Clone Name | rbart43h05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1625 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 1225 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 1166 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 1165 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 1106 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 1105 cccaacaagcacca 1092
>ref|XM_506736.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_B01.27 mRNA Length = 1650 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 1250 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 1191 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 1190 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 1131 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 1130 cccaacaagcacca 1117
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 4808646 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 4808705 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 4808706 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 4808765 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 4808766 cccaacaagcacca 4808779
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 89236 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 89295 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 89296 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 89355 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 89356 cccaacaagcacca 89369
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 50805 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 50864 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 50865 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 50924 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 50925 cccaacaagcacca 50938
>dbj|AK099031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127K13, full insert sequence Length = 1624 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 1224 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 1165 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 1164 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 1105 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 1104 cccaacaagcacca 1091
>dbj|AK068056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132O11, full insert sequence Length = 1651 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 366 aggcttgaacagatcgtcattctccaagacggagaacttctcggcagattcccccttgag 425 ||||||||||| || |||||||||||| ||| | |||||| |||||||| |||||||| Sbjct: 1251 aggcttgaacatctcatcattctccaagttggaaagcttctcagcagattctcccttgag 1192 Query: 426 catctccacaacctcagacatcaccggcctctgttctggcttggtctgagtgcaagcaag 485 || ||| || || |||||||| | |||||||||||| | ||| ||||| |||| ||||| Sbjct: 1191 cagctcaacgacttcagacattatcggcctctgttcctgtttgttctgactgcatgcaag 1132 Query: 486 cccgacgagcacca 499 ||| || ||||||| Sbjct: 1131 cccaacaagcacca 1118
>emb|AL137179.14| Human DNA sequence from clone RP11-82M9 on chromosome 6 Contains part of the GMDS gene for GDP-mannose 4 6-dehydratase, complete sequence Length = 153053 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaaac 181 ||||||||||||||||||||||| Sbjct: 139087 catacgcacacacagacacaaac 139109
>gb|AY805367.1| Bubalus bubalis clone BBMS231 microsatellite sequence Length = 821 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 accatacgcacacacagacaca 178 |||||||||||||||||||||| Sbjct: 763 accatacgcacacacagacaca 784
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 agacggagaacttctcggcaga 413 |||||||||||||||||||||| Sbjct: 1158392 agacggagaacttctcggcaga 1158413
>ref|XM_572918.1| Cryptococcus neoformans var. neoformans JEC21 40S ribosomal protein S0 (CNI04340) partial mRNA Length = 1619 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 agacggagaacttctcggcaga 413 |||||||||||||||||||||| Sbjct: 661 agacggagaacttctcggcaga 640
>gb|AC110517.9| Mus musculus chromosome 17, clone RP23-13F15, complete sequence Length = 218657 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaaa 180 |||||||||||||||||||||| Sbjct: 126609 catacgcacacacagacacaaa 126630
>emb|Z93016.2|HS211D12 Human DNA sequence from clone RP1-211D12 on chromosome 20q12-13.2 Contains the 3' end of the STK4 gene encoding serine/threonine kinase 4, the KCNS1 gene for potassium voltage-gated channel, delayed-rectifier (subfamily S, member 1), the WFDC5 gene for WAP four-disulfide core domain 5, the WFDC12 gene for WAP four-disulfide core domain 12 and a CpG island, complete sequence Length = 126270 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccacac 186 |||||||||||||||||||||| Sbjct: 16942 cacacacagacacaaaccacac 16921
