ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
2dbj|AK071486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
3gb|AY104288.1| Zea mays PCO074498 mRNA sequence 194 2e-46
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
5dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
6gb|U73203.1|NGU73203 Nicotiana glutinosa farnesyltransferase bet... 74 5e-10
7ref|NM_191123.1| Oryza sativa (japonica cultivar-group), predic... 70 8e-09
8gb|U83708.1|LEU83708 Lycopersicon esculentum farnesyl protein tr... 68 3e-08
9gb|U75644.1|U75644 Lycopersicon esculentum farnesyl-protein tran... 66 1e-07
10gb|AF389849.1| Catharanthus roseus farnesyltransferase beta subu... 64 5e-07
11gb|AY586550.1| Catharanthus roseus farnesyltransferase beta subu... 64 5e-07
12gb|L08664.1|PEABFARNES Pea farnesyltransferase beta-subunit mRNA... 60 7e-06
13gb|AY162319.1| Cryptococcus neoformans var. neoformans protein-f... 50 0.007
14ref|NM_123392.1| Arabidopsis thaliana ERA1 (ENHANCED RESPONSE TO... 46 0.11
15gb|AY099623.1| Arabidopsis thaliana beta subunit of protein farn... 46 0.11
16gb|AF214106.1|AF214106 Arabidopsis thaliana farnesyltransferase ... 46 0.11
17dbj|AB010699.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.11
18gb|U46574.1|ATU46574 Arabidopsis thaliana protein farnesyl trans... 46 0.11
19gb|U44849.1|ATU44849 Arabidopsis thaliana beta subunit of protei... 46 0.11
20dbj|AK115333.1| Ciona intestinalis cDNA, clone:cieg045h06, full ... 44 0.44
21emb|AL683847.12| Mouse DNA sequence from clone RP23-109A3 on chr... 44 0.44
22ref|XM_630528.1| Dictyostelium discoideum hypothetical protein (... 42 1.8
23gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.8
24ref|XM_571334.1| Cryptococcus neoformans var. neoformans JEC21 p... 42 1.8
25ref|XM_733035.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 1.8
26ref|XM_777050.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.8
27gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Canc... 42 1.8
28gb|AC005917.3| Arabidopsis thaliana chromosome 2 clone F3P11 map... 42 1.8
29gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Canc... 42 1.8
30gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I... 42 1.8
31gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, compl... 42 1.8
32gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com... 40 6.9
33gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosom... 40 6.9
34gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3... 40 6.9
35emb|CR936412.13| Zebrafish DNA sequence from clone DKEY-181M21 i... 40 6.9
36gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complet... 40 6.9
37gb|AC122366.3| Mus musculus BAC clone RP23-447K15 from 14, compl... 40 6.9
38gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete s... 40 6.9
39gb|AC124214.8| Medicago truncatula clone mth2-36a23, complete se... 40 6.9
40emb|AL353621.19| Human DNA sequence from clone RP11-490D19 on ch... 40 6.9
41gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com... 40 6.9
42dbj|BS000678.1| Pan troglodytes chromosome Y clone: PTB-448K11, ... 40 6.9
43dbj|BS000682.1| Pan troglodytes chromosome Y clone: PTB-178C02, ... 40 6.9
44gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.9
45ref|NM_142283.2| Drosophila melanogaster CG17565-RA (CG17565), mRNA 40 6.9
46gb|AC161421.3| Mus musculus BAC clone RP24-424A8 from chromosome... 40 6.9
47gb|AC159024.2| Pan troglodytes BAC clone CH251-479P21 from chrom... 40 6.9
48gb|AY051869.1| Drosophila melanogaster LD36454 full length cDNA 40 6.9
49dbj|AK035180.1| Mus musculus 12 days embryo embryonic body betwe... 40 6.9
50gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, r... 40 6.9
51gb|AC154111.2| Pan troglodytes BAC clone CH251-110D7 from chromo... 40 6.9
52gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome... 40 6.9
53gb|AC154632.2| Mus musculus BAC clone RP23-292P17 from chromosom... 40 6.9
54gb|AC026355.13| Homo sapiens 3 BAC RP11-114M1 (Roswell Park Canc... 40 6.9
55emb|BX571834.6| Mouse DNA sequence from clone RP24-573J17 on chr... 40 6.9
56emb|AL928619.6| Zebrafish DNA sequence from clone CH211-63I20, c... 40 6.9
57gb|AC154406.2| Mus musculus BAC clone RP24-251M20 from 9, comple... 40 6.9
58gb|AC170923.3| Pan troglodytes BAC clone CH251-394N14 from chrom... 40 6.9
59gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51... 40 6.9
60emb|AL358335.4|CNS05TE6 Human chromosome 14 DNA sequence BAC R-2... 40 6.9
61emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 6.9
62gb|AC122318.4| Mus musculus BAC clone RP23-306H2 from 16, comple... 40 6.9
63emb|AL672128.8| Mouse DNA sequence from clone RP23-153G22 on chr... 40 6.9 
>dbj|AK073299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029E14, full
            insert sequence
          Length = 1596

