ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467979.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
2dbj|AK073339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
4dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
6dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7ref|NM_195136.1| Oryza sativa (japonica cultivar-group) putative... 64 4e-07
8gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, c... 50 0.006
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
11ref|XM_463798.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.023
12dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
13dbj|AK070945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
14gb|AY598782.1| Simian adenovirus 3 strain ATCC VR-1449, complete... 44 0.35
15ref|NM_113724.1| Arabidopsis thaliana unknown protein AT3G28060 ... 42 1.4
16ref|NM_125653.3| Arabidopsis thaliana VEX1 AT5G62580 (VEX1) mRNA... 42 1.4
17gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotei... 42 1.4
18gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome 42 1.4
19gb|BT010752.1| Arabidopsis thaliana At5g62580 gene, complete cds 42 1.4
20emb|BX649363.11| Zebrafish DNA sequence from clone CH211-13C3 in... 42 1.4
21gb|AC046168.12| Homo sapiens chromosome 15, clone RP11-307C19, c... 42 1.4
22gb|AY069877.1| Arabidopsis thaliana AT5g62580/K19B1_19 mRNA, com... 42 1.4
23gb|AE004537.1| Pseudomonas aeruginosa PAO1, section 98 of 529 of... 42 1.4
24dbj|AB015469.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.4
25gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus lon... 42 1.4
26gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.5
27gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 40 5.5
28gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, compl... 40 5.5
29ref|XM_570690.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 5.5
30gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome... 40 5.5
31emb|BX088550.5| Human DNA sequence from clone RP13-444H2 on chro... 40 5.5
32emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chro... 40 5.5
33gb|AC098477.2| Homo sapiens chromosome 3 clone RP11-733H11, comp... 40 5.5
34gb|AC108077.3| Homo sapiens BAC clone RP11-739G21 from 4, comple... 40 5.5
35ref|XM_690060.1| PREDICTED: Danio rerio similar to Crebbp protei... 40 5.5
36gb|AC000159.6| Homo sapiens Chromosome 11q13 BAC Clone b79g17, c... 40 5.5
37gb|AC096731.3| Homo sapiens BAC clone RP11-72C15 from 4, complet... 40 5.5
38gb|AC010975.9| Homo sapiens BAC clone RP11-191H23 from 2, comple... 40 5.5
39gb|AC100823.3| Homo sapiens chromosome 8, clone RP11-956J14, com... 40 5.5
40emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in ... 40 5.5
41dbj|AP001187.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.5 
>ref|XM_467979.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score =  125 bits (63), Expect = 1e-25
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgatgatcacagcaccaatcacacttccgagattgatctcctccttgagaatgatggag 340
           ||||||||||| || || ||||| ||||| || ||||| || ||||||||||||||||||
Sbjct: 976 acgatgatcaccgcgccgatcacgcttccaaggttgatttcttccttgagaatgatggag 917

                                                                       
Query: 341 cccaagatggcggttatgatcatgcagagcgggttgaatgccgtgacaaacaccggcccc 400
           |||| ||||||||| |||||||||||||||||||||||||| || || ||||| || |||
Sbjct: 916 cccatgatggcggtgatgatcatgcagagcgggttgaatgctgtcacgaacactgggccc 857

                      
Query: 401 ctttgcttcga 411
           || ||| ||||
Sbjct: 856 ctctgcctcga 846
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>dbj|AK073339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030K15, full
           insert sequence
          Length = 1398

 Score =  125 bits (63), Expect = 1e-25
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgatgatcacagcaccaatcacacttccgagattgatctcctccttgagaatgatggag 340
           ||||||||||| || || ||||| ||||| || ||||| || ||||||||||||||||||
Sbjct: 976 acgatgatcaccgcgccgatcacgcttccaaggttgatttcttccttgagaatgatggag 917

                                                                       
Query: 341 cccaagatggcggttatgatcatgcagagcgggttgaatgccgtgacaaacaccggcccc 400
           |||| ||||||||| |||||||||||||||||||||||||| || || ||||| || |||
Sbjct: 916 cccatgatggcggtgatgatcatgcagagcgggttgaatgctgtcacgaacactgggccc 857

                      
Query: 401 ctttgcttcga 411
           || ||| ||||
Sbjct: 856 ctctgcctcga 846
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 305      cttccgagattgatctcctccttgagaatgatggagcccaagatggcggttatgatcatg 364
                ||||| || ||||| || |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 32378269 cttccaaggttgatttcttccttgagaatgatggagcccatgatggcggtgatgatcatg 32378328

