>COFG_METTH (O27266) FO synthase subunit 1 (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
           subunit 1)
          Length = 359

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -1

Query: 330 EAPGRMGAIYTDVFVHGVDRTVEDRFSKAFLCDAYLAEQVGRIRHFVIPSHREKPGTP 157
           E  GR+   +T   + G+  T+E+R +++ L    + ++ G I+  +I + R KPG P
Sbjct: 184 EDAGRLRIPFTTGLLIGIGETIEER-AESLLELRRIQDRYGHIQEIIIQNFRSKPGIP 240

>RL172_HORVU (P35267) 60S ribosomal protein L17-2|
          Length = 172

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 250 QGVPLRRVPRRAGRPDQALRNPQPQGEARHALLPSQLVIFFIIHCSTYVHQAYLKTQHIY 71
           Q +P RR  R  GR  Q ++N QP G+ R     +Q V+  + +  +      L   ++Y
Sbjct: 56  QAIPFRRYCRGVGRTAQ-VKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLY 114

Query: 70  I 68
           I
Sbjct: 115 I 115

>CSD1_MYCLE (O32975) Probable cysteine desulfurase 1 (EC 2.8.1.7)|
          Length = 611

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 21/80 (26%), Positives = 32/80 (40%)
 Frame = -1

Query: 396 PAAFHEVEWDLVMVDAPTGWTPEAPGRMGAIYTDVFVHGVDRTVEDRFSKAFLCDAYLAE 217
           PA   ++    V V APT   PE   ++  +++   V           +   + D YL  
Sbjct: 51  PAPVAQIGVADVYVPAPTSPEPEGLPQVAPVFSRGNVPDTTAVPAAAGTTVGVADPYLPP 110

Query: 216 QVGRIRHFVIPSHREKPGTP 157
            VG +  F +PSH   P  P
Sbjct: 111 GVGHLSGFAVPSHGIVPTVP 130

>DP2L_PYRFU (P81409) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II) (DP2)|
          Length = 1263

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 190  YEVPDPADLLGEVRVAEERLGEPVLHRPVHAVHE 291
            YE+  P +L+G +   E+RLG+P ++  +   H+
Sbjct: 1020 YELKSPKELVGVIERVEDRLGKPEMYYGIKFTHD 1053

>ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-like factor 4)|
           (Myeloid Elf-1-like factor)
          Length = 655

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 164 PGFSLWLGITKCLIRPTCSARYASQRNALENLSSTVRSTPC-TNTSV*MAPILPGAS 331
           P  SL LG++     PT S   AS   +   L+ TV S+P  +N  + +AP+ PG++
Sbjct: 359 PSASLELGLSVDEEVPTTSTMLASPLQSQARLTKTVSSSPAPSNIHLGVAPVGPGST 415

>DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
            [Contains: Pho polC intein (Pho pol II intein)]
          Length = 1431

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 190  YEVPDPADLLGEVRVAEERLGEPVLHRPVHAVHE 291
            YE+  P +L+G +   E+RLG+P ++  +   H+
Sbjct: 1185 YELKSPKELVGVIERVEDRLGKPEMYYGLKFTHD 1218

>DP2L_PYRAB (Q9V2F4) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
            [Contains: Pab polC intein (Pab pol II intein)]
          Length = 1455

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 190  YEVPDPADLLGEVRVAEERLGEPVLHRPVHAVHE 291
            YE+  P +L+G +   E+RLG+P ++  +   H+
Sbjct: 1207 YELKSPKELVGVIERVEDRLGKPEMYYGLKFTHD 1240

>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)|
           (MMP-15) (Membrane-type matrix metalloproteinase 2)
           (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix
           metalloproteinase) (MT2-MMP) (MT2MMP)
          Length = 657

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 274 PDGGGQVLQGVPLRRVPRRAGRPD-QALRNPQP 179
           PDG  Q  + +P  R PRR GRPD Q  R PQP
Sbjct: 302 PDGKPQPTRPLPTVR-PRRPGRPDHQPPRPPQP 333

>GUX2_TRIRE (P07987) Exoglucanase 2 precursor (EC 3.2.1.91) (Exoglucanase II)|
           (Exocellobiohydrolase II) (CBHII)
           (1,4-beta-cellobiohydrolase)
          Length = 471