 Score =  270 bits (136), Expect = 4e-69
 Identities = 205/228 (89%)
 Strand = Plus / Minus

                                                                        
Query: 285  tttgctggagtacgatggtttagattgttcagcaacaactgtcatcagcttttgtgctaa 344
            ||||||||| || |||| |||  |||| ||| ||||||||||||| || ||||||| |||
Sbjct: 1061 tttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaa 1002

                                                                        
Query: 345  agcaatagcagctccctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtcc 404
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1001 agcaagagcagctccctgccaaaaggagtagcaaccatcaaccaatttattagttcgtcc 942

                                                                        
Query: 405  ttggaatccacattccactccttgacgaaatgccacccagccaatcaagctaggcaaatc 464
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 941  ttgaaatccacattccactccttggcgaaatgccacccagccaatcaagctagccaaatc 882

                                                            
Query: 465  gagtttctccacttcattaagcaggaccattgcagccaggccacaaaa 512
             ||||| |||||||| |||||||||| ||| | |||||| ||||||||
Sbjct: 881  aagtttgtccacttcgttaagcaggatcatcgtagccagcccacaaaa 834
to top
>dbj|AK071486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095H23, full
            insert sequence
          Length = 2713

 Score =  270 bits (136), Expect = 4e-69
 Identities = 205/228 (89%)
 Strand = Plus / Minus

                                                                        
Query: 285  tttgctggagtacgatggtttagattgttcagcaacaactgtcatcagcttttgtgctaa 344
            ||||||||| || |||| |||  |||| ||| ||||||||||||| || ||||||| |||
Sbjct: 2178 tttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaa 2119

                                                                        
Query: 345  agcaatagcagctccctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtcc 404
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 2118 agcaagagcagctccctgccaaaaggagtagcaaccatcaaccaatttattagttcgtcc 2059

                                                                        
Query: 405  ttggaatccacattccactccttgacgaaatgccacccagccaatcaagctaggcaaatc 464
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 2058 ttgaaatccacattccactccttggcgaaatgccacccagccaatcaagctagccaaatc 1999

                                                            
Query: 465  gagtttctccacttcattaagcaggaccattgcagccaggccacaaaa 512
             ||||| |||||||| |||||||||| ||| | |||||| ||||||||
Sbjct: 1998 aagtttgtccacttcgttaagcaggatcatcgtagccagcccacaaaa 1951
to top
>gb|AY104288.1| Zea mays PCO074498 mRNA sequence
          Length = 1820

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Minus

                                                                       
Query: 333 cttttgtgctaaagcaatagcagctccctgccaaaaggagtagcaaccatcaaccaattt 392
           ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 cttttgtgtgaaagcaatggcagctccctgccaaaaggagtagcaaccatcaaccaattt 933

                                                                       
Query: 393 atttgtccgtccttggaatccacattccactccttgacgaaatgccacccagccaatcaa 452
           ||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 932 attagttcgtccttgaaatccgcattccactccttgacgaaaagccacccagccaatcaa 873

                                                 
Query: 453 gctaggcaaatcgagtttctccacttcattaagcagga 490
            |||||||| || | ||||||  | |||||||||||||
Sbjct: 872 actaggcaagtcaactttctctgcctcattaagcagga 835
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 6e-31
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                            
Query: 359      cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatccacatt 418
                ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 30769490 cctgccaaaaggagtagcaaccatcaaccaatttattagttcgtccttgaaatccacatt 30769549

