ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106050.1| Zea mays PCO102595 mRNA sequence 129 5e-27
2ref|XM_480152.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
3dbj|AK058325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
5dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
6dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
7dbj|AK101430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
8ref|NM_001031123.1| Gallus gallus similar to ubiquitin specific ... 44 0.25
9emb|AJ851557.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.25
10gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, comple... 44 0.25
11gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, comp... 42 0.97
12gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, com... 42 0.97
13emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in ... 42 0.97
14gb|DQ311369.1| Bombyx mori L-isoaspartyl protein carboxyl methyl... 42 0.97
15gb|AC110375.4| Mus musculus BAC clone RP23-409L20 from 18, compl... 42 0.97
16emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, ... 42 0.97
17gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 3.8
18ref|XM_474089.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
19gb|BC078673.1| Homo sapiens cDNA clone IMAGE:6090579 40 3.8
20gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
21gb|AY040231.1| Mus musculus signal transducer and activator of t... 40 3.8
22gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, com... 40 3.8
23gb|BC024319.1| Mus musculus signal transducer and activator of t... 40 3.8
24emb|AL845472.3| Human DNA sequence from clone RP11-4L24 on chrom... 40 3.8
25emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on ch... 40 3.8
26emb|AL391986.12| Human DNA sequence from clone RP11-426E5 on chr... 40 3.8
27gb|BC056149.1| Homo sapiens cDNA clone IMAGE:5491941, partial cds 40 3.8
28emb|AL139158.11| Human DNA sequence from clone RP5-884C9 on chro... 40 3.8
29gb|AC145203.1| Homo sapiens chromosome 19 clone XXfos-800752H11,... 40 3.8
30emb|Z48539.1|MMSTAT5B M.musculus mRNA for stat5b 40 3.8
31gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, c... 40 3.8
32gb|AY044903.1| Mus musculus strain C3H signal transducer and act... 40 3.8
33gb|AY044902.1| Mus musculus strain CBA signal transducer and act... 40 3.8
34gb|AY044901.1| Mus musculus strain BALB/c signal transducer and ... 40 3.8
35emb|AL832870.1|HSM804181 Homo sapiens mRNA; cDNA DKFZp667F103 (f... 40 3.8
36dbj|AK092175.1| Homo sapiens cDNA FLJ34856 fis, clone NT2NE2012493 40 3.8
37gb|BC025967.1| Homo sapiens, Similar to LOC152686, clone IMAGE:2... 40 3.8
38dbj|AK150098.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 3.8
39dbj|AK154014.1| Mus musculus 2 days neonate thymus thymic cells ... 40 3.8
40dbj|AK154664.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 3.8
41ref|XM_927235.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 3.8
42ref|XM_926721.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 3.8
43ref|XM_940763.1| PREDICTED: Homo sapiens similar to transmembran... 40 3.8
44ref|XM_940758.1| PREDICTED: Homo sapiens transmembrane protein 7... 40 3.8
45ref|XM_926944.1| PREDICTED: Homo sapiens similar to transmembran... 40 3.8
46ref|XM_372038.4| PREDICTED: Homo sapiens transmembrane protein 7... 40 3.8
47gb|AC092315.2| Homo sapiens chromosome 19 clone LLNLR-306A10, co... 40 3.8
48dbj|AK045531.1| Mus musculus adult male corpora quadrigemina cDN... 40 3.8
49dbj|AK004071.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 3.8
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
51dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
52gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 3.8
53gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, comple... 40 3.8
54gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete ... 40 3.8
55dbj|AB086653.1| Streptomyces halstedii vicenistatin biosynthetic... 40 3.8
56gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell ... 40 3.8
57dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.8
58emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.8
59emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.8
60emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a... 40 3.8
61gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 3.8
62emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 40 3.8
63gb|AC134585.6| Mus musculus BAC clone RP23-302F9 from 8, complet... 40 3.8
64gb|AC138460.4| Mus musculus BAC clone RP23-295A7 from 8, complet... 40 3.8
65emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chr... 40 3.8
66emb|AL805936.8| Mouse DNA sequence from clone RP23-120K6 on chro... 40 3.8 
>gb|AY106050.1| Zea mays PCO102595 mRNA sequence
          Length = 1415

