Clone Name | rbart43h09 |
---|---|
Clone Library Name | barley_pub |
>emb|AL390243.22| Human DNA sequence from clone RP6-102O10 on chromosome 1p32.1-33 Contains a novel gene, complete sequence Length = 84595 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 36 tacttaaaacacatataaatatcaaatacagat 68 |||||| |||||||||||||| ||||||||||| Sbjct: 12539 tacttacaacacatataaataacaaatacagat 12507
>gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete sequence Length = 43907 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 cttactttttacttaaaacaca 48 |||||||||||||||||||||| Sbjct: 19427 cttactttttacttaaaacaca 19406
>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the gene for a novel thioesterase domain containing protein (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the gene for a novel protein (FLJ38219), the gene for a novel protein, the NMT2 gene for N-myristoyltransferase 2, the 3' end of the gene for a novel protein (LOC221061), a novel gene, a pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete sequence Length = 194802 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 atataaatatcaaatacagat 68 ||||||||||||||||||||| Sbjct: 125066 atataaatatcaaatacagat 125046
>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence Length = 183066 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 taaatatcaaatacagatcat 71 ||||||||||||||||||||| Sbjct: 87703 taaatatcaaatacagatcat 87683
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA decarboxylase 2 (OSJNBa0032N04.8), mRNA Length = 1581 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 agcccgatcctggaccaccttcca 287 ||||||||||||||| |||||||| Sbjct: 1545 agcccgatcctggacaaccttcca 1522
>gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, complete sequence Length = 213113 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tacttaaaacacatataaat 55 |||||||||||||||||||| Sbjct: 49506 tacttaaaacacatataaat 49487
>gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's Hospital Oakland Research Institute) complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctttttacttaaaacacata 50 |||||||||||||||||||| Sbjct: 108359 ctttttacttaaaacacata 108378
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032N04, from chromosome 10, complete sequence Length = 159445 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 agcccgatcctggaccaccttcca 287 ||||||||||||||| |||||||| Sbjct: 62170 agcccgatcctggacaaccttcca 62193
>gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 214988 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctttttacttaaaacacata 50 |||||||||||||||||||| Sbjct: 66077 ctttttacttaaaacacata 66096
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0019N10, from chromosome 10, complete sequence Length = 192267 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 agcccgatcctggaccaccttcca 287 ||||||||||||||| |||||||| Sbjct: 170210 agcccgatcctggacaaccttcca 170187
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 agcccgatcctggaccaccttcca 287 ||||||||||||||| |||||||| Sbjct: 11744109 agcccgatcctggacaaccttcca 11744132
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 agcccgatcctggaccaccttcca 287 ||||||||||||||| |||||||| Sbjct: 11751449 agcccgatcctggacaaccttcca 11751472
>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence Length = 151729 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 31 ctttttacttaaaacacatataaatatc 58 ||||||| |||||||| ||||||||||| Sbjct: 131490 ctttttaattaaaacaaatataaatatc 131517 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,443,736 Number of Sequences: 3902068 Number of extensions: 3443736 Number of successful extensions: 71194 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71131 Number of HSP's gapped (non-prelim): 63 length of query: 309 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 287 effective length of database: 17,147,199,772 effective search space: 4921246334564 effective search space used: 4921246334564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)