>TRUB_LEGPA (Q5X1C5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEACIPKLKTSIRH 159
           T    NN+   L+ +QD+ L Q  AC+  +  +I+H
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAIQH 240

>TRUB_LEGPL (Q5WT38) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEACIPKLKTSIRH 159
           T    NN+   L+ +QD+ L Q  AC+  +  +++H
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQH 240

>TRUB_LEGPH (Q5ZRV6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEACIPKLKTSIRH 159
           T    NN+   L+ +QD+ L Q  AC+  +  +++H
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQH 240

>CD017_HUMAN (Q53FE4) Protein C4orf17|
          Length = 359

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 22  SRHNAPQ*TNTQSARNNKQINLNNIQDLTLDQTEACIP 135
           S+ N+P   NTQ + + K ++  +IQ+  L    AC P
Sbjct: 317 SKPNSPPRPNTQESGSAKPVSARSIQEYNLCPQRACYP 354

>GRIK1_RAT (P22756) Glutamate receptor, ionotropic kainate 1 precursor|
           (Glutamate receptor 5) (GluR-5) (GluR5)
          Length = 949

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 131 IQASVWSRVRSWMLFKFICLLL 66
           IQ  +W+R  SW L  F+C +L
Sbjct: 8   IQPGLWTRDTSWTLLYFLCYIL 29

>GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 precursor|
           (Glutamate receptor 5) (GluR-5) (GluR5)
          Length = 836

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 131 IQASVWSRVRSWMLFKFICLLL 66
           IQ  +W+R  SW L  F+C +L
Sbjct: 8   IQPGLWTRDTSWTLLYFLCYIL 29


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,187,040
Number of Sequences: 219361
Number of extensions: 391110
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)