 Score =  129 bits (65), Expect = 5e-27
 Identities = 131/153 (85%)
 Strand = Plus / Minus

                                                                        
Query: 130  aaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctggttcg 189
            |||||||||| |||||||| |||||  | ||||||||||| ||||| || || |||||| 
Sbjct: 1234 aaacattgggaggtggccagatcttcccaaagagctcctcaacgcggcgtgcttggttca 1175

                                                                        
Query: 190  cgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgccgcca 249
            |||||||||| ||||| ||||| ||||| ||||| || || || ||||| || || | ||
Sbjct: 1174 cgtacccctctagccctgaagcaagcagttcttctgcagctggtcccatggcagctgaca 1115

                                             
Query: 250  ggctcagctggtcccacttcacaagctcctctt 282
            |||||||||||||||||||||||||||||||||
Sbjct: 1114 ggctcagctggtcccacttcacaagctcctctt 1082
to top
>ref|XM_480152.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1618

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 128/157 (81%)
 Strand = Plus / Minus

                                                                        
Query: 126  gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
            ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 1270 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 1211

                                                                        
Query: 186  ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
            ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 1210 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 1151

                                                 
Query: 246  gccaggctcagctggtcccacttcacaagctcctctt 282
            || || ||||  |||||||||||||||||||||||||
Sbjct: 1150 gctagactcaattggtcccacttcacaagctcctctt 1114
to top
>dbj|AK058325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B10, full
            insert sequence
          Length = 1618

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 128/157 (81%)
 Strand = Plus / Minus

                                                                        
Query: 126  gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
            ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 1270 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 1211

                                                                        
Query: 186  ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
            ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 1210 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 1151

                                                 
Query: 246  gccaggctcagctggtcccacttcacaagctcctctt 282
            || || ||||  |||||||||||||||||||||||||
Sbjct: 1150 gctagactcaattggtcccacttcacaagctcctctt 1114
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 122/151 (80%)
 Strand = Plus / Plus

                                                                           
Query: 126     gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
               ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 3122372 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 3122431

                                                                           
Query: 186     ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
               ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 3122432 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 3122491

                                              
Query: 246     gccaggctcagctggtcccacttcacaagct 276
               || || ||||  |||||||||||||||||||
Sbjct: 3122492 gctagactcaattggtcccacttcacaagct 3122522
to top
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1349_D05
          Length = 174478

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 122/151 (80%)
 Strand = Plus / Plus

                                                                          
Query: 126    gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
              ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 173095 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 173154

                                                                          
Query: 186    ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
              ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 173155 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 173214

                                             
Query: 246    gccaggctcagctggtcccacttcacaagct 276
              || || ||||  |||||||||||||||||||
Sbjct: 173215 gctagactcaattggtcccacttcacaagct 173245
to top
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 122/151 (80%)
 Strand = Plus / Plus

                                                                         
Query: 126   gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
             ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 81856 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 81915

                                                                         
Query: 186   ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
             ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 81916 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 81975

                                            
Query: 246   gccaggctcagctggtcccacttcacaagct 276
             || || ||||  |||||||||||||||||||
Sbjct: 81976 gctagactcaattggtcccacttcacaagct 82006
to top
>dbj|AK101430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038K01, full
            insert sequence
          Length = 2631

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 122/151 (80%)
 Strand = Plus / Minus

                                                                        
Query: 126  gttcaaacattggggggtggccacatcttggcgaagagctcctccacgcgccgcgcctgg 185
            ||||||||||| || || ||||| |||||  ||||||| |||||||| || || || |||
Sbjct: 2215 gttcaaacattcggaggaggccagatcttcccgaagagttcctccactcggcgtgcttgg 2156

