ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 272 3e-70
2gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 121 7e-25
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 107 1e-20
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 105 4e-20
5gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 92 6e-16
6emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 90 2e-15
7emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.008
8emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 44 0.13
9emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 44 0.13
10gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 2.0
11ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 2.0
12gb|DQ123968.1| Coffea arabica x Coffea canephora clone HT-SSH1-D... 40 2.0
13dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 2.0
14dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 2.0
15gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 2.0
16dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 2.0
17dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 2.0
18gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O1... 38 7.8
19gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 ... 38 7.8
20gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 38 7.8
21gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co... 38 7.8
22ref|NM_058166.3| Homo sapiens tripartite motif-containing 6 (TRI... 38 7.8
23ref|NM_001003818.1| Homo sapiens tripartite motif-containing 6 (... 38 7.8
24gb|AC107803.15| Mus musculus chromosome 9, clone RP23-47I9, comp... 38 7.8
25gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome... 38 7.8
26gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome... 38 7.8
27gb|BC065575.1| Homo sapiens tripartite motif-containing 6, mRNA ... 38 7.8
28gb|AC092989.6| Homo sapiens 3 BAC RP11-237P21 (Roswell Park Canc... 38 7.8
29gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, comple... 38 7.8
30gb|DQ366035.1| Clostridium perfringens strain CW92 plasmid pCW3,... 38 7.8
31emb|AL445186.4| Human DNA sequence from clone RP11-336P12 on chr... 38 7.8
32gb|AC112496.2| Homo sapiens X BAC RP11-242C19 (Roswell Park Canc... 38 7.8
33emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 38 7.8
34gb|BC047564.1| Homo sapiens tripartite motif-containing 6, trans... 38 7.8
35emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 38 7.8
36emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 38 7.8
37gb|AC139132.8| Mus musculus chromosome 3, clone RP23-411C10, com... 38 7.8
38emb|CR857229.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1621 (from cl... 38 7.8
39gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, compl... 38 7.8
40gb|DQ419508.1| Uncultured phototrophic eukaryote clone ST15-90R ... 38 7.8
41dbj|AB236337.1| Clostridium perfringens F5603 plasmid pCPF5603 D... 38 7.8
42dbj|AB236336.1| Clostridium perfringens F4969 plasmid pCPF4969 D... 38 7.8
43emb|CR749260.1| Homo sapiens mRNA; cDNA DKFZp781D1977 (from clon... 38 7.8
44gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, comp... 38 7.8
45dbj|AK023210.1| Homo sapiens cDNA FLJ13148 fis, clone NT2RP30033... 38 7.8
46gb|AC109341.7| Homo sapiens chromosome 11, clone CTD-2504M7, com... 38 7.8
47gb|AC015691.6| Homo sapiens chromosome , clone RP11-54F1, comple... 38 7.8
48gb|AC008880.6| Homo sapiens chromosome 5 clone CTD-2210P10, comp... 38 7.8
49gb|AC016613.7| Homo sapiens chromosome 5 clone CTD-2207L2, compl... 38 7.8
50gb|AF220030.1|AF220030 Homo sapiens tripartite motif protein TRI... 38 7.8
51dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
52emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in ... 38 7.8
53dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
54emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 ... 38 7.8
55dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 38 7.8
56gb|AF139182.1|AF139182 Bartonella henselae filamentous hemagglut... 38 7.8
57emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in... 38 7.8
58emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in... 38 7.8
59emb|AL928936.9| Zebrafish DNA sequence from clone CH211-133H2 in... 38 7.8
60emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 ... 38 7.8
61emb|AL954347.10| Mouse DNA sequence from clone RP23-438I5 on chr... 38 7.8
62dbj|AP006354.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 7.8 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  272 bits (137), Expect = 3e-70
 Identities = 152/157 (96%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggcggaaatctttaatatcaaggcataatgccccccaataaaccaatacacaaagtgccc 64
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 65   gcaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                 
Query: 125  cctgtatacccaaactgaaaacaagcatccgtcacct 161
            || |||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacct 998
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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  121 bits (61), Expect = 7e-25
 Identities = 107/120 (89%), Gaps = 8/120 (6%)
 Strand = Plus / Minus

