ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 42 0.001
2SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase rec... 31 2.1
3LARG2_CHICK (Q66PG4) Glycosyltransferase-like protein LARGE2 (EC... 30 4.7
4RK2_CYAME (Q85FW0) Chloroplast 50S ribosomal protein L2 29 6.1
5PPQ1_YEAST (P32945) Serine/threonine-protein phosphatase PPQ (EC... 29 6.1
6CX32_ARATH (P27450) Probable serine/threonine-protein kinase Cx3... 29 7.9
7SIRK_ARATH (O64483) Senescence-induced receptor-like serine/thre... 29 7.9

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = -3

Query: 497 VLVGLACTQTKPEQRPVMSEVVEMLKGES-AEKFSVLENDDLFK 369
           + V L CTQ+ P +RP MSEVV ML+G+  AE++   + +++F+
Sbjct: 539 IQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFR 582



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>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 497 VLVGLACTQTKPEQRPVMSEVVEMLKGESAE 405
           + +GL C Q   E RP MS VV M   E+ E
Sbjct: 782 IQIGLLCVQELAEHRPAMSSVVWMFGSEATE 812



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>LARG2_CHICK (Q66PG4) Glycosyltransferase-like protein LARGE2 (EC 2.4.-.-)|
           (Glycosyltransferase-like 1B)
          Length = 739

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 195 SWEVWFVSVCAYGCFLLLAGCLGHLPVQRCSR 100
           SW   FV    YG FLLL  CLG  P +   R
Sbjct: 23  SWLYLFVGSLEYGRFLLLPPCLGEQPSRDVER 54



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>RK2_CYAME (Q85FW0) Chloroplast 50S ribosomal protein L2|
          Length = 245

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 375 VQASTDDQLRPGHLWPL 325
           V+A  D +L+PGH+WPL
Sbjct: 87  VKAGVDAELQPGHVWPL 103



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>PPQ1_YEAST (P32945) Serine/threonine-protein phosphatase PPQ (EC 3.1.3.16)|
          Length = 549

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 405 EVLRLGE*RSVQASTDDQLRPGHLWPLQLGRYHRRE 298
           ++L++GE R +  ++  +  P H W +QL  YH RE
Sbjct: 246 KLLQVGESREITKTSKKKNFPFHSWEIQLICYHARE 281



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>CX32_ARATH (P27450) Probable serine/threonine-protein kinase Cx32, chloroplast|
           precursor (EC 2.7.11.1)
          Length = 419

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 491 VGLACTQTKPEQRPVMSEVVEMLKGESAEKFSVLENDDLFKPQQTTSS 348
           + L+C +  P+ RP M EVVE+L  E  +  +V+ N    K     SS
Sbjct: 343 ITLSCIEPDPKNRPHMKEVVEVL--EHIQGLNVVPNRSSTKQAVANSS 388



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>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein|
           kinase precursor (FLG22-induced receptor-like kinase 1)
          Length = 876

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 491 VGLACTQTKPEQRPVMSEVVEMLK 420
           + LACT+    QRP MS+VV  LK
Sbjct: 820 IALACTEHTSAQRPTMSQVVMELK 843


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,499,190
Number of Sequences: 219361
Number of extensions: 1334274
Number of successful extensions: 4002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3998
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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