ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
2dbj|AK069867.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
4emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 127 3e-26
5emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F... 127 3e-26
6gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.023
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.023
9gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.36
10gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
11gb|AC109302.9| Mus musculus chromosome 3, clone RP24-331E17, com... 42 1.4
12gb|AC134400.4| Mus musculus chromosome 3, clone RP24-284D6, comp... 42 1.4
13ref|XM_615634.2| PREDICTED: Bos taurus similar to forkhead box O... 42 1.4
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
15gb|AC161866.4| Mus musculus chromosome 3, clone RP24-145B15, com... 42 1.4
16gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.4
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the ... 42 1.4
19dbj|AK099948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
20ref|NM_192262.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
21ref|NM_174674.2| Bos taurus tumor necrosis factor receptor super... 40 5.5
22gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, com... 40 5.5
23ref|XM_841423.1| Trypanosoma brucei TREU927 phospholipase A1 (Tb... 40 5.5
24emb|BX914201.6| Zebrafish DNA sequence from clone DKEYP-108B3 in... 40 5.5
25emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete seq... 40 5.5
26gb|BC113278.1| Bos taurus tumor necrosis factor receptor superfa... 40 5.5
27emb|AJ716154.1| Trypanosoma brucei PLA1 gene for phospholipase A... 40 5.5
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.5
30gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of... 40 5.5
31dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
32dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
33dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.5
34gb|U90937.1|BTU90937 Bos taurus tumor necrosis factor-receptor I... 40 5.5
35gb|U15756.1|TBU15756 Trypanosoma brucei cDNA clone SL-1A-3 40 5.5
36emb|CT025726.15| Mouse DNA sequence from clone RP23-299H17 on ch... 40 5.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                           
Query: 297     cggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccccgtgggcgcgtcca 356
               |||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 5455020 cggtgtagatcgcccccatcctccccggcgactccggcgtccaccccgtcggcgcgtcca 5455079

                                               
Query: 357     ccatgaccaggtcccactccacctcgtggaac 388
               ||||||  ||||||||||||||||||||||||
Sbjct: 5455080 ccatgatgaggtcccactccacctcgtggaac 5455111



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Plus

                                                                           
Query: 148     agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 207
               ||||||||| |||||||||  ||| || | |||||||||||| |||||| | | ||| ||
Sbjct: 5454826 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 5454885

                                                                           
Query: 208     gccgacctgctcggcgaggtacgcgtcgcagaggaacgccttggagaacctgtcctccac 267
                || ||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||
Sbjct: 5454886 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 5454945

                                                 
Query: 268     cgtccggtccacgccgtgcacgaacacgtcggtg 301
                   ||||| ||| |||| |||||||| ||||||
Sbjct: 5454946 gtggcggtcgacgtcgtggacgaacacctcggtg 5454979
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>dbj|AK069867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F14, full
           insert sequence
          Length = 1521

 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                       
Query: 297 cggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccccgtgggcgcgtcca 356
           |||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 809 cggtgtagatcgcccccatcctccccggcgactccggcgtccaccccgtcggcgcgtcca 750

                                           
Query: 357 ccatgaccaggtcccactccacctcgtggaac 388
           ||||||  ||||||||||||||||||||||||
Sbjct: 749 ccatgatgaggtcccactccacctcgtggaac 718



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Minus

                                                                        
Query: 148  agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 207
            ||||||||| |||||||||  ||| || | |||||||||||| |||||| | | ||| ||
Sbjct: 1003 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 944

                                                                        
Query: 208  gccgacctgctcggcgaggtacgcgtcgcagaggaacgccttggagaacctgtcctccac 267
             || ||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||
Sbjct: 943  ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 884

                                              
Query: 268  cgtccggtccacgccgtgcacgaacacgtcggtg 301
                ||||| ||| |||| |||||||| ||||||
Sbjct: 883  gtggcggtcgacgtcgtggacgaacacctcggtg 850
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                           
Query: 297     cggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccccgtgggcgcgtcca 356
               |||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 5455009 cggtgtagatcgcccccatcctccccggcgactccggcgtccaccccgtcggcgcgtcca 5455068

                                               
Query: 357     ccatgaccaggtcccactccacctcgtggaac 388
               ||||||  ||||||||||||||||||||||||
Sbjct: 5455069 ccatgatgaggtcccactccacctcgtggaac 5455100



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Plus

                                                                           
Query: 148     agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 207
               ||||||||| |||||||||  ||| || | |||||||||||| |||||| | | ||| ||
Sbjct: 5454815 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 5454874

                                                                           
Query: 208     gccgacctgctcggcgaggtacgcgtcgcagaggaacgccttggagaacctgtcctccac 267
                || ||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||
Sbjct: 5454875 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 5454934

                                                 
Query: 268     cgtccggtccacgccgtgcacgaacacgtcggtg 301
                   ||||| ||| |||| |||||||| ||||||
Sbjct: 5454935 gtggcggtcgacgtcgtggacgaacacctcggtg 5454968
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                         
Query: 297   cggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccccgtgggcgcgtcca 356
             |||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 10788 cggtgtagatcgcccccatcctccccggcgactccggcgtccaccccgtcggcgcgtcca 10729

