ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 46 6e-05
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 41 0.001
3CRF1_YARLI (P45815) Copper resistance protein CRF1 31 1.9
4OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-li... 30 3.3
5Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 29 7.3
6CD177_HUMAN (Q8N6Q3) CD177 antigen precursor (Polycythemia rubra... 28 9.6

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = -2

Query: 477 ATEVMSGTKIFDPVKTPLLAAWMDRFSELDAAKAALP-EVDRVVEF 343
           A + + G ++ DP +TP LAAW +RF   DAAK  +P + D+++EF
Sbjct: 178 AIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -2

Query: 477 ATEVMSGTKIFDPVKTPLLAAWMDRFSELDAAKAALPEVDRVVEF 343
           A E + G  + D   TPLL  W  RF+   AAK  LP+ ++VV+F
Sbjct: 177 ACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>CRF1_YARLI (P45815) Copper resistance protein CRF1|
          Length = 411

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 306 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPPRAES 434
           QQ Q   P  +  +  P  P+ATP   HRA  + PS+ P+ +S
Sbjct: 146 QQPQMPTPVHTTNVTTP--PVATPTHSHRALSTTPSLSPQPQS 186



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>OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-like protein|
           F6)
          Length = 311

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 154 VQFYTRTSTKSKQIFWDRGNIIN*SLFERNMHFSYSMGLTFL*YLLVVRSNNSGSSLCLP 333
           + F T    K+   F  RG +I+ +     M+F +S+G T   +LL V + +   ++CLP
Sbjct: 74  IWFTTACVPKTLATFAPRGGVISLAGCATQMYFVFSLGCTEY-FLLAVMAYDRYLAICLP 132

Query: 334 L 336
           L
Sbjct: 133 L 133



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>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 306 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPPR 425
           QQ  Q  P    Q +PP QP   PP Q       P  PP+
Sbjct: 101 QQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPPQQPPQ 140



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>CD177_HUMAN (Q8N6Q3) CD177 antigen precursor (Polycythemia rubra vera protein|
           1) (PRV-1) (NB1 glycoprotein) (NB1 GP) (Human neutrophil
           alloantigen 2a) (HNA-2a)
          Length = 437

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 STTLSTSGNAAFAASSSLKRSIHAAKSGVLTGS 445
           ST + T G +   A +S K +IH+A  GVL  S
Sbjct: 257 STLVGTKGCSTVGAQNSQKTTIHSAPPGVLVAS 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,615,680
Number of Sequences: 219361
Number of extensions: 1138325
Number of successful extensions: 2760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2756
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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