                                            
Query: 419      ccactccttgacgaaatgccacccagcc 446
                |||||||||| |||||||||||||||||
Sbjct: 30769550 ccactccttggcgaaatgccacccagcc 30769577



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 446      caatcaagctaggcaaatcgagtttctccacttcattaagcaggaccattgcagccaggc 505
                |||||||||||| |||||| ||||| |||||||| |||||||||| ||| | |||||| |
Sbjct: 30769841 caatcaagctagccaaatcaagtttgtccacttcgttaagcaggatcatcgtagccagcc 30769900

                       
Query: 506      cacaaaa 512
                |||||||
Sbjct: 30769901 cacaaaa 30769907



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                            
Query: 285      tttgctggagtacgatggtttagattgttcagcaacaactgtcatcagcttttgtgctaa 344
                ||||||||| || |||| |||  |||| ||| ||||||||||||| || ||||||| |||
Sbjct: 30769344 tttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaa 30769403

                                  
Query: 345      agcaatagcagctccctg 362
                ||||| ||||||||||||
Sbjct: 30769404 agcaagagcagctccctg 30769421
to top
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0021A09
          Length = 127973

 Score =  143 bits (72), Expect = 6e-31
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                         
Query: 359   cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatccacatt 418
             ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 58765 cctgccaaaaggagtagcaaccatcaaccaatttattagttcgtccttgaaatccacatt 58824

                                         
Query: 419   ccactccttgacgaaatgccacccagcc 446
             |||||||||| |||||||||||||||||
Sbjct: 58825 ccactccttggcgaaatgccacccagcc 58852



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 446   caatcaagctaggcaaatcgagtttctccacttcattaagcaggaccattgcagccaggc 505
             |||||||||||| |||||| ||||| |||||||| |||||||||| ||| | |||||| |
Sbjct: 59116 caatcaagctagccaaatcaagtttgtccacttcgttaagcaggatcatcgtagccagcc 59175

                    
Query: 506   cacaaaa 512
             |||||||
Sbjct: 59176 cacaaaa 59182



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 285   tttgctggagtacgatggtttagattgttcagcaacaactgtcatcagcttttgtgctaa 344
             ||||||||| || |||| |||  |||| ||| ||||||||||||| || ||||||| |||
Sbjct: 58619 tttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaa 58678

                               
Query: 345   agcaatagcagctccctg 362
             ||||| ||||||||||||
Sbjct: 58679 agcaagagcagctccctg 58696
to top
>gb|U73203.1|NGU73203 Nicotiana glutinosa farnesyltransferase beta subunit mRNA, partial
           cds
          Length = 1449

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                       
Query: 359 cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatccacatt 418
           ||||||||||||| ||||| ||||| || |||||||||||||  ||||| ||||||| ||
Sbjct: 799 cctgccaaaaggaatagcagccatcgactaatttatttgtcctgccttgaaatccacctt 740

                                    
Query: 419 ccactccttgacgaaatgccaccca 443
           | |||||||| | |||| |||||||
Sbjct: 739 cgactccttgtctaaataccaccca 715
to top
>ref|NM_191123.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1620

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                        
Query: 446  caatcaagctaggcaaatcgagtttctccacttcattaagcaggaccattgcagccaggc 505
            |||||||||||| |||||| ||||| |||||||| |||||||||| ||| | |||||| |
Sbjct: 1087 caatcaagctagccaaatcaagtttgtccacttcgttaagcaggatcatcgtagccagcc 1028

                   
Query: 506  cacaaaa 512
            |||||||
Sbjct: 1027 cacaaaa 1021



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 285  tttgctggagtacgatggtttagattgttcagcaacaactgtcatcagcttttgtgctaa 344
            ||||||||| || |||| |||  |||| ||| ||||||||||||| || ||||||| |||
Sbjct: 1233 tttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaa 1174

                              
Query: 345  agcaatagcagctccctg 362
            ||||| ||||||||||||
Sbjct: 1173 agcaagagcagctccctg 1156
to top
>gb|U83708.1|LEU83708 Lycopersicon esculentum farnesyl protein transferase subunit B
           (LeFTB) mRNA, complete cds
          Length = 1832

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 358 ccctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatccacat 417
           |||||||||||||| ||||| ||||| || |||||||||||||  ||||| ||||||| |
Sbjct: 883 ccctgccaaaaggaatagcagccatcgactaatttatttgtcctgccttgaaatccacct 824

