ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44b03 |
|---|---|
| Clone Library Name | barley_pub |
>PFTB_PEA (Q04903) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 419 Score = 113 bits (282), Expect = 3e-25 Identities = 49/68 (72%), Positives = 58/68 (85%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 FCGLAAM+L+ EV +LDLP L+ WV FRQG ECGFQGRTNKLVDGCYSFWQG A+AL Q+ Sbjct: 198 FCGLAAMILIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQR 257 Query: 332 LMTVVAEQ 309 L +++ EQ Sbjct: 258 LHSIIDEQ 265
>PFTB_ARATH (Q38920) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) (Enhanced response to abscisic acid 1) Length = 404 Score = 94.4 bits (233), Expect = 2e-19 Identities = 41/61 (67%), Positives = 50/61 (81%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 +CGLAAM+L+NEV++L+L SL+ W RQGVE GFQGRTNKLVDGCY+FWQ A L Q+ Sbjct: 183 YCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQR 242 Query: 332 L 330 L Sbjct: 243 L 243
>PFTB_RAT (Q02293) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALAQ 336 FCGLAA+V+L + L+L SL+ WV RQ E GFQGR NKLVDGCYSFWQ + L Sbjct: 253 FCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 312 Query: 335 KLM 327 + + Sbjct: 313 RAL 315
>PFTB_MOUSE (Q8K2I1) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALAQ 336 FCGLAA+V+L + L+L SL+ WV RQ E GFQGR NKLVDGCYSFWQ + L Sbjct: 253 FCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 312 Query: 335 KLM 327 + + Sbjct: 313 RAL 315
>PFTB_BOVIN (P49355) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALAQ 336 FCGLAA+V+L + L+L SL+ WV RQ E GFQGR NKLVDGCYSFWQ + L Sbjct: 253 FCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 312 Query: 335 KLM 327 + + Sbjct: 313 RAL 315
>PFTB_HUMAN (P49356) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 72.0 bits (175), Expect = 9e-13 Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALAQ 336 FCGLAA+V+L L+L SL+ WV RQ E GFQGR NKLVDGCYSFWQ + L Sbjct: 253 FCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 312 Query: 335 KLM 327 + + Sbjct: 313 RAL 315
>RAM1_YEAST (P22007) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 431 Score = 59.3 bits (142), Expect = 6e-09 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALAQ 336 FC A++ +L ++++++ L+ W + RQ E GF GR+NKLVDGCYSFW G + A+ + Sbjct: 263 FCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILE 322
>PFTB_SCHPO (O13782) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase) (FTase-beta) Length = 382 Score = 56.2 bits (134), Expect = 5e-08 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVEC-GFQGRTNKLVDGCYSFWQGAA 351 FC LAA+ LL ++ L+ L W+ RQ GF GR+NKLVDGCYS+W GA+ Sbjct: 209 FCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGAS 263
>PGT1_RAT (P53610) Geranylgeranyl transferase type-1 beta subunit (EC| 2.5.1.59) (Geranylgeranyl transferase type I beta subunit) (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) Length = 377 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKL----DLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIA 345 FCG+A++ L+ ++E++ +L + W RQ + G+ GR NK VD CYSFW GA + Sbjct: 224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLK 281 Query: 344 L 342 L Sbjct: 282 L 282
>PGT1_MOUSE (Q8BUY9) Geranylgeranyl transferase type-1 beta subunit (EC| 2.5.1.59) (Geranylgeranyl transferase type I beta subunit) (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) Length = 377 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKL----DLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIA 345 FCG+A++ L+ ++E++ +L + W RQ + G+ GR NK VD CYSFW GA + Sbjct: 224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLK 281 Query: 344 L 342 L Sbjct: 282 L 282
>PGT1_HUMAN (P53609) Geranylgeranyl transferase type-1 beta subunit (EC| 2.5.1.59) (Geranylgeranyl transferase type I beta subunit) (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) Length = 377 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKL----DLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIA 345 FCG+A++ L+ ++E++ +L + W RQ + G+ GR NK VD CYSFW GA + Sbjct: 224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLK 281 Query: 344 L 342 L Sbjct: 282 L 282
>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC| 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 335 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/61 (34%), Positives = 35/61 (57%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 +C + A+ + ++++D W+AFRQ G GR KL D CYS+W A++A+ + Sbjct: 201 YCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGR 260 Query: 332 L 330 L Sbjct: 261 L 261
>PTB1_SCHPO (P46960) Type-2 proteins geranylgeranyltransferase beta subunit (EC| 2.5.1.60) (Type II proteins geranylgeranyltransferase beta subunit) (Type II protein geranyl-geranyltransferase beta subunit) (GGTase-II-beta) Length = 311 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 F +AA+ +LN+++ +D L W++ RQ G GR KL D CY +W + +A+ K Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGK 240 Query: 332 L 330 L Sbjct: 241 L 241