                                             
Query: 357   ccatgaccaggtcccactccacctcgtggaac 388
             ||||||  ||||||||||||||||||||||||
Sbjct: 10728 ccatgatgaggtcccactccacctcgtggaac 10697



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Minus

                                                                         
Query: 148   agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 207
             ||||||||| |||||||||  ||| || | |||||||||||| |||||| | | ||| ||
Sbjct: 10982 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 10923

                                                                         
Query: 208   gccgacctgctcggcgaggtacgcgtcgcagaggaacgccttggagaacctgtcctccac 267
              || ||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||
Sbjct: 10922 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 10863

                                               
Query: 268   cgtccggtccacgccgtgcacgaacacgtcggtg 301
                 ||||| ||| |||| |||||||| ||||||
Sbjct: 10862 gtggcggtcgacgtcgtggacgaacacctcggtg 10829
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>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of
            cultivar Nipponbare of ssp. japonica of Oryza sativa
            (rice), complete sequence
          Length = 160556

 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                        
Query: 297  cggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccccgtgggcgcgtcca 356
            |||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 7825 cggtgtagatcgcccccatcctccccggcgactccggcgtccaccccgtcggcgcgtcca 7884

                                            
Query: 357  ccatgaccaggtcccactccacctcgtggaac 388
            ||||||  ||||||||||||||||||||||||
Sbjct: 7885 ccatgatgaggtcccactccacctcgtggaac 7916



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Plus

                                                                        
Query: 148  agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 207
            ||||||||| |||||||||  ||| || | |||||||||||| |||||| | | ||| ||
Sbjct: 7631 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 7690

                                                                        
Query: 208  gccgacctgctcggcgaggtacgcgtcgcagaggaacgccttggagaacctgtcctccac 267
             || ||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||
Sbjct: 7691 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 7750

                                              
Query: 268  cgtccggtccacgccgtgcacgaacacgtcggtg 301
                ||||| ||| |||| |||||||| ||||||
Sbjct: 7751 gtggcggtcgacgtcgtggacgaacacctcggtg 7784
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 234   cgcagaggaacgccttggagaacctgtcctccaccgtccggtccacgccgtgcacgaaca 293
             |||| ||||||||| | ||||||||||||| ||||| |  ||||||| ||||||| | ||
Sbjct: 29735 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 29794

                 
Query: 294   cgtc 297
             ||||
Sbjct: 29795 cgtc 29798
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                           
Query: 234     cgcagaggaacgccttggagaacctgtcctccaccgtccggtccacgccgtgcacgaaca 293
               |||| ||||||||| | ||||||||||||| ||||| |  ||||||| ||||||| | ||
Sbjct: 7570649 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 7570708

                   
Query: 294     cgtc 297
               ||||
Sbjct: 7570709 cgtc 7570712
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                           
Query: 234     cgcagaggaacgccttggagaacctgtcctccaccgtccggtccacgccgtgcacgaaca 293
               |||| ||||||||| | ||||||||||||| ||||| |  ||||||| ||||||| | ||
Sbjct: 7640736 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 7640795

                   
Query: 294     cgtc 297
               ||||
Sbjct: 7640796 cgtc 7640799
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 210    cgacctgctcggcgaggtacgcgtcg 235
              |||||||||||||||||| |||||||
Sbjct: 244625 cgacctgctcggcgaggtccgcgtcg 244600
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>gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1434D10 map
             near E1419S, complete sequence
          Length = 133421

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   cggcgaggtacgcgtcgcaga 239
             |||||||||||||||||||||
Sbjct: 99500 cggcgaggtacgcgtcgcaga 99520
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>gb|AC109302.9| Mus musculus chromosome 3, clone RP24-331E17, complete sequence
          Length = 165229

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    ttcagtatatatatatgctgt 83
             |||||||||||||||||||||
Sbjct: 76476 ttcagtatatatatatgctgt 76496
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>gb|AC134400.4| Mus musculus chromosome 3, clone RP24-284D6, complete sequence
          Length = 190390

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    ttcagtatatatatatgctgt 83
             |||||||||||||||||||||
Sbjct: 33252 ttcagtatatatatatgctgt 33232
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>ref|XM_615634.2| PREDICTED: Bos taurus similar to forkhead box O3A (LOC535530), mRNA
          Length = 3564

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 231 cgtcgcagaggaacgccttggagaacctgtcct 263
           |||||| ||||||||||| || |||||||||||
Sbjct: 449 cgtcgcggaggaacgcctgggggaacctgtcct 481
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      cggcgaggtacgcgtcgcaga 239
                |||||||||||||||||||||
Sbjct: 23804450 cggcgaggtacgcgtcgcaga 23804430
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>gb|AC161866.4| Mus musculus chromosome 3, clone RP24-145B15, complete sequence
          Length = 148729