>emb|AL109839.11|HSJ1069P2 Human DNA sequence from clone RP5-1069P2 on chromosome 20 Contains the the 3' end of the C20orf119 gene for chromosome 20 open reading frame 119, the TOMM34 gene for translocase of outer mitochondrial membrane 34, a novel gene, the 5' end of the STK4 gene for serine/threonine kinase 4 and a CpG island, complete sequence Length = 109575 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 165 cacacacagacacaaaccacac 186 |||||||||||||||||||||| Sbjct: 17355 cacacacagacacaaaccacac 17376
>gb|DP000037.1| Pan troglodytes target 106 genomic scaffold Length = 302717 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccacac 186 |||||||||||||||||||||| Sbjct: 48856 cacacacagacacaaaccacac 48835
>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold Length = 355851 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccacac 186 |||||||||||||||||||||| Sbjct: 69401 cacacacagacacaaaccacac 69380
>gb|AC119998.13| Mus musculus chromosome 17, clone RP24-128A6, complete sequence Length = 172124 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 accatacgcacacacagacaca 178 |||||||||||||||||||||| Sbjct: 60439 accatacgcacacacagacaca 60460
>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence Length = 206043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 cacacttcccaggaagggata 202 ||||||||||||||||||||| Sbjct: 64468 cacacttcccaggaagggata 64488
>emb|BX927336.18| Zebrafish DNA sequence from clone CH211-215P11 in linkage group 5, complete sequence Length = 200686 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaa 179 ||||||||||||||||||||| Sbjct: 48422 catacgcacacacagacacaa 48442
>gb|AC109212.15| Mus musculus chromosome 9, clone RP23-329B5, complete sequence Length = 190469 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 159 catacgcacacacagacacaaaccacact 187 ||||| |||||||||||||| |||||||| Sbjct: 3685 catacacacacacagacacacaccacact 3657
>gb|AC124480.5| Mus musculus BAC clone RP24-117B21 from chromosome 5, complete sequence Length = 189616 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 acgcacacacagacacaaaccacac 186 ||||||||||| ||||||||||||| Sbjct: 99395 acgcacacacacacacaaaccacac 99371
>gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186298 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 acgcacacacagacacaaaccacac 186 ||||||||||||||||| ||||||| Sbjct: 158757 acgcacacacagacacacaccacac 158733
>gb|AC159280.2| Mus musculus BAC clone RP23-347A2 from chromosome 13, complete sequence Length = 200540 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 acgcacacacagacacaaaccacac 186 ||||||||||| ||||||||||||| Sbjct: 106077 acgcacacacacacacaaaccacac 106053
>emb|BX248229.14| Zebrafish DNA sequence from clone CH211-126P4 in linkage group 2, complete sequence Length = 180233 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 cacacacagacacaaaccaca 185 ||||||||||||||||||||| Sbjct: 80612 cacacacagacacaaaccaca 80632
>gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, region 94B-94C, BAC clone BACR02L12, complete sequence Length = 178931 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 acaaccatacgcacacacagacaca 178 ||||||||||||||||||| ||||| Sbjct: 43369 acaaccatacgcacacacacacaca 43345
>gb|AC151713.4| Mus musculus BAC clone RP24-100K9 from chromosome 8, complete sequence Length = 199295 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gcacacacagacacaaaccacactt 188 ||||||||||||||| ||||||||| Sbjct: 176155 gcacacacagacacacaccacactt 176131
>emb|BX088547.12| Zebrafish DNA sequence from clone DKEY-238O14, complete sequence Length = 256446 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaa 179 ||||||||||||||||||||| Sbjct: 97881 catacgcacacacagacacaa 97901
>emb|BX248403.6| Zebrafish DNA sequence from clone DKEY-30H14 in linkage group 20, complete sequence Length = 154669 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 acagacacaaaccacacttcc 190 ||||||||||||||||||||| Sbjct: 110509 acagacacaaaccacacttcc 110529
>gb|AC117831.6| Mus musculus chromosome 15, clone RP24-106E17, complete sequence Length = 173772 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 cacacacagacacaaaccaca 185 ||||||||||||||||||||| Sbjct: 139038 cacacacagacacaaaccaca 139058
>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the complete sequence Length = 224856 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 acaaccatacgcacacacagacaca 178 ||||||||||||||||||| ||||| Sbjct: 176879 acaaccatacgcacacacacacaca 176855
>gb|AC107808.20| Mus musculus chromosome 9, clone RP23-61B14, complete sequence Length = 188589 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaaaccacact 187 ||||| |||||||||||||| |||||||| Sbjct: 8276 catacacacacacagacacacaccacact 8304
