ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MET31_YEAST (Q03081) Transcriptional regulator MET31 (Methionine... 28 9.2
2FBXL8_MOUSE (Q8CIG9) F-box/LRR-repeat protein 8 (F-box and leuci... 28 9.2

>MET31_YEAST (Q03081) Transcriptional regulator MET31 (Methionine-requiring|
           protein 31)
          Length = 177

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 237 NTPTHTDPIINELRYR 284
           ++PTHTDPII EL +R
Sbjct: 26  SSPTHTDPIIRELLHR 41



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>FBXL8_MOUSE (Q8CIG9) F-box/LRR-repeat protein 8 (F-box and leucine-rich repeat|
           protein 8) (F-box protein FBL8)
          Length = 374

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
 Frame = +1

Query: 100 TVGPGTPLT-HY*SQLRTTHIRLLARP------------CTQLRDVHCAPTRRRSTTHEI 240
           TVGP    T HY   LR   +R  A P            C  LR++HC    R S     
Sbjct: 288 TVGPVRFATRHYAETLRALEVRASASPELHTALEELAARCAGLREIHCFCVVRPSVLDAF 347

Query: 241 RPH 249
           R H
Sbjct: 348 RAH 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,359,249
Number of Sequences: 219361
Number of extensions: 937317
Number of successful extensions: 2220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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