                                                               
Query: 365      cagagcgggttgaatgccgtgacaaacaccggccccctttgcttcga 411
                ||||||||||||||||| || || ||||| || ||||| ||| ||||
Sbjct: 32378329 cagagcgggttgaatgctgtcacgaacactgggcccctctgcctcga 32378375



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 242    tccttgctcttgccccagatgagaaagtagaggcctccaa 281
              ||||||||||| ||||||| |||||  |||||||||||||
Sbjct: 176075 tccttgctcttaccccagaggagaagatagaggcctccaa 176114
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>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1767_D02
          Length = 139145

 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 305   cttccgagattgatctcctccttgagaatgatggagcccaagatggcggttatgatcatg 364
             ||||| || ||||| || |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 39782 cttccaaggttgatttcttccttgagaatgatggagcccatgatggcggtgatgatcatg 39841

                                                            
Query: 365   cagagcgggttgaatgccgtgacaaacaccggccccctttgcttcga 411
             ||||||||||||||||| || || ||||| || ||||| ||| ||||
Sbjct: 39842 cagagcgggttgaatgctgtcacgaacactgggcccctctgcctcga 39888
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                           
Query: 305     cttccgagattgatctcctccttgagaatgatggagcccaagatggcggttatgatcatg 364
               ||||| ||| ||||||| || ||||||||| |||||||||||| |||||| |||||||||
Sbjct: 5627226 cttccaagagtgatctcttctttgagaatggtggagcccaagacggcggtgatgatcatg 5627167

                                                  
Query: 365     cagagcgggttgaatgccgtgacaaacaccggccc 399
               |||||||| | ||| |||||||| |||||||||||
Sbjct: 5627166 cagagcggctggaacgccgtgacgaacaccggccc 5627132
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>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021C04
          Length = 162115

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 305   cttccgagattgatctcctccttgagaatgatggagcccaagatggcggttatgatcatg 364
             ||||| ||| ||||||| || ||||||||| |||||||||||| |||||| |||||||||
Sbjct: 19373 cttccaagagtgatctcttctttgagaatggtggagcccaagacggcggtgatgatcatg 19314

                                                
Query: 365   cagagcgggttgaatgccgtgacaaacaccggccc 399
             |||||||| | ||| |||||||| |||||||||||
Sbjct: 19313 cagagcggctggaacgccgtgacgaacaccggccc 19279
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>ref|NM_195136.1| Oryza sativa (japonica cultivar-group) putative nodulin protein
           (OSJNBa0051J07.8), mRNA
          Length = 300

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                       
Query: 284 atgatcacagcaccaatcacacttccgagattgatctcctccttgagaatgatggagccc 343
           |||||||| || || ||||||||||| ||| |||| || ||  |||||||  ||||| ||
Sbjct: 266 atgatcaccgcgccgatcacacttccaagagtgatatcttctctgagaattgtggagtcc 207

                                                                   
Query: 344 aagatggcggttatgatcatgcagagcgggttgaatgccgtgacaaacaccggccc 399
           |||| || ||| ||||||||||| ||||| | ||| |||| ||| |||||||||||
Sbjct: 206 aagacggaggtgatgatcatgcaaagcggctggaacgccgagacgaacaccggccc 151
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>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence
          Length = 148301

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                         
Query: 327   tgagaatgatggagcccaagatggcggttatgatcatgcagagcgggttgaatgccgtga 386
             |||||||  ||||| |||||| || ||| ||||||||||| ||||| | ||| |||| ||
Sbjct: 45365 tgagaattgtggagtccaagacggaggtgatgatcatgcaaagcggctggaacgccgaga 45306

                          
Query: 387   caaacaccggccc 399
             | |||||||||||
Sbjct: 45305 cgaacaccggccc 45293
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                           
Query: 327     tgagaatgatggagcccaagatggcggttatgatcatgcagagcgggttgaatgccgtga 386
               |||||||  ||||| |||||| || ||| ||||||||||| ||||| | ||| |||| ||
Sbjct: 4898444 tgagaattgtggagtccaagacggaggtgatgatcatgcaaagcggctggaacgccgaga 4898385

                            
Query: 387     caaacaccggccc 399
               | |||||||||||
Sbjct: 4898384 cgaacaccggccc 4898372
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                           
Query: 327     tgagaatgatggagcccaagatggcggttatgatcatgcagagcgggttgaatgccgtga 386
               |||||||  ||||| |||||| || ||| ||||||||||| ||||| | ||| |||| ||
Sbjct: 4899231 tgagaattgtggagtccaagacggaggtgatgatcatgcaaagcggctggaacgccgaga 4899172