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 98  LMNVSATVDDEKNY*LRGQKGVPGFSLWLGITKCLIRPTC--SARYASQRNALENLSSTV 271
           L  ++A+V  E+        G  G   W G T C    TC  S  Y SQ   L   +S+ 
Sbjct: 12  LATLAASVPLEERQACSSVWGQCGGQNWSGPTCCASGSTCVYSNDYYSQ--CLPGAASSS 69

Query: 272 RSTPCTNTSV*MAPILPGASGVHPVGASTMTR 367
            ST   +T+  ++P    +S   P   ST TR
Sbjct: 70  SSTRAASTTSRVSPTTSRSSSATPPPGSTTTR 101

>HIS2_GLOVI (Q7NLB5) Histidine biosynthesis bifunctional protein hisIE|
           [Includes: Phosphoribosyl-AMP cyclohydrolase (EC
           3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase
           (EC 3.6.1.31) (PRA-PH)]
          Length = 218

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 181 AGDYEVPDPADLLGEV-RVAEERLGEP 258
           AGDY++P PAD L +V RV EER   P
Sbjct: 121 AGDYDLP-PADTLSQVFRVVEERKAHP 146

>FADA_ERWCT (Q6DAP6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation|
           complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA
           acyltransferase)
          Length = 387

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 288 VHGVDRTVEDRFSKAFLCDAYLAEQVGRIRHFVIPS 181
           +H + R ++D+F+      AY A Q G  RH ++P+
Sbjct: 157 MHNISREMQDQFAARSHQRAYHATQSGAFRHEIVPT 192

>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane|
           glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen)
           [Contains: Integrin alpha-IIb heavy chain; Integrin
           alpha-IIb light chain]
          Length = 1039

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -3

Query: 331 GGAREDGXXXXXXXXXXRGPDGGGQVLQGVPLRRVPRRAGRPDQALRNPQPQGEA 167
           G    DG           GP G GQVL  V L +      RP Q L +P P G A
Sbjct: 395 GDLDRDGYNDIAVAAPYGGPSGRGQVL--VFLGQSEGLRSRPSQVLDSPFPTGSA 447

>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal)|
           (Fragment)
          Length = 1323

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 275 STPCTNTSV*MAPILPG-ASGVHPVGASTMTRSHSTSWNAAGRP 403
           S PCT+T    AP++ G  SG+    A+ +T S  TS  + G P
Sbjct: 578 SLPCTSTRTGDAPVVGGQVSGLPTSAATAVTDSACTSLGSPGLP 621

>WRKY9_ARATH (Q9C9F0) Probable WRKY transcription factor 9 (WRKY DNA-binding|
           protein 9)
          Length = 374

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 26/91 (28%), Positives = 40/91 (43%)
 Frame = +2

Query: 110 SATVDDEKNY*LRGQKGVPGFSLWLGITKCLIRPTCSARYASQRNALENLSSTVRSTPCT 289
           +AT++D   +   GQK   G        +C + P C  R   QR  LE++S  + +   T
Sbjct: 231 TATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQR-CLEDMSILITTYEGT 289

Query: 290 NTSV*MAPILPGASGVHPVGASTMTRSHSTS 382
           +      P+        PVGA+ M  + STS
Sbjct: 290 HNH----PL--------PVGATAMASTASTS 308

>COFG_METAC (Q8TQP9) FO synthase subunit 1 (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
           subunit 1)
          Length = 329

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 321 GRMGAIYTDVFVHGVDRTVEDRFSKAFLCDAYLAEQVGRIRHFVIPSHREKPGTP 157
           G++   YT   + G+  + EDR        + L  + G I+  +I +   KPGTP
Sbjct: 148 GKLQIPYTSGLLIGIGESREDRIESLEAITS-LHREYGHIQEVIIQNFAPKPGTP 201

>Y2305_MYCTU (Q50660) Hypothetical protein Rv2305/MT2362|
          Length = 429

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
 Frame = +1

Query: 130 KKLLIERAEGRAGLLPVAGDYEVPDPADLLGEVRVAEERLGE---------PVLHR-PVH 279
           K  L     GRA L      +EVPD AD L  V + +E +GE         P LHR PV 
Sbjct: 50  KHALARARLGRASLTARTLYWEVPDRADHLA-VEITDEPVGEVRSRFYARAPELHRSPVF 108

Query: 280 AV 285
           AV
Sbjct: 109 AV 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,499,478
Number of Sequences: 219361
Number of extensions: 1231471
Number of successful extensions: 3179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)