ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 876 bits (442), Expect = 0.0 Identities = 505/526 (96%) Strand = Plus / Minus Query: 1 caatcaacaatacatcgccttacacgtacgtacatataggtacaatgatttgctgcggca 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1150 caatcaacaatacattgccttacacgtacgtacatataggtacaatgatttgctgcggca 1091 Query: 61 gtacgtgtagatagaaaggtttcctgcagcagcgaatctaaagccgttttggtggatggg 120 ||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| |||| Sbjct: 1090 gtacgtgtagatacaaagatttcctgcagcagcgaatctaaggccgctttggtgaatgga 1031 Query: 121 taacaaatctaatctcgaattaggtgattttggcgaagctacaacgttggtcagacagga 180 ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1030 taagaaatttaatctcgaattaggtgattttggcgaagctataacgttggtcagacagga 971 Query: 181 tgatcttattatacattgttctccctttatttcgacgaaattctatcgatcagatgctct 240 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 970 tgatcttattatacattgttctccctttatttcgacgaaatagtatcgatcagatgctct 911 Query: 241 gcagcctgccgttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccct 300 ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 910 gcagcctgccgttcccgctgaagatccggttgaggatggccgccagcctcaagcccccct 851 Query: 301 gagcgagcctcttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgt 360 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 850 gggcgagcctcttctgaacgaccggcagcgctttgaagtagtactcatctcctagggtgt 791 Query: 361 cgtcctgctcgacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtact 420 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 790 cgtcctgctcgacgccctcgtaggcgtcgcatgccagcaccgcgctctcctgggcgtact 731 Query: 421 tctcagcgcaggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggacc 480 | || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 730 tttcggcgcaggtcgtggttttgctgcggcacgtctcccactgcttctcctcactggacc 671 Query: 481 agtcgtcggtgatgttgcgctggatggactcgatcatggcgtcctg 526 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 agtcgtcggtgatgttgcgctggatggactcgatcatggcgtcctg 625
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 387 bits (195), Expect = e-104 Identities = 303/337 (89%), Gaps = 4/337 (1%) Strand = Plus / Minus Query: 193 acattgttctccctttatttcgacgaaattctatcgatcagatgctctgcagcctgccgt 252 ||||| |||| |||||||||||| |||||| | ||||||||||||||||||| |||||| Sbjct: 967 acattcttcttcctttatttcgatgaaattgca-cgatcagatgctctgcagcttgccgt 909 Query: 253 tc---ccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcc 309 || ||||||||||||| ||||||||||||||||||||| ||||| |||||||||| || Sbjct: 908 tcttcccgctgaagatccggttgaggatcgccgccagcctgacgccgccctgagcgatcc 849 Query: 310 tcttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgtcgtcctgct 369 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 848 gcttctgaacgaccggcagcgccttgaagtagtactcatctcctaaggtggagtcctgct 789 Query: 370 cgacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtacttctcagcgc 429 |||||||| |||||||||||| |||||||| || ||||||| |||||||| ||||||| Sbjct: 788 tgacgcccttgtacgcgtcgcaggccagcactgcactctcctcagcgtacttgtcagcgc 729 Query: 430 aggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggaccagtcgtcgg 489 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 728 aggtcttggttctgctgcggcacgcctcccactgcttctcctcgctggaccagtcctcgg 669 Query: 490 tgatgttgcgctggatggactcgatcatggcgtcctg 526 ||||||| |||||||||| || |||||||| |||||| Sbjct: 668 tgatgttacgctggatggccttgatcatggtgtcctg 632 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 8 caatacatcgccttacacgtacgtacatataggtacaatgatttgct 54 ||||||||| || ||||| ||||| |||| || |||||||||||||| Sbjct: 1112 caatacatcaccatacacttacgttcatacagatacaatgatttgct 1066
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 262 bits (132), Expect = 1e-66 Identities = 262/304 (86%), Gaps = 6/304 (1%) Strand = Plus / Minus Query: 229 atcagatgctctgcagcctgc---cgttcccgctgaagatcctgttgaggatcgccgcca 285 ||||||||||||||||||||| ||||| ||||||||| ||| |||||| |||||| Sbjct: 956 atcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcaccgcca 897 Query: 286 gcctcacgcccccctgagcgagcctcttctgaacgaccggcagcgccttgaagtagtact 345 |||||||||| |||||||| | |||||||| || ||||||| |||| |||||| || | Sbjct: 896 gcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagtaatagt 837 Query: 346 catctcctagggtgtcgtcctgctcgacgccctcgtacgcgtcgcatgccagcaccgcgc 405 | ||||||| ||||||| | |||||||||||||||||||||||||| ||||||| |||| Sbjct: 836 cgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaatgcgc 777 Query: 406 tctcctgggcgtacttctcagcgcagg---tcgtggttttgctgcggcacgcctcccact 462 |||||| ||||||||| || ||||||| || ||||| |||||| |||||||||||| | Sbjct: 776 tctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctcccatt 717 Query: 463 gcttctcctcactggaccagtcgtcggtgatgttgcgctggatggactcgatcatggcgt 522 |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct: 716 gcttctcctcgctggaccagtcatcggtgatgttgcgctggatggcctcgatcatggtgt 657 Query: 523 cctg 526 |||| Sbjct: 656 cctg 653