                                                                        
Query: 4    gggcggaaatctttaatatcaaggcataatgccccccaataaaccaatacacaaagtgcc 63
            ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct: 1111 gggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgcc 1053

                                                                        
Query: 64   cgcaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |      ||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1052 c------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1000
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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  107 bits (54), Expect = 1e-20
 Identities = 103/116 (88%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgccccccaataaaccaatacacaaagtgcccgca 67
            ||||||||||||||||||||||||||||||  |||  ||||||||||||| | ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacacaa-gcgccc--- 1083

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1028



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                       
Query: 134  ccaaactgaaa-acaagcatccgtcac 159
            ||||||||||| |||||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcac 1011
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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  105 bits (53), Expect = 4e-20
 Identities = 102/116 (87%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgccccccaataaaccaatacacaaagtgcccgca 67
            ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029
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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score = 91.7 bits (46), Expect = 6e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 4    gggcggaaatctttaatatcaaggcataatgccccccaataaaccaatacacaa 57
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 1142 gggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089
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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 94/107 (87%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 17   taatatcaaggcataatgccccccaataaaccaatacacaaagtgcccgcaataataagc 76
            |||||||||||||||||||||  |||  ||||||||||||| | ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagt 1072

                                                           
Query: 77   aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                       
Query: 134  ccaaactgaaa-acaagcatccgtcac 159
            ||||||||||| |||||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcac 1009
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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 103    ctgactctggaccaaactgaagcc 126
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 39     ccaataaaccaatacacaaagt 60
              ||||||||||||||||||||||
Sbjct: 156592 ccaataaaccaatacacaaagt 156571
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 39    ccaataaaccaatacacaaagt 60
             ||||||||||||||||||||||
Sbjct: 34761 ccaataaaccaatacacaaagt 34782
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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaataaacttaaacaacatc 96
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
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>gb|DQ123968.1| Coffea arabica x Coffea canephora clone HT-SSH1-D10 mRNA sequence
          Length = 515

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 cccaaactgaaaacaagcat 152
           ||||||||||||||||||||
Sbjct: 108 cccaaactgaaaacaagcat 127
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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 97   caggacctgactctggaccaaactgaag 124
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    caggacctgactctggaccaaactgaag 124
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778
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>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence
          Length = 161249

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 73     aagcaaataaacttaaacaacat 95
              |||||||| ||||||||||||||
Sbjct: 115287 aagcaaatgaacttaaacaacat 115309
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>gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155
             gene, complete sequence
          Length = 165617

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    caataaaccaatacacaaa 58
             |||||||||||||||||||
Sbjct: 24811 caataaaccaatacacaaa 24829
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 73     aagcaaataaacttaaacaacat 95
              |||||||| ||||||||||||||
Sbjct: 254007 aagcaaatgaacttaaacaacat 254029
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>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     gcaataataagcaaataaa 83
              |||||||||||||||||||
Sbjct: 154490 gcaataataagcaaataaa 154508
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>ref|NM_058166.3| Homo sapiens tripartite motif-containing 6 (TRIM6), transcript
            variant 2, mRNA
          Length = 3215

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2489 gcaataataagcaaataaa 2507
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>ref|NM_001003818.1| Homo sapiens tripartite motif-containing 6 (TRIM6), transcript
            variant 1, mRNA
          Length = 3409

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2683 gcaataataagcaaataaa 2701
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>gb|AC107803.15| Mus musculus chromosome 9, clone RP23-47I9, complete sequence
          Length = 198199

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     tttaatatcaaggcataat 33
              |||||||||||||||||||
Sbjct: 137546 tttaatatcaaggcataat 137564
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>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete sequence
          Length = 212090

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     gcaataataagcaaataaa 83
              |||||||||||||||||||
Sbjct: 175755 gcaataataagcaaataaa 175773
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>gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome 15, complete sequence
          Length = 175584

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    gcaataataagcaaataaa 83
             |||||||||||||||||||
Sbjct: 25224 gcaataataagcaaataaa 25242
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>gb|BC065575.1| Homo sapiens tripartite motif-containing 6, mRNA (cDNA clone
            MGC:61844 IMAGE:4609084), complete cds
          Length = 2975