                                                                        
Query: 186  ttcgcgtacccctccagcccggaagccagcagctcttccgccgccggccccatcgccgcc 245
            ||| | || || |||| ||| ||||| || || |||||||| || |||||||| || || 
Sbjct: 2155 ttcacatatccttccaacccagaagcaagtagttcttccgcagctggccccattgcagct 2096

                                           
Query: 246  gccaggctcagctggtcccacttcacaagct 276
            || || ||||  |||||||||||||||||||
Sbjct: 2095 gctagactcaattggtcccacttcacaagct 2065
to top
>ref|NM_001031123.1| Gallus gallus similar to ubiquitin specific protease 12; ubiquitin
           hydrolyzing enzyme 1 (LOC422322), mRNA
          Length = 5355

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 223 ccgccgccggccccatcgccgccgcc 248
           ||||||||||||||| ||||||||||
Sbjct: 54  ccgccgccggccccagcgccgccgcc 29
to top
>emb|AJ851557.1| Gallus gallus mRNA for hypothetical protein, clone 7a13
          Length = 5355

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 223 ccgccgccggccccatcgccgccgcc 248
           ||||||||||||||| ||||||||||
Sbjct: 54  ccgccgccggccccagcgccgccgcc 29
to top
>gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, complete sequence
          Length = 124367

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 243   gccgccaggctcagctggtccc 264
             ||||||||||||||||||||||
Sbjct: 73932 gccgccaggctcagctggtccc 73953
to top
>gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, complete sequence
          Length = 217116

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 27   aagtaacagcatgttgacaag 47
            |||||||||||||||||||||
Sbjct: 5462 aagtaacagcatgttgacaag 5442
to top
>gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, complete sequence
          Length = 270111

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     aagtaacagcatgttgacaag 47
              |||||||||||||||||||||
Sbjct: 158212 aagtaacagcatgttgacaag 158232
to top
>emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in linkage group 6,
            complete sequence
          Length = 83282

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   ttacaaggacaaaagtaacag 35
            |||||||||||||||||||||
Sbjct: 8025 ttacaaggacaaaagtaacag 8045
to top
>gb|DQ311369.1| Bombyx mori L-isoaspartyl protein carboxyl methyltransferase mRNA,
           complete cds
          Length = 865

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 83  aatattactaccaccaagaaagaag 107
           ||||||||||||||||| |||||||
Sbjct: 14  aatattactaccaccaataaagaag 38
to top
>gb|AC110375.4| Mus musculus BAC clone RP23-409L20 from 18, complete sequence
          Length = 191505

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    aagtaacagcatgttgacaag 47
             |||||||||||||||||||||
Sbjct: 27749 aagtaacagcatgttgacaag 27769
to top
>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence
          Length = 188745

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     ttacaaggacaaaagtaacag 35
              |||||||||||||||||||||
Sbjct: 154838 ttacaaggacaaaagtaacag 154858
to top
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     cggaagccagcagctcttcc 224
               ||||||||||||||||||||
Sbjct: 2039157 cggaagccagcagctcttcc 2039138
to top
>ref|XM_474089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1308

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 224 cgccgccggccccatcgccgccgc 247
           ||||||||||||| ||||||||||
Sbjct: 284 cgccgccggccccgtcgccgccgc 307
to top
>gb|BC078673.1| Homo sapiens cDNA clone IMAGE:6090579
          Length = 2676

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 225  gccgccggccccatcgccgccgcc 248
            ||||||||||| ||||||||||||
Sbjct: 1873 gccgccggcccaatcgccgccgcc 1896
to top
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0053D02, complete sequence
          Length = 157106

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   ccgccgccggccccatcgccgccg 246
             |||||||| |||||||||||||||
Sbjct: 57566 ccgccgcctgccccatcgccgccg 57543
to top
>gb|AY040231.1| Mus musculus signal transducer and activator of transcription 5B
            (Stat5b) mRNA, complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2798 aagagctcttccacgcgccgcgcc 2775
to top
>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence
          Length = 191821

