ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15NG4_PINTA (Q6J163) Auxin-induced protein 5NG4 47 8e-06
2CCS_PIG (Q6PWT7) Copper chaperone for superoxide dismutase (Supe... 33 0.16
3CCS_MOUSE (Q9WU84) Copper chaperone for superoxide dismutase (Su... 33 0.16
4CCS_RAT (Q9JK72) Copper chaperone for superoxide dismutase (Supe... 32 0.47
5LPXH_RALSO (Q8Y081) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.... 31 0.80
6K0323_HUMAN (O15037) Protein KIAA0323 28 5.2
7ERG24_SEPLY (O13597) Delta(14)-sterol reductase (EC 1.3.1.70) (C... 28 5.2
8DOF16_ARATH (Q9SX97) Hypothetical Dof zinc finger protein DOF1.6... 28 6.8

>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = -1

Query: 399 GPVFVTAFNPLCMIITAILGSIILKEEINLGSXXXXXXXXXGLYFLIWGKSKDE 238
           GPVFV  + P+  I  AI+ SIIL E+  LG          GLY ++WGKS+++
Sbjct: 291 GPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEK 344



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>CCS_PIG (Q6PWT7) Copper chaperone for superoxide dismutase (Superoxide|
           dismutase copper chaperone)
          Length = 274

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 394 GVCHGIQPALHDHNRHLGLHHSQGGDQSRKCDWCCDH 284
           G   G++P LH      GLH  Q GD +R C+ C DH
Sbjct: 117 GTIDGLKPGLH------GLHVHQFGDLTRNCNSCGDH 147



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>CCS_MOUSE (Q9WU84) Copper chaperone for superoxide dismutase (Superoxide|
           dismutase copper chaperone)
          Length = 274

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 394 GVCHGIQPALHDHNRHLGLHHSQGGDQSRKCDWCCDH 284
           G   G++P LH      GLH  Q GD +R C+ C DH
Sbjct: 117 GTIDGLEPGLH------GLHVHQYGDLTRDCNSCGDH 147



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>CCS_RAT (Q9JK72) Copper chaperone for superoxide dismutase (Superoxide|
           dismutase copper chaperone)
          Length = 274

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 394 GVCHGIQPALHDHNRHLGLHHSQGGDQSRKCDWCCDH 284
           G   G++P LH      GLH  Q GD ++ C  C DH
Sbjct: 117 GTIDGLEPGLH------GLHVHQYGDLTKDCSSCGDH 147



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>LPXH_RALSO (Q8Y081) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)|
          Length = 268

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 382 GIQPALHDHNRHLGLHHSQGGDQSRKCDWCCDH 284
           GI   +H H     LHH  GG++    DW  DH
Sbjct: 214 GIPLLIHGHTHRPRLHHEPGGERWVLSDWDFDH 246



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>K0323_HUMAN (O15037) Protein KIAA0323|
          Length = 678

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 153 KQELGNGNGGHVIGVETPAANGHC*SKA-SIGVAILQYIRS 34
           K+E+  G GG  +  E P A+G C   A S G ++LQ + +
Sbjct: 309 KEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHN 349



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>ERG24_SEPLY (O13597) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol|
           reductase) (Sterol C14-reductase)
          Length = 512

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 106 DAGSQWTLLVKGIDWSSYTPIHTIIDPSVYIFPGI 2
           D+  +WT L+ GI   +  P+  II  SVY+F  +
Sbjct: 273 DSMRKWTPLLLGIHVLTIHPVIVIISQSVYVFDAL 307



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>DOF16_ARATH (Q9SX97) Hypothetical Dof zinc finger protein DOF1.6 (AtDOF1.6)|
          Length = 209

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 192 LTSMTNGHASVSSKQELGNGNGG 124
           +T++ +GH S +S   LG+GNGG
Sbjct: 120 VTNLISGHGSFASLLGLGSGNGG 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,268,093
Number of Sequences: 219361
Number of extensions: 744214
Number of successful extensions: 2242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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