>gb|AC105989.14| Mus musculus chromosome 8, clone RP24-95N3, complete sequence Length = 194387 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 gcacacacagacacaaaccacactt 188 ||||||||||||||| ||||||||| Sbjct: 141382 gcacacacagacacacaccacactt 141406
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence Length = 182415 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccaca 185 ||||||||||||||||||||| Sbjct: 162766 cacacacagacacaaaccaca 162746
>ref|NM_124889.3| Arabidopsis thaliana acyltransferase/ dihydrolipoyllysine-residue succinyltransferase AT5G55070 mRNA, complete cds Length = 1945 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 acaacaagaaacaaccatac 163 |||||||||||||||||||| Sbjct: 1885 acaacaagaaacaaccatac 1866
>gb|AC160121.2| Mus musculus BAC clone RP23-402P14 from chromosome 13, complete sequence Length = 183152 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tacacacacatttgtgcatc 220 |||||||||||||||||||| Sbjct: 147475 tacacacacatttgtgcatc 147456
>gb|AC139231.11| Mus musculus chromosome 1, clone RP24-87I22, complete sequence Length = 191438 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 159 catacgcacacacagacacaaaccacac 186 ||||| |||||||| ||||||||||||| Sbjct: 82854 catacacacacacacacacaaaccacac 82827
>gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, complete sequence Length = 215745 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 164068 catacgcacacacagacaca 164049
>gb|AC131329.13| Mus musculus chromosome 13, clone RP23-474B11, complete sequence Length = 172830 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 143 aacaacaagaaacaaccatacgcacacacagacaca 178 |||||||||||||| ||||| |||||||| ||||| Sbjct: 172059 aacaacaagaaacacacatacacacacacacacaca 172094
>gb|AC102689.10| Mus musculus chromosome 12, clone RP24-142L2, complete sequence Length = 203221 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 acgcacacacagacacaaac 181 |||||||||||||||||||| Sbjct: 116748 acgcacacacagacacaaac 116729
>emb|BX927376.15| Zebrafish DNA sequence from clone CH211-227M13 in linkage group 22, complete sequence Length = 158803 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 151 gaaacaaccatacgcacacacagacaca 178 |||||| |||||| |||||||||||||| Sbjct: 155586 gaaacatccatacacacacacagacaca 155613
>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence Length = 206926 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 atttgtgcatcatcacacta 229 |||||||||||||||||||| Sbjct: 102679 atttgtgcatcatcacacta 102698
>emb|CR457445.15| Zebrafish DNA sequence from clone CH211-204C5 in linkage group 8, complete sequence Length = 155181 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 116814 catacgcacacacagacaca 116795
>gb|AC102426.6| Mus musculus chromosome 1, clone RP24-88A10, complete sequence Length = 192016 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 159 catacgcacacacagacacaaaccacac 186 ||||| |||||||| ||||||||||||| Sbjct: 94136 catacacacacacacacacaaaccacac 94109
>emb|Z97355.1|HSU230G7 Human DNA sequence from clone LL0XNC01-230G7 on chromosome X, complete sequence Length = 30946 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 acgcacacacagacacaaac 181 |||||||||||||||||||| Sbjct: 20929 acgcacacacagacacaaac 20948
>emb|Z94722.1|HS60G11 Human DNA sequence from clone RP1-60G11 on chromosome Xq21.1-21.3, complete sequence Length = 106839 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 84030 catacgcacacacagacaca 84011
>emb|AL603750.7| Human DNA sequence from clone RP11-33E12 on chromosome 1 Contains a novel gene (FLJ13815) and a CpG island, complete sequence Length = 63692 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaaaccacac 186 ||||| ||||||||||||||||| |||| Sbjct: 26107 catacacacacacagacacaaacaacac 26134
>emb|AL591605.7| Human DNA sequence from clone RP11-476G6 on chromosome 6, complete sequence Length = 137494 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tctgagtgcaagcaagcccg 489 |||||||||||||||||||| Sbjct: 35221 tctgagtgcaagcaagcccg 35202
>emb|AL121771.17|HSJ548G19 Human DNA sequence from clone RP4-548G19 on chromosome 20 Contains the 5' end of the ZFP64 gene for zinc finger protein 64 homolog (mouse) and a CpG island, complete sequence Length = 61579 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 30825 catacgcacacacagacaca 30806
>emb|AL035419.12|HS1100H13 Human DNA sequence from clone RP5-1100H13 on chromosome 20q11.2 Contains the 3' end of the gene for a novel protein (KIAA1219), a novel gene, a HSPC037 pseudogene, the C20orf95 gene for a novel RhoGAP domain-containing protein and two CpG islands, complete sequence Length = 116792 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 catacgcacacacagacacaaacc 182 ||||| |||||||||||||||||| Sbjct: 24685 catacacacacacagacacaaacc 24708
