Clone Name | rbart43h07 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence Length = 1550 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||||| | || | || |||||||| |||||||||||||| ||||| Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctttccgaa 1224
>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP translocase) Length = 1511 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||||| | || | || |||||||| |||||||||||||| ||||| Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctttccgaa 1209
>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator Length = 2098 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||||| | || | || |||||||| |||||||||||||| ||||| Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctttccgaa 1877
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1577 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1578 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1619 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1341 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1289 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
>emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp) Length = 1494 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 340 gcaccgcctgagccgtacttcttgccgaa 368 |||||||| |||||||||||||||||||| Sbjct: 1473 gcaccgccggagccgtacttcttgccgaa 1445
>emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp) Length = 1549 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 340 gcaccgcctgagccgtacttcttgccgaa 368 |||||||| |||||||||||||||||||| Sbjct: 1528 gcaccgccggagccgtacttcttgccgaa 1500
>emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier Length = 1035 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 340 gcaccgcctgagccgtacttcttgccgaa 368 |||||||| |||||||||||||||||||| Sbjct: 1028 gcaccgccggagccgtacttcttgccgaa 1000
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 29843335 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 29843283 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 99680 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 99628 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 248 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full insert sequence Length = 1578 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full insert sequence Length = 1577 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full insert sequence Length = 1618 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1340 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1288 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator, complete cds Length = 1564 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 311 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 362 ||||||||||||||||| || || | ||||||||||| |||||||||||||| Sbjct: 1287 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1235 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 aactcaaactcaaccctatgatagtaaa 142 |||||||||||||||||||||| ||||| Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
>gb|BT016715.1| Zea mays clone Contig548 mRNA sequence Length = 1584 Score = 48.1 bits (24), Expect = 0.020 Identities = 51/60 (85%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||| | | || | || |||||||| |||||||||||||| ||||| Sbjct: 1276 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctttccgaa 1217
>emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide translocator (also called ADP/ATP translocase) Length = 1579 Score = 48.1 bits (24), Expect = 0.020 Identities = 51/60 (85%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||| | | || | || |||||||| |||||||||||||| ||||| Sbjct: 1275 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctttccgaa 1216
>gb|AY109420.1| Zea mays CL2269_1 mRNA sequence Length = 1883 Score = 48.1 bits (24), Expect = 0.020 Identities = 51/60 (85%) Strand = Plus / Minus Query: 309 ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttcttgccgaa 368 ||||||||||||||||| | | || | || |||||||| |||||||||||||| ||||| Sbjct: 1292 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctttccgaa 1233
>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence Length = 138057 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 301 acagacttctcttgttcgtcatcat 325 ||||||||||||||||||| ||||| Sbjct: 10958 acagacttctcttgttcgttatcat 10982
>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence Length = 165247 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 acagacttctcttgttcgtcatcat 325 ||||||||||||||||||| ||||| Sbjct: 22002 acagacttctcttgttcgttatcat 21978
>emb|X15711.1|ZMANTG1 Maize gene for mitochondrial adenine nucleotide translocator (ANT-G1) Length = 2056 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 gcaccgcctgagccgtacttcttgccgaa 368 |||||||| |||||||||||||| ||||| Sbjct: 1875 gcaccgccggagccgtacttctttccgaa 1847
>emb|X02842.1|ZMANT1 Zea mays mRNA for adenine nucleotide translocator (ATP/ADP translocator) Length = 1136 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 gcaccgcctgagccgtacttcttgccgaa 368 |||||||| |||||||||||||| ||||| Sbjct: 955 gcaccgccggagccgtacttctttccgaa 927
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12, ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene, tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19, ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An d48 Length = 82868 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 ctggagttcgatgcctccacc 199 ||||||||||||||||||||| Sbjct: 45484 ctggagttcgatgcctccacc 45504
>ref|NM_111692.2| Arabidopsis thaliana AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding AT3G08580 (AAC1) transcript variant AT3G08580.1 mRNA, complete cds Length = 1457 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1192 taggcacctcctgatccgtacttcttaccgaa 1161
>ref|NM_180210.1| Arabidopsis thaliana AAC1 (ADP/ATP CARRIER 1); binding AT3G08580 (AAC1) transcript variant AT3G08580.2 mRNA, complete cds Length = 1572 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1307 taggcacctcctgatccgtacttcttaccgaa 1276
>gb|BT000381.1| Arabidopsis thaliana adenylate translocator (At3g08580) mRNA, complete cds Length = 1183 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1145 taggcacctcctgatccgtacttcttaccgaa 1114
>gb|AY074529.1| Arabidopsis thaliana putative adenylate translocator protein (At3g08580) mRNA, complete cds Length = 1177 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1145 taggcacctcctgatccgtacttcttaccgaa 1114
>emb|X65549.1|ATAT A.thaliana ANT1 mRNA for adenylate translocator Length = 1393 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1139 taggcacctcctgatccgtacttcttaccgaa 1108
>gb|AY034933.1| Arabidopsis thaliana putative adenylate translocator protein (At3g08580) mRNA, complete cds Length = 1450 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1258 taggcacctcctgatccgtacttcttaccgaa 1227
>gb|AY054248.1| Arabidopsis thaliana AT3g08580/F17O14_5 mRNA, complete cds Length = 1492 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1255 taggcacctcctgatccgtacttcttaccgaa 1224
>dbj|AK220978.1| Arabidopsis thaliana mRNA for adenylate translocator, partial cds, clone: RAFL22-57-O21 Length = 378 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 194 taggcacctcctgatccgtacttcttaccgaa 163
>gb|AY042814.1| Arabidopsis thaliana adenylate translocator (F17O14.5) mRNA, complete cds Length = 1481 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1266 taggcacctcctgatccgtacttcttaccgaa 1235
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence, complete sequence Length = 90721 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 16630 taggcacctcctgatccgtacttcttaccgaa 16661
>gb|AY089128.1| Arabidopsis thaliana clone 36818 mRNA, complete sequence Length = 1390 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1191 taggcacctcctgatccgtacttcttaccgaa 1160
>gb|BT002387.1| Arabidopsis thaliana adenylate translocator (At3g08580) mRNA, complete cds Length = 1476 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 taggcaccgcctgagccgtacttcttgccgaa 368 |||||||| ||||| ||||||||||| ||||| Sbjct: 1258 taggcacctcctgatccgtacttcttaccgaa 1227
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 gagccgtacttcttgccgaaaaag 372 ||||||||||||| |||||||||| Sbjct: 2508463 gagccgtacttctcgccgaaaaag 2508486
>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence Length = 193811 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 atgatagtaaatgttttgag 151 |||||||||||||||||||| Sbjct: 152272 atgatagtaaatgttttgag 152253
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 catactcgaactcaaactcaaccc 130 ||||||| |||||||||||||||| Sbjct: 48909 catactcaaactcaaactcaaccc 48932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,138,302 Number of Sequences: 3902068 Number of extensions: 3138302 Number of successful extensions: 63439 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63340 Number of HSP's gapped (non-prelim): 83 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)