>gb|AY108503.1| Zea mays PCO102923 mRNA sequence Length = 476 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 264 atcctgttgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacgacc 323 ||||||||||||||||| |||||||| ||||| || || |||| |||||||||||| ||| Sbjct: 105 atcctgttgaggatcgcggccagcctgacgcctccttgcgcgatcctcttctgaaccacc 46 Query: 324 ggcagcgc 331 |||||||| Sbjct: 45 ggcagcgc 38
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 75.8 bits (38), Expect = 1e-10 Identities = 194/246 (78%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 310 ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | ||| Sbjct: 855 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 796 Query: 311 cttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgtcgtcctgctc 370 ||||||||| || ||||| || |||| | || |||||| ||| |||| || ||||| Sbjct: 795 cttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctc 736 Query: 371 gacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtacttctcagcgca 430 || ||||||||||| | ||| || ||| || ||||||| ||||||||| || || || Sbjct: 735 aacaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcaca 676 Query: 431 ggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggaccagtcgtcggt 490 ||| | || ||| ||||| | |||||||||||||||||| ||||||| || || || Sbjct: 675 agtctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatcagt 616 Query: 491 gatgtt 496 |||||| Sbjct: 615 gatgtt 610
>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full insert sequence Length = 484 Score = 75.8 bits (38), Expect = 1e-10 Identities = 194/246 (78%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 310 ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | ||| Sbjct: 256 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 197 Query: 311 cttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgtcgtcctgctc 370 ||||||||| || ||||| || |||| | || |||||| ||| |||| || ||||| Sbjct: 196 cttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctc 137 Query: 371 gacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtacttctcagcgca 430 || ||||||||||| | ||| || ||| || ||||||| ||||||||| || || || Sbjct: 136 aacaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcaca 77 Query: 431 ggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggaccagtcgtcggt 490 ||| | || ||| ||||| | |||||||||||||||||| ||||||| || || || Sbjct: 76 agtctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatcagt 17 Query: 491 gatgtt 496 |||||| Sbjct: 16 gatgtt 11
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 310 ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | ||| Sbjct: 62466 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 62407 Query: 311 cttctgaacgaccggcag 328 ||||||||| || ||||| Sbjct: 62406 cttctgaacaacaggcag 62389
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 310 ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | ||| Sbjct: 33290205 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 33290146 Query: 311 cttctgaacgaccggcag 328 ||||||||| || ||||| Sbjct: 33290145 cttctgaacaacaggcag 33290128
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 67.9 bits (34), Expect = 3e-08 Identities = 193/246 (78%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 310 ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | ||| Sbjct: 881 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 822 Query: 311 cttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgtcgtcctgctc 370 ||||||||| || ||||| || |||| | || |||||| ||| |||| || ||||| Sbjct: 821 cttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctc 762 Query: 371 gacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtacttctcagcgca 430 || ||||| ||||| | ||| || ||| || ||||||| ||||||||| || || || Sbjct: 761 aacaccctcatacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcaca 702 Query: 431 ggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggaccagtcgtcggt 490 ||| | || ||| ||||| | |||||||||||||||||| ||||||| || || || Sbjct: 701 agtctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatcagt 642 Query: 491 gatgtt 496 |||||| Sbjct: 641 gatgtt 636
>gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence Length = 213541 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 agtagtactcatctcctagggt 358 |||||||||||||||||||||| Sbjct: 28416 agtagtactcatctcctagggt 28395