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     ttcagtatatatatatgctgt 83
              |||||||||||||||||||||
Sbjct: 102430 ttcagtatatatatatgctgt 102410
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 204     tccggccgacctgctcggcga 224
               |||||||||||||||||||||
Sbjct: 1640582 tccggccgacctgctcggcga 1640602
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      cggcgaggtacgcgtcgcaga 239
                |||||||||||||||||||||
Sbjct: 23797538 cggcgaggtacgcgtcgcaga 23797518
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>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome
          Length = 10881

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ggccgacctgctcggcgaggtacgc 231
            |||||||||||| ||||||||||||
Sbjct: 6394 ggccgacctgcttggcgaggtacgc 6418
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>dbj|AK099948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D13, full
            insert sequence
          Length = 1956

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  cggcgaggtacgcgtcgcaga 239
            |||||||||||||||||||||
Sbjct: 1356 cggcgaggtacgcgtcgcaga 1336
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>ref|NM_192262.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4488

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 247  cttggagaacctgtcctccaccgt 270
            |||||||||||||||| |||||||
Sbjct: 3444 cttggagaacctgtccaccaccgt 3421
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>ref|NM_174674.2| Bos taurus tumor necrosis factor receptor superfamily, member 1A
            (TNFRSF1A), mRNA
          Length = 2440

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 311  cccatcctcccgggcgcctccggcgtccaccc 342
            |||||||||||||| ||||||||| |||||||
Sbjct: 1239 cccatcctcccggg-gcctccggcctccaccc 1269
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>gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, complete sequence
          Length = 169739

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ttcatcaagtgccacataac 23
              ||||||||||||||||||||
Sbjct: 139751 ttcatcaagtgccacataac 139770
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>ref|XM_841423.1| Trypanosoma brucei TREU927 phospholipase A1 (Tb927.1.4830) partial
           mRNA
          Length = 903

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  ataacataattaattacctc 38
           ||||||||||||||||||||
Sbjct: 530 ataacataattaattacctc 511
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>emb|BX914201.6| Zebrafish DNA sequence from clone DKEYP-108B3 in linkage group 21,
              complete sequence
          Length = 162420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     cagtatatatatatgctgtg 84
              ||||||||||||||||||||
Sbjct: 142296 cagtatatatatatgctgtg 142315
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>emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete sequence
          Length = 164399

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    tatatatgctgtgtcttgaggtat 95
             |||||||||||| |||||||||||
Sbjct: 98423 tatatatgctgtttcttgaggtat 98400
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>gb|BC113278.1| Bos taurus tumor necrosis factor receptor superfamily, member 1A,
            mRNA (cDNA clone MGC:138050 IMAGE:8082065), complete cds
          Length = 2253

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 311  cccatcctcccgggcgcctccggcgtccaccc 342
            |||||||||||||| ||||||||| |||||||
Sbjct: 1055 cccatcctcccggg-gcctccggcctccaccc 1085
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>emb|AJ716154.1| Trypanosoma brucei PLA1 gene for phospholipase A1, strain 427
          Length = 903

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  ataacataattaattacctc 38
           ||||||||||||||||||||
Sbjct: 530 ataacataattaattacctc 511
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 247      cttggagaacctgtcctccaccgt 270
                |||||||||||||||| |||||||
Sbjct: 25706881 cttggagaacctgtccaccaccgt 25706858
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 346     gggcgcgtccaccatgacca 365
               ||||||||||||||||||||
Sbjct: 6274677 gggcgcgtccaccatgacca 6274696
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>gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of the complete genome
          Length = 10476

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  cccactccacctcgtggaac 388
            ||||||||||||||||||||
Sbjct: 5718 cccactccacctcgtggaac 5737
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>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0004A09
          Length = 158826

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    cttggagaacctgtcctccaccgt 270
              |||||||||||||||| |||||||
Sbjct: 153687 cttggagaacctgtccaccaccgt 153664
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0039G05
          Length = 138429

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 247  cttggagaacctgtcctccaccgt 270
            |||||||||||||||| |||||||
Sbjct: 9345 cttggagaacctgtccaccaccgt 9322
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     cggccgacctgctcggcgag 225
               ||||||||||||||||||||
Sbjct: 4928739 cggccgacctgctcggcgag 4928758
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>gb|U90937.1|BTU90937 Bos taurus tumor necrosis factor-receptor I (TNF-RI) mRNA, complete
            cds
          Length = 2440

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 311  cccatcctcccgggcgcctccggcgtccaccc 342
            |||||||||||||| ||||||||| |||||||
Sbjct: 1239 cccatcctcccggg-gcctccggcctccaccc 1269
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>gb|U15756.1|TBU15756 Trypanosoma brucei cDNA clone SL-1A-3
          Length = 515

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  ataacataattaattacctc 38
           ||||||||||||||||||||
Sbjct: 384 ataacataattaattacctc 403
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>emb|CT025726.15| Mouse DNA sequence from clone RP23-299H17 on chromosome 17, complete
             sequence
          Length = 127014

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ttcatcaagtgccacataac 23
             ||||||||||||||||||||
Sbjct: 83183 ttcatcaagtgccacataac 83164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,080,080
Number of Sequences: 3902068
Number of extensions: 12080080
Number of successful extensions: 73153
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 72551
Number of HSP's gapped (non-prelim): 605
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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