                            
Query: 387     caaacaccggccc 399
               | |||||||||||
Sbjct: 4899171 cgaacaccggccc 4899159
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>ref|XM_463798.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1473

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 242  tccttgctcttgccccagatgagaaagtagaggcctccaa 281
            ||||||||||| ||||||| |||||  |||||||||||||
Sbjct: 1216 tccttgctcttaccccagaggagaagatagaggcctccaa 1177
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1435_F07
          Length = 139041

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 242    tccttgctcttgccccagatgagaaagtagaggcctccaa 281
              ||||||||||| ||||||| |||||  |||||||||||||
Sbjct: 125102 tccttgctcttaccccagaggagaagatagaggcctccaa 125141
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>dbj|AK070945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072N08, full
            insert sequence
          Length = 1472

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 242  tccttgctcttgccccagatgagaaagtagaggcctccaa 281
            ||||||||||| ||||||| |||||  |||||||||||||
Sbjct: 1215 tccttgctcttaccccagaggagaagatagaggcctccaa 1176
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>gb|AY598782.1| Simian adenovirus 3 strain ATCC VR-1449, complete genome
          Length = 34246

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 211   cttgctgctgccgccggctttgctga 236
             |||||||||||| |||||||||||||
Sbjct: 25288 cttgctgctgcccccggctttgctga 25263
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>ref|NM_113724.1| Arabidopsis thaliana unknown protein AT3G28060 mRNA, complete cds
          Length = 648

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 294 caccaatcacacttccgagat 314
           |||||||||||||||||||||
Sbjct: 535 caccaatcacacttccgagat 515
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>ref|NM_125653.3| Arabidopsis thaliana VEX1 AT5G62580 (VEX1) mRNA, complete cds
          Length = 2262

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 291 cagcaccaatcacacttccga 311
           |||||||||||||||||||||
Sbjct: 754 cagcaccaatcacacttccga 734
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>gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotein M, DNA replication
              protein, glycoprotein, DNA replication protein, FLICE
              inhibitory protein and v-cyclin genes, complete cds, and
              tegument protein gene, partial cds
          Length = 133661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tgcttgctgctgacgctggcg 169
              |||||||||||||||||||||
Sbjct: 116881 tgcttgctgctgacgctggcg 116861
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>gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome
          Length = 137969

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tgcttgctgctgacgctggcg 169
              |||||||||||||||||||||
Sbjct: 116683 tgcttgctgctgacgctggcg 116663
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>gb|BT010752.1| Arabidopsis thaliana At5g62580 gene, complete cds
          Length = 1848

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 291 cagcaccaatcacacttccga 311
           |||||||||||||||||||||
Sbjct: 607 cagcaccaatcacacttccga 587
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>emb|BX649363.11| Zebrafish DNA sequence from clone CH211-13C3 in linkage group 21,
              complete sequence
          Length = 196451

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     atatagacagacggatcgatg 35
              |||||||||||||||||||||
Sbjct: 123607 atatagacagacggatcgatg 123587
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>gb|AC046168.12| Homo sapiens chromosome 15, clone RP11-307C19, complete sequence
          Length = 180484

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    cagatgagaaagtagaggcct 277
              |||||||||||||||||||||
Sbjct: 112553 cagatgagaaagtagaggcct 112533
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>gb|AY069877.1| Arabidopsis thaliana AT5g62580/K19B1_19 mRNA, complete cds
          Length = 2135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 291 cagcaccaatcacacttccga 311
           |||||||||||||||||||||
Sbjct: 754 cagcaccaatcacacttccga 734
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>gb|AE004537.1| Pseudomonas aeruginosa PAO1, section 98 of 529 of the complete genome
          Length = 13946

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 213   tgctgctgccgccggctttgctgatctcg 241
             |||||||||||| ||| ||||||||||||
Sbjct: 10489 tgctgctgccgctggcgttgctgatctcg 10517
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>dbj|AB015469.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19B1
          Length = 69927

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   cagcaccaatcacacttccga 311
             |||||||||||||||||||||
Sbjct: 60330 cagcaccaatcacacttccga 60310
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>gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus long unique region, 80 putative
              ORF's and kaposin gene, complete cds
          Length = 137508