>BET2_CANAL (O93830) Type-2 proteins geranylgeranyltransferase beta subunit (EC| 2.5.1.60) (Type II proteins geranylgeranyltransferase beta subunit) (Type II protein geranyl-geranyltransferase beta subunit) (GGTase-II-beta) (PGGT) (YPT1/SEC4 proteins geran Length = 341 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPS----LIGWVAFRQGVECG-FQGRTNKLVDGCYSFWQGAAI 348 F + A+ ++N+++ LD+ + LI W+ RQ + G F GR KL D CYS+W +++ Sbjct: 201 FTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSL 260 Query: 347 ALAQK 333 ++ ++ Sbjct: 261 SILKR 265
>CWG2_SCHPO (P32434) Type-1 protein geranylgeranyltransferase beta subunit (EC| 2.5.1.59) (Type I protein geranylgeranyltransferase beta subunit) (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) (PGGT) Length = 355 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/41 (46%), Positives = 25/41 (60%) Frame = -1 Query: 452 LIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQKL 330 LI W+A RQ G GRTNK VD CY++W +++ L L Sbjct: 237 LIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDAL 277
>BET2_YEAST (P20133) Type-2 proteins geranylgeranyltransferase beta subunit (EC| 2.5.1.60) (Type II proteins geranylgeranyltransferase beta subunit) (Type II protein geranyl-geranyltransferase beta subunit) (GGTase-II-beta) (PGGT) (YPT1/SEC4 proteins geran Length = 325 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLD---LPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIAL 342 F L A+ + N+++ L L + W+ RQ E G GR +KL D CYS+W +++A+ Sbjct: 188 FTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAI 247 Query: 341 AQKL 330 +L Sbjct: 248 IGRL 251
>CAL1_YEAST (P18898) Type-1 proteins geranylgeranyltransferase beta subunit (EC| 2.5.1.59) (Type I proteins geranylgeranyltransferase beta subunit) (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) (PGGT) (RAS proteins geranylgeranyl Length = 376 Score = 37.7 bits (86), Expect = 0.019 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 22/71 (30%) Frame = -1 Query: 509 CGLAAMVLLNEVEKLD---LPSLIGWVAFRQ-------------------GVECGFQGRT 396 C L+ + LL+ +EKL I W+ RQ + GFQGR Sbjct: 222 CALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQGRE 281 Query: 395 NKLVDGCYSFW 363 NK D CY+FW Sbjct: 282 NKFADTCYAFW 292
>PGTB_RAT (Q08603) Geranylgeranyl transferase type-2 beta subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II beta subunit) (Rab geranylgeranyltransferase beta subunit) (Rab geranyl-geranyltransferase beta subunit) (Rab GG transferase beta) (Rab GGT Length = 331 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 +C + + +++ +++ L W+ RQ G GR KL D CYS+W A++ + + Sbjct: 195 YCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGR 254 Query: 332 LMTVVAEQ 309 L + E+ Sbjct: 255 LHWIDREK 262
>PGTB_HUMAN (P53611) Geranylgeranyl transferase type-2 beta subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II beta subunit) (Rab geranylgeranyltransferase beta subunit) (Rab geranyl-geranyltransferase beta subunit) (Rab GG transferase beta) (Rab G Length = 331 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 +C + + +++ +++ L W+ RQ G GR KL D CYS+W A++ + + Sbjct: 195 YCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGR 254 Query: 332 LMTVVAEQ 309 L + E+ Sbjct: 255 LHWIDREK 262
>PGTB_MOUSE (P53612) Geranylgeranyl transferase type-2 beta subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II beta subunit) (Rab geranylgeranyltransferase beta subunit) (Rab geranyl-geranyltransferase beta subunit) (Rab GG transferase beta) (Rab G Length = 339 Score = 35.4 bits (80), Expect = 0.092 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = -1 Query: 512 FCGLAAMVLLNEVEKLDLPSLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALAQK 333 +C + + +++ +++ L W+ Q GR KL D CYS+W A++ + + Sbjct: 203 YCCTGFLAITSQLHQVNSDLLGWWLCEAQLPSGALNGRREKLPDVCYSWWVLASLKIIGR 262 Query: 332 LMTVVAEQ 309 L +V+E+ Sbjct: 263 LHWIVSEK 270
>PUS3_YEAST (P31115) tRNA pseudouridine synthase 3 (EC 5.4.99.-) (tRNA-uridine| isomerase 3) (tRNA pseudouridylate synthase 3) (Depressed growth-rate protein DEG1) Length = 442 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 366 KGVATINQFICPSLESTFHSLTKCHPANQARQIEFLHFIKQ 488 KGV+ +NQ I + S + P N +R+I ++H + Q Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQ 192
>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor| (Interleukin-3 receptor class II beta chain) (Colony-stimulating factor 2 receptor, beta 2 chain) Length = 878 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 445 AGWHFVKEWNVDSKDGQINWL 383 +G HF+ EW+V D Q++WL Sbjct: 148 SGDHFLLEWSVSLGDSQVSWL 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,927,313 Number of Sequences: 219361 Number of extensions: 1291384 Number of successful extensions: 2670 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2665 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
