>SPOP_MOUSE (Q6ZWS8) Speckle-type POZ protein (PDX-1 C-terminal-interacting|
           factor 1) (PCIF1)
          Length = 374

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = -3

Query: 281 INVDTAATALALAEQHNCPELKARCVDFIIRTSATLDDVLATEGFKHLEASCPLVVIDLL 102
           ++V+ AA  L LA+ H+  +LK + VDFI   +    DVL T G+K +  S P +V +  
Sbjct: 297 LSVENAAEILILADLHSADQLKTQAVDFI---NYHASDVLETSGWKSMVVSHPHLVAEAY 353

Query: 101 KTARGRKT*GVAGPR 57
           ++    +   +  PR
Sbjct: 354 RSLASAQCPFLGPPR 368

>SPOP_HUMAN (O43791) Speckle-type POZ protein|
          Length = 374

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = -3

Query: 281 INVDTAATALALAEQHNCPELKARCVDFIIRTSATLDDVLATEGFKHLEASCPLVVIDLL 102
           ++V+ AA  L LA+ H+  +LK + VDFI   +    DVL T G+K +  S P +V +  
Sbjct: 297 LSVENAAEILILADLHSADQLKTQAVDFI---NYHASDVLETSGWKSMVVSHPHLVAEAY 353

Query: 101 KTARGRKT*GVAGPR 57
           ++    +   +  PR
Sbjct: 354 RSLASAQCPFLGPPR 368

>LONM_CAEEL (O44952) Lon protease homolog, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 971

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +1

Query: 94  AVLRRSITTSGQLASRCLKPSVANTSSRVAEVLIMKSTHLAFSSGQ 231
           AVL R  T +  LA+     S A  S R   +L+MKS  LA +SG+
Sbjct: 6   AVLLRGATRTRLLAAASAHQSFATFSQRNQSILMMKSMELAGNSGE 51

>CFC1_HUMAN (Q9GZR3) Cryptic protein precursor|
          Length = 223

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 22  DFKQIQYHGPSNLGPATPQVFLPRAVLRRSITTSGQLASRCLKPSVANTSSR 177
           DF     HGPS  G  +  + LP A+L R +        R L PSV     R
Sbjct: 161 DFLASHAHGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVPSVLQRERR 212

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 116 PPVGSLPRGV*NPPSPTHHQEWQRF***NQHTSPLAPGSCAARLKPKLSL 265
           PP G  PR + NPP+P+   + Q     + H +P    S  +   P  SL
Sbjct: 162 PPTG--PRSILNPPTPSQQHQQQ-----HHHPNPFVAASAPSLPPPPSSL 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,526,273
Number of Sequences: 219361
Number of extensions: 837460
Number of successful extensions: 2032
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)