                                     
Query: 418 tccactccttgacgaaatgccaccca 443
           || || ||||| | |||| |||||||
Sbjct: 823 tcgaccccttgtctaaataccaccca 798
to top
>gb|U75644.1|U75644 Lycopersicon esculentum farnesyl-protein transferase beta subunit gene,
             complete cds
          Length = 13066

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                         
Query: 359   cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatccacatt 418
             ||||||||||||| ||||| ||||| || |||||||||||||  ||||| ||||||| ||
Sbjct: 10563 cctgccaaaaggaatagcagccatcgactaatttatttgtcctgccttgaaatccacctt 10504

                                      
Query: 419   ccactccttgacgaaatgccaccca 443
             | || ||||| | |||| |||||||
Sbjct: 10503 cgaccccttgtctaaataccaccca 10479
to top
>gb|AF389849.1| Catharanthus roseus farnesyltransferase beta subunit (FTB) mRNA,
           complete cds
          Length = 1855

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 355 gctccctgccaaaaggagtagcaaccatcaaccaatttatttgt 398
           ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 970 gctccctgccaaaaggaatagcacccgtcaaccaatttatttgt 927
to top
>gb|AY586550.1| Catharanthus roseus farnesyltransferase beta subunit (FTB) precursor
            RNA, complete cds
          Length = 1966

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 355  gctccctgccaaaaggagtagcaaccatcaaccaatttatttgt 398
            ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 1091 gctccctgccaaaaggaatagcacccgtcaaccaatttatttgt 1048
to top
>gb|L08664.1|PEABFARNES Pea farnesyltransferase beta-subunit mRNA, complete cds
          Length = 1648

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 346 gcaatagcagctccctgccaaaaggagtagcaaccatcaaccaatttatt 395
           |||| |||| ||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 842 gcaacagcacctccctgccaaaacgagtagcatccatctaccaatttatt 793
to top
>gb|AY162319.1| Cryptococcus neoformans var. neoformans protein-farnesyl transferase
            beta chain (RAM1) gene, complete cds
          Length = 4201

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 376  caaccatcaaccaatttatttgtccgtcc 404
            ||||| |||||||||||||||||||||||
Sbjct: 2462 caaccgtcaaccaatttatttgtccgtcc 2434
to top
>ref|NM_123392.1| Arabidopsis thaliana ERA1 (ENHANCED RESPONSE TO ABA 1); protein
           farnesyltransferase AT5G40280 (ERA1) mRNA, complete cds
          Length = 1627

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 359 cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
           |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 934 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 880
to top
>gb|AY099623.1| Arabidopsis thaliana beta subunit of protein farnesyl transferase
           ERA1 (At5g40280) mRNA, complete cds
          Length = 1567

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 359 cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
           |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 905 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 851
to top
>gb|AF214106.1|AF214106 Arabidopsis thaliana farnesyltransferase beta subunit (ERA1) mRNA,
           complete cds
          Length = 1627

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 359 cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
           |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 934 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 880
to top
>dbj|AB010699.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9
          Length = 61001

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 359   cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
             |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 56616 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 56562
to top
>gb|U46574.1|ATU46574 Arabidopsis thaliana protein farnesyl transferase beta subunit (ERA1)
            gene, partial cds
          Length = 3174

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 359  cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
            |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 2281 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 2227
to top
>gb|U44849.1|ATU44849 Arabidopsis thaliana beta subunit of protein farnesyl transferase
           mRNA, partial cds
          Length = 1331

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 359 cctgccaaaaggagtagcaaccatcaaccaatttatttgtccgtccttggaatcc 413
           |||||||||| | |||||||||||| |||||||| || ||||  ||||| |||||
Sbjct: 697 cctgccaaaatgtgtagcaaccatcgaccaatttgttcgtcctaccttgaaatcc 643
to top
>dbj|AK115333.1| Ciona intestinalis cDNA, clone:cieg045h06, full insert sequence
          Length = 1552

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 356 ctccctgccaaaaggagtagcaaccatcaaccaatttatttgtccg 401
           |||| |||||||| || || || |||||||||| ||||||||||||
Sbjct: 929 ctccttgccaaaatgaataacatccatcaaccagtttatttgtccg 884
to top
>emb|AL683847.12| Mouse DNA sequence from clone RP23-109A3 on chromosome 4, complete
              sequence
          Length = 212973

