| || || ||||||||||||||| |||||||||||||||| ||||
Sbjct: 63865 tgaaaattgggcttcacccttctctccagcttctagtgttcccaggtcaccaagaggct 63807



 Score =  198 bits (100), Expect = 1e-47
 Identities = 124/132 (93%)
 Strand = Plus / Minus

                                                                         
Query: 394   ataatccggtggattatatactttgccagtactttctgcaccttttgtcaaatccccaaa 453
             |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 62461 ataatccgatgggttatagactttgccagtactttctgcacctcttgtcaaatccccaaa 62402

                                                                         
Query: 454   ttcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtagcctcaactct 513
             |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 62401 ttcatttattgaccatccgtgtttaccaggtgatagaccactaaaagtggcttcaactat 62342

                         
Query: 514   cgccaattccat 525
              |||||||||||
Sbjct: 62341 agccaattccat 62330



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                         
Query: 8     aaaacaagctttattcctcaaatgtattcatgcttattccaaatgttcagtaaatggttg 67
             ||||||||||||||||||||  ||||| |||||||||||||| |||||||||  ||||||
Sbjct: 64177 aaaacaagctttattcctcac-tgtatccatgcttattccaattgttcagtagttggttg 64119

                               
Query: 68    attgtttctacataactt 85
             ||||||||||||| ||||
Sbjct: 64118 attgtttctacattactt 64101
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>gb|BT024067.1| Zea mays clone EL01N0448C11 mRNA sequence
          Length = 2351

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                           
Query: 28   aatgtattcatgcttattccaaatgttcagt 58
            |||||||||||||||||||||||||||||||
Sbjct: 2283 aatgtattcatgcttattccaaatgttcagt 2313
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>gb|AC121610.2| Mus musculus BAC clone RP23-326L12 from 10, complete sequence
          Length = 192060

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 456   catttattgaccatccgtgttta 478
             |||||||||||||||||||||||
Sbjct: 55615 catttattgaccatccgtgttta 55593
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>gb|AF117707.2|AF117707 Lycopersicon esculentum putative copper/zinc superoxide dismutase
           copper chaperone precursor (CCS) mRNA, partial cds;
           nuclear gene for chloroplast product
          Length = 1162

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 185 agcttcttgtagttctccccaacacccgcacttct 219
           ||||||||||||||||| ||||| || ||||||||
Sbjct: 886 agcttcttgtagttctcaccaaccccggcacttct 852
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>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence
          Length = 181720

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 329    aactgggcttctccgttttctccagc 354
              ||||||||||||| ||||||||||||
Sbjct: 113463 aactgggcttctcagttttctccagc 113488
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>gb|AC116309.2| Homo sapiens chromosome 5 clone RP11-106J9, complete sequence
          Length = 176112

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    tttattcctcaaatgtattcatgct 41
             ||||||||||| |||||||||||||
Sbjct: 75437 tttattcctcagatgtattcatgct 75413
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>gb|AC133436.2| Homo sapiens 3 BAC RP13-486I7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115667

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 445   atccccaaattcatttattga 465
             |||||||||||||||||||||
Sbjct: 86140 atccccaaattcatttattga 86120
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>emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chromosome 6, complete
              sequence
          Length = 201512

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 442    caaatccccaaattcatttattgac 466
              ||||||||||||||||| |||||||
Sbjct: 124772 caaatccccaaattcatatattgac 124796
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>dbj|AP000888.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1880F11
          Length = 166355

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 442   caaatccccaaattcatttattgac 466
             ||||||||||||||||| |||||||
Sbjct: 46910 caaatccccaaattcatatattgac 46934
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>gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, complete sequence
          Length = 173567

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aacttgtgtgtgtacaacat 100
             ||||||||||||||||||||
Sbjct: 51113 aacttgtgtgtgtacaacat 51094
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>gb|AY196210.1| Solanum tuberosum copper chaperone precursor (CCS) gene, complete
            cds; nuclear gene for chloroplast product
          Length = 3954

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 188  ttcttgtagttctccccaacacccgcacttct 219
            |||||||||||||| ||||| || ||||||||
Sbjct: 3707 ttcttgtagttctcaccaactcctgcacttct 3676
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>gb|AC146564.2| Medicago truncatula clone mth2-67l12, complete sequence
          Length = 128650

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 356   tctagtattcccaggtcaccaaggggct 383
             |||||| |||||||||||||||| ||||
Sbjct: 60698 tctagtgttcccaggtcaccaagtggct 60671
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>gb|AC137510.33| Medicago truncatula clone mth2-8m7, complete sequence
          Length = 108759