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tgcttgctgctgacgctggcg 169
              |||||||||||||||||||||
Sbjct: 116577 tgcttgctgctgacgctggcg 116557
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
              sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    agatggcggttatgatcatg 364
              ||||||||||||||||||||
Sbjct: 299506 agatggcggttatgatcatg 299487
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>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 203    ccggcgcccttgctgctgccgccg 226
              |||||||| |||||||||||||||
Sbjct: 182596 ccggcgccgttgctgctgccgccg 182573
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>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence
          Length = 159624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tattggagtatagctactcc 63
              ||||||||||||||||||||
Sbjct: 157042 tattggagtatagctactcc 157023
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>ref|XM_570690.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND00980) partial mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 agatggcggttatgatcatg 364
           ||||||||||||||||||||
Sbjct: 356 agatggcggttatgatcatg 375
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>gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome 3, complete sequence
          Length = 243378

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    gatctcgtccttgctcttgc 254
              ||||||||||||||||||||
Sbjct: 136518 gatctcgtccttgctcttgc 136537
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>emb|BX088550.5| Human DNA sequence from clone RP13-444H2 on chromosome 13 Contains the
             5' end of a novel gene and two CpG islands, complete
             sequence
          Length = 46511

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tctccacgccaatgacatgg 124
             ||||||||||||||||||||
Sbjct: 21029 tctccacgccaatgacatgg 21048
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>emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chromosome 13q32.2-33.3
            Contains 2 novel genes, a pseudogene similar to part of
            TPTE and PTEN homologous inositol lipid phosphatase
            (TPIP), a pseudogene similar to part of mitochondrial
            ribosomal protein S31 (MRPS31), the gene for a novel
            protein similar to heterogeneous nuclear
            ribonucleoprotein A1 (HNRPA1) and 3 CpG islands, complete
            sequence
          Length = 163390

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  tctccacgccaatgacatgg 124
            ||||||||||||||||||||
Sbjct: 3148 tctccacgccaatgacatgg 3129
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>gb|AC098477.2| Homo sapiens chromosome 3 clone RP11-733H11, complete sequence
          Length = 198468

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ttataccaggaaaaatatag 20
              ||||||||||||||||||||
Sbjct: 178315 ttataccaggaaaaatatag 178296
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>gb|AC108077.3| Homo sapiens BAC clone RP11-739G21 from 4, complete sequence
          Length = 106983

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   cagatgagaaagtagaggcctcca 280
             |||||||||||| |||||||||||
Sbjct: 25457 cagatgagaaagcagaggcctcca 25480
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>ref|XM_690060.1| PREDICTED: Danio rerio similar to Crebbp protein (LOC566774), mRNA
          Length = 4007

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  tgcttgctgctgacgctggcgtgg 172
            |||| |||||||||||||||||||
Sbjct: 3132 tgctggctgctgacgctggcgtgg 3109
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>gb|AC000159.6| Homo sapiens Chromosome 11q13 BAC Clone b79g17, complete sequence
          Length = 108523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   cagatgagaaagtagaggcc 276
             ||||||||||||||||||||
Sbjct: 43555 cagatgagaaagtagaggcc 43536
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>gb|AC096731.3| Homo sapiens BAC clone RP11-72C15 from 4, complete sequence
          Length = 91203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   agatggcggttatgatcatgcaga 368
             ||||||||||||||||||| ||||
Sbjct: 41928 agatggcggttatgatcattcaga 41951
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>gb|AC010975.9| Homo sapiens BAC clone RP11-191H23 from 2, complete sequence
          Length = 171249

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ccaggaaaaatatagacaga 25
             ||||||||||||||||||||
Sbjct: 90995 ccaggaaaaatatagacaga 91014
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>gb|AC100823.3| Homo sapiens chromosome 8, clone RP11-956J14, complete sequence
          Length = 191937

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   ttggtcatggaggttaaggg 195
             ||||||||||||||||||||
Sbjct: 15844 ttggtcatggaggttaaggg 15863
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>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22,
             complete sequence
          Length = 219929

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   tgcttgctgctgacgctggcgtgg 172
             |||| |||||||||||||||||||
Sbjct: 42942 tgctggctgctgacgctggcgtgg 42919
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>dbj|AP001187.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-665N17, complete
              sequence
          Length = 171793

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    cagatgagaaagtagaggcc 276
              ||||||||||||||||||||
Sbjct: 134937 cagatgagaaagtagaggcc 134956


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,982,561
Number of Sequences: 3902068
Number of extensions: 2982561
Number of successful extensions: 57526
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57300
Number of HSP's gapped (non-prelim): 226
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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