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 12    acattacaaggacaaaagtaacagcatgttga 43
             |||||| ||||| |||||||||||||||||||
Sbjct: 11108 acattaaaagga-aaaagtaacagcatgttga 11078
to top
>gb|BC024319.1| Mus musculus signal transducer and activator of transcription 5B,
            mRNA (cDNA clone MGC:18421 IMAGE:4237132), complete cds
          Length = 4893

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2468 aagagctcttccacgcgccgcgcc 2445
to top
>emb|AL845472.3| Human DNA sequence from clone RP11-4L24 on chromosome 9 Contains a
             pseudogene similar to part of myosin VB (MYO5B), a tumor
             suppressor deleted in oral cancer-related 1 (DOC-1R)
             pseudogene and a CpG island, complete sequence
          Length = 42569

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   cccggaagccagcagctctt 222
             ||||||||||||||||||||
Sbjct: 36770 cccggaagccagcagctctt 36789
to top
>emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on chromosome 9 Contains
             three novel genes, a novel pseudogene, two novel
             pseudogenes (LOC339742), a tumor suppressor deleted in
             oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene
             similar to part of prostaglandin E receptor 4 (subtype
             EP4) (PTGER4), a pseudogene similar to part of myosin VA
             (heavy polypeptide 12, myoxin) (MYO5A), a pseudogene
             similar to part of G protein-coupled receptor 116
             (GPR116), a pseudogene similar to part of fibroblast
             growth factor 7 (keratinocyte growth factor) (FGF7) and
             five CpG islands, complete sequence
          Length = 159539

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   cccggaagccagcagctctt 222
             ||||||||||||||||||||
Sbjct: 38500 cccggaagccagcagctctt 38481
to top
>emb|AL391986.12| Human DNA sequence from clone RP11-426E5 on chromosome 10 Contains the
              gene for mitochondrial glycerol 3-phosphate acyltransferase
              (KIAA1560) (GPAM, MGC26846) and the TECTB gene for tectorin
              beta, complete sequence
          Length = 196657

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     acaaacagaagaccactttgttgg 76
              |||||||||||||||| |||||||
Sbjct: 193044 acaaacagaagaccacattgttgg 193067
to top
>gb|BC056149.1| Homo sapiens cDNA clone IMAGE:5491941, partial cds
          Length = 2556

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 2505 acattaaaagga-aaaagtaacagcatgttga 2475
to top
>emb|AL139158.11| Human DNA sequence from clone RP5-884C9 on chromosome 1p34.1-35.3,
             complete sequence
          Length = 115614

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   gccgccggccccatcgccgccgcc 248
             ||||||||||| ||||||||||||
Sbjct: 20915 gccgccggcccaatcgccgccgcc 20938
to top
>gb|AC145203.1| Homo sapiens chromosome 19 clone XXfos-800752H11, complete sequence
          Length = 41422

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   aggctcagctggtcccacttcaca 272
             ||||||||||||||||| ||||||
Sbjct: 30827 aggctcagctggtcccatttcaca 30850
to top
>emb|Z48539.1|MMSTAT5B M.musculus mRNA for stat5b
          Length = 2574

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2412 aagagctcttccacgcgccgcgcc 2389
to top
>gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, complete sequence
          Length = 167843

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 83     aatattactaccaccaagaaagaagaaa 110
              ||||||||||||||| ||||||||||||
Sbjct: 144132 aatattactaccacc-agaaagaagaaa 144158
to top
>gb|AY044903.1| Mus musculus strain C3H signal transducer and activator of
            transcription 5B (Stat5b) mRNA, complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2798 aagagctcttccacgcgccgcgcc 2775
to top
>gb|AY044902.1| Mus musculus strain CBA signal transducer and activator of
            transcription 5B (Stat5b) mRNA, complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2798 aagagctcttccacgcgccgcgcc 2775
to top
>gb|AY044901.1| Mus musculus strain BALB/c signal transducer and activator of
            transcription 5B (Stat5b) mRNA, complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2798 aagagctcttccacgcgccgcgcc 2775
to top
>emb|AL832870.1|HSM804181 Homo sapiens mRNA; cDNA DKFZp667F103 (from clone DKFZp667F103)
          Length = 2772