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 356   tctagtattcccaggtcaccaaggggct 383
             |||||| |||||||||||||||| ||||
Sbjct: 40805 tctagtgttcccaggtcaccaagtggct 40778
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>emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9,
              complete sequence
          Length = 214459

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    accaggtgatagaccactaa 497
              ||||||||||||||||||||
Sbjct: 149827 accaggtgatagaccactaa 149846
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>gb|AC105162.11| Mus musculus chromosome 1, clone RP24-92O11, complete sequence
          Length = 177420

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 67    gattgtttctacataacttgtgtgtgta 94
             ||||||| ||||||||||||||| ||||
Sbjct: 92824 gattgttactacataacttgtgtatgta 92851
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>gb|DQ301630.1| Thanatephorus cucumeris strain TO4 ATP synthase subunit 6-like
           (ATP6) gene, partial sequence; mitochondrial
          Length = 664

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 133 cttattccaaatgttcagta 114
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>gb|DQ301629.1| Thanatephorus cucumeris strain TO1 ATP synthase subunit 6-like
           (ATP6) gene, partial sequence; mitochondrial
          Length = 723

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 134 cttattccaaatgttcagta 115
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>gb|DQ301628.1| Thanatephorus cucumeris strain SJ57 ATP synthase subunit 6-like
           (ATP6) gene, partial sequence; mitochondrial
          Length = 707

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 142 cttattccaaatgttcagta 123
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>gb|DQ301627.1| Thanatephorus cucumeris strain SJ34 ATP synthase subunit 6-like
           (ATP6) gene, partial sequence; mitochondrial
          Length = 433

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 119 cttattccaaatgttcagta 100
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>gb|DQ301624.1| Thanatephorus cucumeris strain SJ02 ATP synthase subunit 6-like
           (ATP6) gene, partial sequence; mitochondrial
          Length = 708

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 124 cttattccaaatgttcagta 105
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>gb|DQ301620.1| Thanatephorus cucumeris strain CBS 346.84 ATP synthase subunit
           6-like (ATP6) gene, partial sequence; mitochondrial
          Length = 554

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 111 cttattccaaatgttcagta 92
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>gb|DQ301604.1| Thanatephorus cucumeris strain AG-4HGI ATP synthase subunit 6
           (ATP6) gene, partial cds; mitochondrial
          Length = 651

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 128 cttattccaaatgttcagta 109
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>gb|DQ301598.1| Thanatephorus cucumeris strain AG-1-IA ATP synthase subunit 6
           (ATP6) gene, partial cds; mitochondrial
          Length = 421

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 119 cttattccaaatgttcagta 100
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>gb|DQ301596.1| Ceratobasidium sp. CBS 700.82 ATP synthase subunit 6-like (ATP6)
           gene, partial sequence; mitochondrial
          Length = 679

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 553 cttattccaaatgttcagta 572
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>gb|DQ301588.1| Ceratobasidium sp. CBS 346.84 ATP synthase subunit 6-like (ATP6)
           gene, partial sequence; mitochondrial
          Length = 676

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cttattccaaatgttcagta 59
           ||||||||||||||||||||
Sbjct: 128 cttattccaaatgttcagta 109
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>dbj|AK165478.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530014A18 product:galactosylceramidase,
            full insert sequence
          Length = 4154

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   aacttgtgtgtgtacaacat 100
            ||||||||||||||||||||
Sbjct: 1488 aacttgtgtgtgtacaacat 1507
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>ref|XM_678144.1| PREDICTED: Danio rerio similar to titin isoform N2-B (LOC555594), mRNA
          Length = 38943

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   accaggtgatagaccactaa 497
             ||||||||||||||||||||
Sbjct: 25326 accaggtgatagaccactaa 25307
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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcttgtagttctccccaaca 208
             ||||||||||||||||||||
Sbjct: 33611 tcttgtagttctccccaaca 33630
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>emb|AL714003.6| Zebrafish DNA sequence from clone BUSM1-167C3 in linkage group 9,
             complete sequence
          Length = 136185

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   accaggtgatagaccactaa 497
             ||||||||||||||||||||
Sbjct: 29425 accaggtgatagaccactaa 29406
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>emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chromosome X, complete
              sequence
          Length = 178995

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 155    tcccaaatggtgacaccatcgcat 178
              ||||||||||||||||||| ||||
Sbjct: 103392 tcccaaatggtgacaccattgcat 103415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,926,358
Number of Sequences: 3902068
Number of extensions: 4926358
Number of successful extensions: 88847
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88759
Number of HSP's gapped (non-prelim): 83
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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