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 250    gagctggtcccacaagcatcat 271
              ||||||||||||||||||||||
Sbjct: 169821 gagctggtcccacaagcatcat 169842
to top
>ref|XM_630528.1| Dictyostelium discoideum hypothetical protein (DDB0216167), partial
             mRNA
          Length = 16953

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   gatggtttagattgttcagca 318
             |||||||||||||||||||||
Sbjct: 12295 gatggtttagattgttcagca 12315
to top
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 376    caaccatcaaccaatttatttgtccgtcc 404
              ||||| ||||||||||| |||||||||||
Sbjct: 689846 caaccgtcaaccaatttgtttgtccgtcc 689818
to top
>ref|XM_571334.1| Cryptococcus neoformans var. neoformans JEC21 protein
            farnesyltransferase (CNF02370) partial mRNA
          Length = 1652

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 376  caaccatcaaccaatttatttgtccgtcc 404
            ||||| ||||||||||| |||||||||||
Sbjct: 1026 caaccgtcaaccaatttgtttgtccgtcc 998
to top
>ref|XM_733035.1| Plasmodium chabaudi chabaudi hypothetical protein (PC401759.00.0)
           partial mRNA
          Length = 87

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 tgttactaataataaagaaaa 163
           |||||||||||||||||||||
Sbjct: 63  tgttactaataataaagaaaa 83
to top
>ref|XM_777050.1| PREDICTED: Strongylocentrotus purpuratus similar to
           farnesyltransferase, CAAX box, beta (LOC576777), partial
           mRNA
          Length = 780

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 359 cctgccaaaaggagtagcaaccatc 383
           ||||||| |||||||||||||||||
Sbjct: 406 cctgccagaaggagtagcaaccatc 382
to top
>gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199853

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 136   agaaatatgttactaataataaaga 160
             |||||||| ||||||||||||||||
Sbjct: 21011 agaaatattttactaataataaaga 21035
to top
>gb|AC005917.3| Arabidopsis thaliana chromosome 2 clone F3P11 map CIC06E08, complete
             sequence
          Length = 92822

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 334   ttttgtgctaaagcaatagcagctc 358
             |||||||||||||||| ||||||||
Sbjct: 91237 ttttgtgctaaagcaagagcagctc 91213
to top
>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 183526

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 136    agaaatatgttactaataataaaga 160
              |||||||| ||||||||||||||||
Sbjct: 107168 agaaatattttactaataataaaga 107144
to top
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
             sequence
          Length = 132990

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   taataataaagaaaagcacat 169
             |||||||||||||||||||||
Sbjct: 27915 taataataaagaaaagcacat 27895
to top
>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence
          Length = 178210

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 136    agaaatatgttactaataataaaga 160
              |||||||| ||||||||||||||||
Sbjct: 167538 agaaatattttactaataataaaga 167562
to top
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence
          Length = 168316

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   taataataaagaaaagcaca 168
             ||||||||||||||||||||
Sbjct: 35982 taataataaagaaaagcaca 36001
to top
>gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosome 14, complete
             sequence
          Length = 186860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     caaaagagaaagtttatctttctt 25
             ||||||||||||||||| ||||||
Sbjct: 17330 caaaagagaaagtttatgtttctt 17353
to top
>gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete
              sequence
          Length = 250195

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 138    aaatatgttactaataataaagaa 161
              |||| |||||||||||||||||||
Sbjct: 225082 aaatttgttactaataataaagaa 225059
to top
>emb|CR936412.13| Zebrafish DNA sequence from clone DKEY-181M21 in linkage group 18,
            complete sequence
          Length = 151872

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  aattatttcaccagatattt 130
            ||||||||||||||||||||
Sbjct: 5890 aattatttcaccagatattt 5909
to top
>gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complete sequence
          Length = 224941

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aatgtacatataacagggaa 98
              ||||||||||||||||||||
Sbjct: 210152 aatgtacatataacagggaa 210171
to top
>gb|AC122366.3| Mus musculus BAC clone RP23-447K15 from 14, complete sequence
          Length = 175591

