Clone Name | rbart44b07 |
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Clone Library Name | barley_pub |
>ref|XM_470444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 805 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 746 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 745 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 686 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 685 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 626 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 625 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 566
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence Length = 166005 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 64032 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 63973 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 63972 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 63913 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 63912 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 63853 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 63852 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 63793
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 35666254 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 35666195 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 35666194 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 35666135 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 35666134 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 35666075 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 35666074 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 35666015
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 35756327 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 35756268 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 35756267 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 35756208 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 35756207 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 35756148 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 35756147 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 35756088
>dbj|AK120043.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F05, full insert sequence Length = 1079 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 708 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 649 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 648 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 589 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 588 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 529 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 528 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 469
>dbj|AK102872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112B07, full insert sequence Length = 1151 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 823 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 764 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 763 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 704 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 703 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 644 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 643 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 584
>dbj|AK059849.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F12, full insert sequence Length = 1123 Score = 174 bits (88), Expect = 2e-40 Identities = 202/240 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| || || |||||| ||| Sbjct: 822 cttcaatcacaagttcttgaatgcagactcattagggtgcttgggagtaagcctcgccaa 763 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 762 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 703 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 702 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 643 Query: 368 gaggggtgtagccagccacgacattatctctgcctcgaagctgtctgaaccctgtcgcca 427 |||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 642 gaggggtgtagccagccatgacataatctctgcttcaaagctatctgaacctggtcgcca 583
>dbj|AK058371.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G06, full insert sequence Length = 361 Score = 153 bits (77), Expect = 6e-34 Identities = 179/213 (84%) Strand = Plus / Minus Query: 188 cttccatcacaagttcttgaacgcagactcgttagggagcttaggggtgagcctctccag 247 |||| |||||||||||||||| |||||||| |||||| |||| | || |||||| ||| Sbjct: 214 cttcaatcacaagttcttgaatgcagactcattagggtgcttgagagtaagcctcgccaa 155 Query: 248 caaggccttgttggagaagtgatcggcgtcgacaaagtagaagttcccttcggccctgaa 307 ||| |||||||| | |||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct: 154 caaagccttgttcgggaagtgctcggcatcaacaaaatagaagttcccttcagccctaaa 95 Query: 308 ggtgacgaaaggccggttagtctctgcgggcctgatgtcagcaaacttgatcgtcttctt 367 ||||| ||||| | ||| ||||||| ||||||| |||||||||||||| ||| | | Sbjct: 94 agtgacaaaaggtctgttggtctctggaggcctgacatcagcaaacttgattgtccttgt 35 Query: 368 gaggggtgtagccagccacgacattatctctgc 400 |||||||||||||||||| ||||| |||||||| Sbjct: 34 gaggggtgtagccagccatgacataatctctgc 2
>gb|AC008529.4|AC008529 Homo sapiens chromosome 5 clone CTC-475P15, complete sequence Length = 169557 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 gcctgatgtcagcaaacttgat 358 |||||||||||||||||||||| Sbjct: 71054 gcctgatgtcagcaaacttgat 71033
>emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chromosome 1 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 186710 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gcctgatgtcagcaaacttga 357 ||||||||||||||||||||| Sbjct: 33262 gcctgatgtcagcaaacttga 33242
>gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, complete sequence Length = 120910 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gcctgatgtcagcaaacttga 357 ||||||||||||||||||||| Sbjct: 84120 gcctgatgtcagcaaacttga 84100
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 caagattgttaagatccattg 30 ||||||||||||||||||||| Sbjct: 12772 caagattgttaagatccattg 12792
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 tattctcacaagtattagctacag 128 |||| ||||||||||||||||||| Sbjct: 159381 tattttcacaagtattagctacag 159358
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gggtgagcctctccagcaag 251 |||||||||||||||||||| Sbjct: 127398 gggtgagcctctccagcaag 127379
>emb|CR956382.7| Pig DNA sequence from clone CH242-231E9 on chromosome 6, complete sequence Length = 186091 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aataaaaatattccaaacca 51 |||||||||||||||||||| Sbjct: 87828 aataaaaatattccaaacca 87847
>emb|AL031746.9|PFMAL1P3 Plasmodium falciparum DNA from MAL1P3 Length = 67970 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 tattctcacaagtattagctacag 128 |||| ||||||||||||||||||| Sbjct: 24076 tattttcacaagtattagctacag 24053
>emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in linkage group 9, complete sequence Length = 176022 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tgcaataaaaatattccaaa 48 |||||||||||||||||||| Sbjct: 52448 tgcaataaaaatattccaaa 52467
>gb|BC033908.1| Homo sapiens cDNA clone IMAGE:4828604 Length = 3868 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 1151 gaagctgtctgaaccctgtc 1170
>gb|AC055845.15| Homo sapiens chromosome 11, clone RP11-682B13, complete sequence Length = 155304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 acatattctcacaagtatta 121 |||||||||||||||||||| Sbjct: 125086 acatattctcacaagtatta 125067
>gb|AC068299.21| Homo sapiens 3 BAC RP11-560F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70466 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 65565 gaagctgtctgaaccctgtc 65584
>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence Length = 170363 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 75998 gaagctgtctgaaccctgtc 75979
>gb|AC025175.4| Homo sapiens chromosome 5 clone CTD-2081C10, complete sequence Length = 166907 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cagccaggttcaagagcaca 168 |||||||||||||||||||| Sbjct: 11121 cagccaggttcaagagcaca 11102
>gb|AC024571.5| Homo sapiens chromosome 5 clone CTD-2220M16, complete sequence Length = 109134 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cagccaggttcaagagcaca 168 |||||||||||||||||||| Sbjct: 89458 cagccaggttcaagagcaca 89439
>gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, complete sequence Length = 168285 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 12215 gaagctgtctgaaccctgtc 12234
>gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6, complete sequence Length = 106514 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 91600 gaagctgtctgaaccctgtc 91581
>dbj|AP000049.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 20/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataccgtatactacatatt 108 |||||||||||||||||||| Sbjct: 80387 gataccgtatactacatatt 80406
>dbj|AP001718.1| Homo sapiens genomic DNA, chromosome 21q, section 62/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataccgtatactacatatt 108 |||||||||||||||||||| Sbjct: 59148 gataccgtatactacatatt 59167
>dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence Length = 164795 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 157086 gaagctgtctgaaccctgtc 157067
>gb|M19173.1|PFARGEB P.falciparum 18S ribosomal RNA not in asexual parasites Length = 2040 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 tattctcacaagtattagctacag 128 |||| ||||||||||||||||||| Sbjct: 181 tattttcacaagtattagctacag 158
>emb|AL929365.1|PF13PB1 Plasmodium falciparum chromosome 13, unmapped contig Length = 18168 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tattctcacaagtattagctacag 128 |||| ||||||||||||||||||| Sbjct: 8892 tattttcacaagtattagctacag 8915
>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence Length = 183967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaagctgtctgaaccctgtc 423 |||||||||||||||||||| Sbjct: 66169 gaagctgtctgaaccctgtc 66150
>dbj|AP000193.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 20/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataccgtatactacatatt 108 |||||||||||||||||||| Sbjct: 16974 gataccgtatactacatatt 16993
>dbj|AP000311.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:130N6, complete sequence Length = 125242 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataccgtatactacatatt 108 |||||||||||||||||||| Sbjct: 80387 gataccgtatactacatatt 80406
>dbj|AP000117.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 20/20 Length = 151516 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataccgtatactacatatt 108 |||||||||||||||||||| Sbjct: 16974 gataccgtatactacatatt 16993 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,677,941 Number of Sequences: 3902068 Number of extensions: 3677941 Number of successful extensions: 60197 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60135 Number of HSP's gapped (non-prelim): 62 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)