ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y14200.1|HVY14200 Hordeum vulgare mRNA for 14-3-3 protein (H... 151 4e-34
2emb|BX324119.5| Zebrafish DNA sequence from clone DKEYP-114G10 i... 38 3.7
3gb|AF328831.1|AF328831 Colubrina asiatica 18S ribosomal RNA gene... 38 3.7
4emb|BX465197.8| Zebrafish DNA sequence from clone DKEY-184E24 in... 38 3.7
5ref|XM_573855.1| PREDICTED: Rattus norvegicus similar to chromos... 38 3.7
6emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in... 38 3.7

>emb|Y14200.1|HVY14200 Hordeum vulgare mRNA for 14-3-3 protein (Hv1433c)
          Length = 1155

 Score =  151 bits (76), Expect = 4e-34
 Identities = 79/80 (98%)
 Strand = Plus / Minus

                                                                        
Query: 8    ccgcctacaggcagcgaccacaaccttccccggaaacatcacatacggggagccccaaat 67
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1041 ccgcctacaggcagcgaccacaaccttccccggcaacatcacatacggggagccccaaat 982

                                
Query: 68   cttgcaacaacaaccataac 87
            ||||||||||||||||||||
Sbjct: 981  cttgcaacaacaaccataac 962



to top

>emb|BX324119.5| Zebrafish DNA sequence from clone DKEYP-114G10 in linkage group 7,
            complete sequence
          Length = 60037

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 66   atcttgcaacaacaaccat 84
            |||||||||||||||||||
Sbjct: 1286 atcttgcaacaacaaccat 1304



to top

>gb|AF328831.1|AF328831 Colubrina asiatica 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1 and 5.8S ribosomal RNA
           gene, complete sequence; and internal transcribed spacer
           2, partial sequence
          Length = 749

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  ggaaacatcacatacgggg 57
           |||||||||||||||||||
Sbjct: 145 ggaaacatcacatacgggg 163



to top

>emb|BX465197.8| Zebrafish DNA sequence from clone DKEY-184E24 in linkage group 14,
             complete sequence
          Length = 101530

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    atcttgcaacaacaaccat 84
             |||||||||||||||||||
Sbjct: 66824 atcttgcaacaacaaccat 66806



to top

>ref|XM_573855.1| PREDICTED: Rattus norvegicus similar to chromosome 10 open reading
            frame 71 (LOC498579), mRNA
          Length = 4134

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   aaccttccccggaaacatc 47
            |||||||||||||||||||
Sbjct: 1924 aaccttccccggaaacatc 1942



to top

>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14,
             complete sequence
          Length = 160087

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    atcttgcaacaacaaccat 84
             |||||||||||||||||||
Sbjct: 22463 atcttgcaacaacaaccat 22481


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 577,458
Number of Sequences: 3902068
Number of extensions: 577458
Number of successful extensions: 35361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35355
Number of HSP's gapped (non-prelim): 6
length of query: 87
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 66
effective length of database: 17,151,101,840
effective search space: 1131972721440
effective search space used: 1131972721440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top