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     aatgtacatataacagggaa 98
              ||||||||||||||||||||
Sbjct: 133061 aatgtacatataacagggaa 133042
to top
>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence
          Length = 146810

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   attggtctcacaagataatt 187
             ||||||||||||||||||||
Sbjct: 82401 attggtctcacaagataatt 82382
to top
>gb|AC124214.8| Medicago truncatula clone mth2-36a23, complete sequence
          Length = 118803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    caaaagagaaagtttatctt 21
            ||||||||||||||||||||
Sbjct: 8579 caaaagagaaagtttatctt 8598
to top
>emb|AL353621.19| Human DNA sequence from clone RP11-490D19 on chromosome 9 Contains a
             novel pseudogene, the MRPL50 gene for mitochondrial
             ribosomal protein L50, the ZNF189 gene for zinc finger
             protein 189, the ALDOB gene for aldolase B,
             fructose-bisphosphate, a NADH dehydrogenase (ubiquinone) 1
             alpha subcomplex (NDUFA4) pseudogene, three novel genes,
             the 5' end of the RNF20 gene for ring finger protein 20
             and three CpG islands, complete sequence
          Length = 164115

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     aaaagagaaagtttatctttcttc 26
             |||||| |||||||||||||||||
Sbjct: 79171 aaaagataaagtttatctttcttc 79194
to top
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence
          Length = 167209

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    taataataaagaaaagcaca 168
              ||||||||||||||||||||
Sbjct: 105352 taataataaagaaaagcaca 105333
to top
>dbj|BS000678.1| Pan troglodytes chromosome Y clone: PTB-448K11, complete sequence
          Length = 195684

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    ttataaagtcagcaaacaagagat 63
             |||||||||||| |||||||||||
Sbjct: 97824 ttataaagtcaggaaacaagagat 97847
to top
>dbj|BS000682.1| Pan troglodytes chromosome Y clone: PTB-178C02, complete sequence
          Length = 222422

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    ttataaagtcagcaaacaagagat 63
             |||||||||||| |||||||||||
Sbjct: 99752 ttataaagtcaggaaacaagagat 99775
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 40       ttataaagtcagcaaacaagagat 63
                |||||||||||| |||||||||||
Sbjct: 12749194 ttataaagtcaggaaacaagagat 12749171



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 40      ttataaagtcagcaaacaagagat 63
               |||||||||||| |||||||||||
Sbjct: 5149402 ttataaagtcaggaaacaagagat 5149425



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 40      ttataaagtcagcaaacaagagat 63
               |||||||||||| |||||||||||
Sbjct: 1494208 ttataaagtcaggaaacaagagat 1494231
to top
>ref|NM_142283.2| Drosophila melanogaster CG17565-RA (CG17565), mRNA
          Length = 1594

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 367 aaggagtagcaaccatcaaccaatttatttgtccgtccttggaa 410
           ||||||||||| |||||||||| ||| || ||||  ||||||||
Sbjct: 977 aaggagtagcagccatcaaccagtttgttggtcctcccttggaa 934
to top
>gb|AC161421.3| Mus musculus BAC clone RP24-424A8 from chromosome 9, complete sequence
          Length = 167449

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    aactgtcatcagcttttgtg 340
              ||||||||||||||||||||
Sbjct: 147415 aactgtcatcagcttttgtg 147434
to top
>gb|AC159024.2| Pan troglodytes BAC clone CH251-479P21 from chromosome y, complete
              sequence
          Length = 186141

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     ttataaagtcagcaaacaagagat 63
              |||||||||||| |||||||||||
Sbjct: 117020 ttataaagtcaggaaacaagagat 116997
to top
>gb|AY051869.1| Drosophila melanogaster LD36454 full length cDNA
          Length = 1588

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 367 aaggagtagcaaccatcaaccaatttatttgtccgtccttggaa 410
           ||||||||||| |||||||||| ||| || ||||  ||||||||
Sbjct: 957 aaggagtagcagccatcaaccagtttgttggtcctcccttggaa 914
to top
>dbj|AK035180.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430096N03 product:unclassifiable, full insert
            sequence
          Length = 1805

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  aactgtcatcagcttttgtg 340
            ||||||||||||||||||||
Sbjct: 1399 aactgtcatcagcttttgtg 1380
to top
>gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, region 89D-89D, BAC clone
             BACR01H23, complete sequence
          Length = 199653