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 2726 acattaaaagga-aaaagtaacagcatgttga 2696
to top
>dbj|AK092175.1| Homo sapiens cDNA FLJ34856 fis, clone NT2NE2012493
          Length = 2103

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 cccggaagccagcagctctt 222
           ||||||||||||||||||||
Sbjct: 66  cccggaagccagcagctctt 85
to top
>gb|BC025967.1| Homo sapiens, Similar to LOC152686, clone IMAGE:2819658, mRNA
          Length = 1193

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 cccggaagccagcagctctt 222
           ||||||||||||||||||||
Sbjct: 972 cccggaagccagcagctctt 991
to top
>dbj|AK150098.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:G530129A19 product:signal transducer and
            activator of transcription 5B, full insert sequence
          Length = 4812

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2481 aagagctcttccacgcgccgcgcc 2458
to top
>dbj|AK154014.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430022O15
            product:signal transducer and activator of transcription
            5B, full insert sequence
          Length = 3005

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2844 aagagctcttccacgcgccgcgcc 2821
to top
>dbj|AK154664.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630102J21
            product:signal transducer and activator of transcription
            5B, full insert sequence
          Length = 4887

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2478 aagagctcttccacgcgccgcgcc 2455
to top
>ref|XM_927235.1| PREDICTED: Homo sapiens hypothetical protein LOC643985 (LOC643985),
            mRNA
          Length = 4142

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  cccggaagccagcagctctt 222
            ||||||||||||||||||||
Sbjct: 1063 cccggaagccagcagctctt 1082
to top
>ref|XM_926721.1| PREDICTED: Homo sapiens hypothetical protein LOC643389 (LOC643389),
           mRNA
          Length = 4028

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 cccggaagccagcagctctt 222
           ||||||||||||||||||||
Sbjct: 969 cccggaagccagcagctctt 988
to top
>ref|XM_940763.1| PREDICTED: Homo sapiens similar to transmembrane protein 76
            (LOC651587), mRNA
          Length = 3417

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 3386 acattaaaagga-aaaagtaacagcatgttga 3356
to top
>ref|XM_940758.1| PREDICTED: Homo sapiens transmembrane protein 76 (TMEM76), mRNA
          Length = 5691

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 5660 acattaaaagga-aaaagtaacagcatgttga 5630
to top
>ref|XM_926944.1| PREDICTED: Homo sapiens similar to transmembrane protein 76
            (LOC643642), mRNA
          Length = 3417

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 3386 acattaaaagga-aaaagtaacagcatgttga 3356
to top
>ref|XM_372038.4| PREDICTED: Homo sapiens transmembrane protein 76 (TMEM76), mRNA
          Length = 5198

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 12   acattacaaggacaaaagtaacagcatgttga 43
            |||||| ||||| |||||||||||||||||||
Sbjct: 5167 acattaaaagga-aaaagtaacagcatgttga 5137
to top
>gb|AC092315.2| Homo sapiens chromosome 19 clone LLNLR-306A10, complete sequence
          Length = 44735

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   aggctcagctggtcccacttcaca 272
             ||||||||||||||||| ||||||
Sbjct: 38921 aggctcagctggtcccatttcaca 38944
to top
>dbj|AK045531.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230209B11 product:signal
            transducer and activator of transcription 5B, full insert
            sequence
          Length = 4986

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aagagctcctccacgcgccgcgcc 182
            |||||||| |||||||||||||||
Sbjct: 2655 aagagctcttccacgcgccgcgcc 2632
to top
>dbj|AK004071.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110033L09 product:signal
           transducer and activator of transcription 5B, full
           insert sequence
          Length = 1579