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2230 gcaataataagcaaataaa 2248
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>gb|AC092989.6| Homo sapiens 3 BAC RP11-237P21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168492

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     aataataagcaaataaact 85
              |||||||||||||||||||
Sbjct: 137617 aataataagcaaataaact 137635
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>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence
          Length = 203804

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     gcaataataagcaaataaa 83
              |||||||||||||||||||
Sbjct: 168899 gcaataataagcaaataaa 168881
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>gb|DQ366035.1| Clostridium perfringens strain CW92 plasmid pCW3, complete sequence
          Length = 47263

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 37036 aagcaaataaacttaaaca 37018
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>emb|AL445186.4| Human DNA sequence from clone RP11-336P12 on chromosome 9 Contains the 3'
              end of the PBX3 gene for pre-B-cell leukemia transcription
              factor 3, complete sequence
          Length = 156124

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     aatctttaatatcaaggca 29
              |||||||||||||||||||
Sbjct: 100512 aatctttaatatcaaggca 100494
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>gb|AC112496.2| Homo sapiens X BAC RP11-242C19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166765

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tacccaaactgaaaacaag 149
             |||||||||||||||||||
Sbjct: 16490 tacccaaactgaaaacaag 16508
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     aggcataatgccccccaat 43
              |||||||||||||||||||
Sbjct: 900845 aggcataatgccccccaat 900827



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     aggcataatgccccccaat 43
              |||||||||||||||||||
Sbjct: 824626 aggcataatgccccccaat 824608
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>gb|BC047564.1| Homo sapiens tripartite motif-containing 6, transcript variant 1,
            mRNA (cDNA clone MGC:48281 IMAGE:4825118), complete cds
          Length = 3468

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2683 gcaataataagcaaataaa 2701
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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 67    aataataagcaaataaacttaaa 89
             ||||||||| |||||||||||||
Sbjct: 63645 aataataagtaaataaacttaaa 63623
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 67    aataataagcaaataaacttaaa 89
             ||||||||| |||||||||||||
Sbjct: 81134 aataataagtaaataaacttaaa 81112
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>gb|AC139132.8| Mus musculus chromosome 3, clone RP23-411C10, complete sequence
          Length = 187661

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 134   ccaaactgaaaacaagcat 152
             |||||||||||||||||||
Sbjct: 40142 ccaaactgaaaacaagcat 40124
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>emb|CR857229.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1621 (from clone DKFZp469D1621)
          Length = 2787

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2591 gcaataataagcaaataaa 2609
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>gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, complete sequence
          Length = 177782

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     caataaaccaatacacaaa 58
              |||||||||||||||||||
Sbjct: 115865 caataaaccaatacacaaa 115883
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>gb|DQ419508.1| Uncultured phototrophic eukaryote clone ST15-90R 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 483

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  aataataagcaaataaact 85
           |||||||||||||||||||
Sbjct: 97  aataataagcaaataaact 115
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>dbj|AB236337.1| Clostridium perfringens F5603 plasmid pCPF5603 DNA, complete sequence
          Length = 75268

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 65232 aagcaaataaacttaaaca 65250
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>dbj|AB236336.1| Clostridium perfringens F4969 plasmid pCPF4969 DNA, complete sequence
          Length = 70480

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 27126 aagcaaataaacttaaaca 27108
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>emb|CR749260.1| Homo sapiens mRNA; cDNA DKFZp781D1977 (from clone DKFZp781D1977)
          Length = 2594

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2400 gcaataataagcaaataaa 2418
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>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence
          Length = 189224

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 131    tacccaaactgaaaacaag 149
              |||||||||||||||||||
Sbjct: 106105 tacccaaactgaaaacaag 106123
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>dbj|AK023210.1| Homo sapiens cDNA FLJ13148 fis, clone NT2RP3003327, weakly similar to
            52 KD RO PROTEIN
          Length = 2482

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 1756 gcaataataagcaaataaa 1774
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>gb|AC109341.7| Homo sapiens chromosome 11, clone CTD-2504M7, complete sequence
          Length = 202761