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 367   aaggagtagcaaccatcaaccaatttatttgtccgtccttggaa 410
             ||||||||||| |||||||||| ||| || ||||  ||||||||
Sbjct: 93755 aaggagtagcagccatcaaccagtttgttggtcctcccttggaa 93712
to top
>gb|AC154111.2| Pan troglodytes BAC clone CH251-110D7 from chromosome y, complete
             sequence
          Length = 185601

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    ttataaagtcagcaaacaagagat 63
             |||||||||||| |||||||||||
Sbjct: 77865 ttataaagtcaggaaacaagagat 77842
to top
>gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome 14, complete sequence
          Length = 220498

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     caaaagagaaagtttatctttctt 25
             ||||||||||||||||| ||||||
Sbjct: 11043 caaaagagaaagtttatgtttctt 11020
to top
>gb|AC154632.2| Mus musculus BAC clone RP23-292P17 from chromosome 16, complete sequence
          Length = 165860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     gcatggtatttaatgtacatataa 91
              ||||||||||||||||| ||||||
Sbjct: 156912 gcatggtatttaatgtatatataa 156889
to top
>gb|AC026355.13| Homo sapiens 3 BAC RP11-114M1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 157439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    atagttaccaataggagatttttc 233
              |||||| |||||||||||||||||
Sbjct: 140868 atagtttccaataggagatttttc 140891
to top
>emb|BX571834.6| Mouse DNA sequence from clone RP24-573J17 on chromosome X, complete
              sequence
          Length = 149913

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     tcagcaaacaagagatataagcat 71
              |||||| |||||||||||||||||
Sbjct: 124101 tcagcagacaagagatataagcat 124124
to top
>emb|AL928619.6| Zebrafish DNA sequence from clone CH211-63I20, complete sequence
          Length = 158847

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 64   ataagcatggtatttaatgtacatataa 91
            |||| |||| ||||||||||||||||||
Sbjct: 1469 ataaacatgttatttaatgtacatataa 1496
to top
>gb|AC154406.2| Mus musculus BAC clone RP24-251M20 from 9, complete sequence
          Length = 169877

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   aactgtcatcagcttttgtg 340
             ||||||||||||||||||||
Sbjct: 59998 aactgtcatcagcttttgtg 60017
to top
>gb|AC170923.3| Pan troglodytes BAC clone CH251-394N14 from chromosome y, complete
             sequence
          Length = 176129

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    ttataaagtcagcaaacaagagat 63
             |||||||||||| |||||||||||
Sbjct: 18950 ttataaagtcaggaaacaagagat 18927
to top
>gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51 of 118 of the
             complete sequence
          Length = 226561

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 367   aaggagtagcaaccatcaaccaatttatttgtccgtccttggaa 410
             ||||||||||| |||||||||| ||| || ||||  ||||||||
Sbjct: 91923 aaggagtagcagccatcaaccagtttgttggtcctcccttggaa 91880
to top
>emb|AL358335.4|CNS05TE6 Human chromosome 14 DNA sequence BAC R-2G1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171072

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aaaagagaaagtttatcttt 22
             ||||||||||||||||||||
Sbjct: 52943 aaaagagaaagtttatcttt 52924
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   tcaaccaatttatttgtccg 401
             ||||||||||||||||||||
Sbjct: 76111 tcaaccaatttatttgtccg 76092
to top
>gb|AC122318.4| Mus musculus BAC clone RP23-306H2 from 16, complete sequence
          Length = 207909

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    gcatggtatttaatgtacatataa 91
             ||||||||||||||||| ||||||
Sbjct: 14265 gcatggtatttaatgtatatataa 14242
to top
>emb|AL672128.8| Mouse DNA sequence from clone RP23-153G22 on chromosome X, complete
             sequence
          Length = 213937

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   attggtctcacaagataatt 187
             ||||||||||||||||||||
Sbjct: 85958 attggtctcacaagataatt 85939


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,937,748
Number of Sequences: 3902068
Number of extensions: 5937748
Number of successful extensions: 119475
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119184
Number of HSP's gapped (non-prelim): 291
length of query: 512
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 489
effective length of database: 17,143,297,704
effective search space: 8383072577256
effective search space used: 8383072577256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top