>gb|AC020926.8| Homo sapiens chromosome 16 clone CTD-2152G12, complete sequence Length = 93288 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 agtagtactcatctcctagggt 358 |||||||||||||||||||||| Sbjct: 47555 agtagtactcatctcctagggt 47534
>dbj|AB029755.1| Paralichthys olivaceus mRNA for elastase 1 precursor, complete cds Length = 960 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 501 tggatggactcgatcatggcgt 522 |||||||||||||||||||||| Sbjct: 784 tggatggactcgatcatggcgt 805
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 aggatcgccgccagcctcacgcccc 297 ||||||||||||||| ||||||||| Sbjct: 3331322 aggatcgccgccagcgtcacgcccc 3331346
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 tgctctgcagcctgccgttcccgct 259 |||||||||||||||||| |||||| Sbjct: 2127589 tgctctgcagcctgccgtgcccgct 2127565
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttatttcgacgaaattctat 226 ||||||||||||||||||||| Sbjct: 1835409 tttatttcgacgaaattctat 1835429
>gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, complete sequence Length = 156293 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ggcacgcctcccactgcttct 468 ||||||||||||||||||||| Sbjct: 91578 ggcacgcctcccactgcttct 91598
>gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, complete sequence Length = 189238 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ggcacgcctcccactgcttct 468 ||||||||||||||||||||| Sbjct: 39689 ggcacgcctcccactgcttct 39669
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aaggtttcctgcagcagcga 95 |||||||||||||||||||| Sbjct: 2472927 aaggtttcctgcagcagcga 2472908
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gtttcctgcagcagcgaatc 98 |||||||||||||||||||| Sbjct: 3422119 gtttcctgcagcagcgaatc 3422138
>ref|XM_536374.2| PREDICTED: Canis familiaris similar to CG14043-PA (LOC479232), mRNA Length = 2669 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 gatcgccgccagcctcacgcccccctgagcga 306 |||| |||||||||||||| ||||||| |||| Sbjct: 546 gatcaccgccagcctcacggccccctgggcga 515
>emb|BX296557.35| Zebrafish DNA sequence from clone CH211-284O1 in linkage group 7, complete sequence Length = 173360 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgt 270 |||||||||||||||||||| Sbjct: 13671 gttcccgctgaagatcctgt 13652
>gb|AF293355.2| Streptomyces collinus DSM2012 rubrinomycin gene cluster, complete sequence Length = 32634 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tgccagcaccgcgctctcct 411 |||||||||||||||||||| Sbjct: 6843 tgccagcaccgcgctctcct 6824
>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence Length = 205998 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cttacacgtacgtacatata 38 |||||||||||||||||||| Sbjct: 48866 cttacacgtacgtacatata 48885
>gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of the complete genome Length = 11136 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgtcctgctcgacgccctcg 380 |||||||||||||||||||| Sbjct: 1985 cgtcctgctcgacgccctcg 1966
>gb|AC011348.4| Homo sapiens chromosome 5 clone CTC-303E13, complete sequence Length = 110104 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cattgttctccctttatttc 213 |||||||||||||||||||| Sbjct: 71061 cattgttctccctttatttc 71080
>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14, complete sequence Length = 198761 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gttcccgctgaagatcctgt 270 |||||||||||||||||||| Sbjct: 126958 gttcccgctgaagatcctgt 126977
>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18, complete sequence Length = 243552 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gttcccgctgaagatcctgt 270 |||||||||||||||||||| Sbjct: 137491 gttcccgctgaagatcctgt 137472
>gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-90E5, complete sequence Length = 186517 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cttacacgtacgtacatata 38 |||||||||||||||||||| Sbjct: 132817 cttacacgtacgtacatata 132836
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cttacacgtacgtacatata 38 |||||||||||||||||||| Sbjct: 181225 cttacacgtacgtacatata 181206
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gtcggtgatgttgcgctgga 504 |||||||||||||||||||| Sbjct: 1877459 gtcggtgatgttgcgctgga 1877440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,271,871 Number of Sequences: 3902068 Number of extensions: 3271871 Number of successful extensions: 61033 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60668 Number of HSP's gapped (non-prelim): 362 length of query: 526 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 503 effective length of database: 17,143,297,704 effective search space: 8623078745112 effective search space used: 8623078745112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