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     gcaataataagcaaataaa 83
              |||||||||||||||||||
Sbjct: 182319 gcaataataagcaaataaa 182301
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>gb|AC015691.6| Homo sapiens chromosome , clone RP11-54F1, complete sequence
          Length = 203036

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    gcaataataagcaaataaa 83
             |||||||||||||||||||
Sbjct: 53717 gcaataataagcaaataaa 53699
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>gb|AC008880.6| Homo sapiens chromosome 5 clone CTD-2210P10, complete sequence
          Length = 105975

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    caataaaccaatacacaaa 58
             |||||||||||||||||||
Sbjct: 48208 caataaaccaatacacaaa 48226
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>gb|AC016613.7| Homo sapiens chromosome 5 clone CTD-2207L2, complete sequence
          Length = 121131

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     caataaaccaatacacaaa 58
              |||||||||||||||||||
Sbjct: 107510 caataaaccaatacacaaa 107492
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>gb|AF220030.1|AF220030 Homo sapiens tripartite motif protein TRIM6 (TRIM6) mRNA, complete
            cds
          Length = 3243

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   gcaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 2493 gcaataataagcaaataaa 2511
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 133    cccaaactgaaaacaagca 151
              |||||||||||||||||||
Sbjct: 353010 cccaaactgaaaacaagca 352992
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>emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in linkage group 4, complete
              sequence
          Length = 211817

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 70     aataagcaaataaacttaaacaa 92
              ||||| |||||||||||||||||
Sbjct: 136049 aataaacaaataaacttaaacaa 136071
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>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0414D03
          Length = 169823

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 133    cccaaactgaaaacaagca 151
              |||||||||||||||||||
Sbjct: 101609 cccaaactgaaaacaagca 101591
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>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8,
              complete sequence
          Length = 234864

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     caaataaacttaaacaaca 94
              |||||||||||||||||||
Sbjct: 132686 caaataaacttaaacaaca 132704
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 66    caataataagcaaataaacttaa 88
             ||||||||| |||||||||||||
Sbjct: 53894 caataataatcaaataaacttaa 53916
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>gb|AF139182.1|AF139182 Bartonella henselae filamentous hemagglutinin precursor (fhaA) and
           filamentous hemagglutinin precursor (fhaB) genes,
           complete cds
          Length = 3127

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  aggcataatgccccccaat 43
           |||||||||||||||||||
Sbjct: 526 aggcataatgccccccaat 508
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>emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in linkage group 4,
             complete sequence
          Length = 115188

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    caataaaccaatacacaaagtgc 62
             ||||||| |||||||||||||||
Sbjct: 74986 caataaatcaatacacaaagtgc 74964
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>emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in linkage group 4,
             complete sequence
          Length = 228177

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 70    aataagcaaataaacttaaacaa 92
             ||||| |||||||||||||||||
Sbjct: 75717 aataaacaaataaacttaaacaa 75695
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>emb|AL928936.9| Zebrafish DNA sequence from clone CH211-133H2 in linkage group 4,
              complete sequence
          Length = 157706

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 40     caataaaccaatacacaaagtgc 62
              ||||||| |||||||||||||||
Sbjct: 108857 caataaatcaatacacaaagtgc 108835
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>emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 in linkage group 6,
             complete sequence
          Length = 187638

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    caaataaacttaaacaaca 94
             |||||||||||||||||||
Sbjct: 88821 caaataaacttaaacaaca 88839
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>emb|AL954347.10| Mouse DNA sequence from clone RP23-438I5 on chromosome 2, complete
             sequence
          Length = 123289

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aatctttaatatcaaggca 29
             |||||||||||||||||||
Sbjct: 87970 aatctttaatatcaaggca 87988
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>dbj|AP006354.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16F22, TM0349b,
             complete sequence
          Length = 74471

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    caaataaacttaaacaaca 94
             |||||||||||||||||||
Sbjct: 47491 caaataaacttaaacaaca 47509


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,650,452
Number of Sequences: 3902068
Number of extensions: 1650452
Number of successful extensions: 128277
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128054
Number of HSP's gapped (non-prelim): 222
length of query: 161
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 139
effective length of database: 17,147,199,772
effective search space: 2383460768308
effective search space used: 2383460768308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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