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 aagagctcctccacgcgccgcgcc 182
           |||||||| |||||||||||||||
Sbjct: 38  aagagctcttccacgcgccgcgcc 15
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 224      cgccgccggccccatcgccgccgc 247
                ||||||||||||| ||||||||||
Sbjct: 32812757 cgccgccggccccgtcgccgccgc 32812734
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 223      ccgccgccggccccatcgccgccg 246
                |||||||| |||||||||||||||
Sbjct: 27827149 ccgccgcctgccccatcgccgccg 27827126
to top
>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 12     acattacaaggacaaaagtaacagcatgttga 43
              |||||| ||||| |||||||||||||||||||
Sbjct: 157957 acattaaaagga-aaaagtaacagcatgttga 157927
to top
>gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, complete cds
          Length = 71512

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   aagagctcctccacgcgccgcgcc 182
             |||||||| |||||||||||||||
Sbjct: 68101 aagagctcttccacgcgccgcgcc 68078
to top
>gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete sequence
          Length = 132352

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     ctaccaccaagaaagaagaa 109
              ||||||||||||||||||||
Sbjct: 118591 ctaccaccaagaaagaagaa 118610
to top
>dbj|AB086653.1| Streptomyces halstedii vicenistatin biosynthetic gene cluster (vinR1,
            vinA, vinB, vinC, vinP2, vinP3, vinP4, vinG, vinF, vinD,
            vinE, vinH, vinI, vinJ, vinK, vinL, vinM, vinN, vinO,
            vinP1), partial and complete cds
          Length = 64492

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  cgccggccccatcgccgccg 246
            ||||||||||||||||||||
Sbjct: 3191 cgccggccccatcgccgccg 3210
to top
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    aagagctcctccacgcgccgcgcc 182
              |||||||| |||||||||||||||
Sbjct: 178455 aagagctcttccacgcgccgcgcc 178432
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 225     gccgccggccccatcgccgccgcc 248
               |||||||||||| |||||||||||
Sbjct: 7886492 gccgccggccccttcgccgccgcc 7886469
to top
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   cgccgccggccccatcgccgccgc 247
             ||||||||||||| ||||||||||
Sbjct: 85670 cgccgccggccccgtcgccgccgc 85647
to top
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
            sequence
          Length = 76546

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 224  cgccgccggccccatcgccgccgc 247
            ||||||||||||| ||||||||||
Sbjct: 7774 cgccgccggccccgtcgccgccgc 7751
to top
>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE
          Length = 128818

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ttacaaggacaaaagtaaca 34
             ||||||||||||||||||||
Sbjct: 94319 ttacaaggacaaaagtaaca 94300
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     cgaagagctcctccacgcgc 176
               ||||||||||||||||||||
Sbjct: 2169927 cgaagagctcctccacgcgc 2169946
to top
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   cgccgccggccccatcgccgccgc 247
             ||||||||||||| ||||||||||
Sbjct: 75043 cgccgccggccccgtcgccgccgc 75020
to top
>gb|AC134585.6| Mus musculus BAC clone RP23-302F9 from 8, complete sequence
          Length = 249251

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   ccacttcacaagctcctctt 282
             ||||||||||||||||||||
Sbjct: 39898 ccacttcacaagctcctctt 39917
to top
>gb|AC138460.4| Mus musculus BAC clone RP23-295A7 from 8, complete sequence
          Length = 186258

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   ccacttcacaagctcctctt 282
             ||||||||||||||||||||
Sbjct: 29880 ccacttcacaagctcctctt 29861
to top
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete
              sequence
          Length = 239847

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    aagagctcctccacgcgccgcgcc 182
              |||||||| |||||||||||||||
Sbjct: 212772 aagagctcttccacgcgccgcgcc 212749
to top
>emb|AL805936.8| Mouse DNA sequence from clone RP23-120K6 on chromosome X, complete
             sequence
          Length = 151030

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ttccaacccaagttcaaaca 134
             ||||||||||||||||||||
Sbjct: 92814 ttccaacccaagttcaaaca 92833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,975,573
Number of Sequences: 3902068
Number of extensions: 2975573
Number of successful extensions: 68273
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 67970
Number of HSP's gapped (non-prelim): 312
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top