>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence Length = 195714 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 143 aacaacaagaaacaaccatacgcacacacagacaca 178 |||||||||||||| ||||| |||||||| ||||| Sbjct: 162694 aacaacaagaaacacacatacacacacacacacaca 162659
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cagtccaataagaatcttac 48 |||||||||||||||||||| Sbjct: 95088 cagtccaataagaatcttac 95107
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cagtccaataagaatcttac 48 |||||||||||||||||||| Sbjct: 73996 cagtccaataagaatcttac 74015
>emb|CR376772.5| Zebrafish DNA sequence from clone CH211-244C20 in linkage group 6, complete sequence Length = 165829 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 gaaacaaccatacgcacacacagacaca 178 |||||| ||||||||||||||| ||||| Sbjct: 161855 gaaacacccatacgcacacacacacaca 161828
>gb|AC121160.3| Homo sapiens BAC clone RP11-730F8 from 4, complete sequence Length = 110227 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 77161 catacgcacacacagacaca 77180
>gb|AC125287.1| Homo sapiens chromosome 4 clone RP11-730F8, complete sequence Length = 110227 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 77161 catacgcacacacagacaca 77180
>gb|AC010024.5| Drosophila melanogaster 3L BAC RP98-26E20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 85788 catacgcacacacagacaca 85807
>gb|AC091589.8| Homo sapiens chromosome 18, clone RP11-635B11, complete sequence Length = 177680 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccacactt 188 |||||||| ||||||||||||||| Sbjct: 105197 cacacacacacacaaaccacactt 105174
>gb|AC093898.3| Homo sapiens BAC clone RP11-724A24 from 4, complete sequence Length = 183273 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 130490 catacgcacacacagacaca 130471
>gb|AC069407.2| Drosophila melanogaster 3L BAC RP98-30I5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 183714 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 155126 catacgcacacacagacaca 155107
>gb|AC010647.5| Homo sapiens chromosome 19 clone LLNLR-279F8, complete sequence Length = 40102 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 9976 catacgcacacacagacaca 9995
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgagctgcaggggccagag 336 |||||||||||||||||||| Sbjct: 18949140 ccgagctgcaggggccagag 18949159
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 atacacacacatttgtgcat 219 |||||||||||||||||||| Sbjct: 40416849 atacacacacatttgtgcat 40416830 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gccctggacggagctggtcg 358 |||||||||||||||||||| Sbjct: 35401675 gccctggacggagctggtcg 35401656
>gb|AC153559.4| Mus musculus 10 BAC RP23-86P1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185708 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 accatacgcacacacagacacaaa 180 |||||||||||||||| ||||||| Sbjct: 33107 accatacgcacacacatacacaaa 33130
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1455F06 Length = 140848 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 atacacacacatttgtgcat 219 |||||||||||||||||||| Sbjct: 125813 atacacacacatttgtgcat 125794
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 atacacacacatttgtgcat 219 |||||||||||||||||||| Sbjct: 68090 atacacacacatttgtgcat 68071
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gccctggacggagctggtcg 358 |||||||||||||||||||| Sbjct: 25624 gccctggacggagctggtcg 25605
>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete sequence Length = 205757 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 cacacacagacacaaaccacactt 188 |||||||| ||||||||||||||| Sbjct: 133867 cacacacacacacaaaccacactt 133844
>dbj|AB010071.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCO15 Length = 82918 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 acaacaagaaacaaccatac 163 |||||||||||||||||||| Sbjct: 9474 acaacaagaaacaaccatac 9455
>gb|AC154366.2| Mus musculus BAC clone RP24-567I24 from 17, complete sequence Length = 147597 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 ctctgttctggcttggtctgagtg 477 ||||||||||||||| |||||||| Sbjct: 134406 ctctgttctggcttgctctgagtg 134429
>emb|BX936320.11| Zebrafish DNA sequence from clone CH211-112L17 in linkage group 21, complete sequence Length = 114670 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 acgcacacacagacacaaac 181 |||||||||||||||||||| Sbjct: 105578 acgcacacacagacacaaac 105597
>gb|AE003562.3| Drosophila melanogaster chromosome 3L, section 23 of 83 of the complete sequence Length = 255329 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 catacgcacacacagacaca 178 |||||||||||||||||||| Sbjct: 131613 catacgcacacacagacaca 131594
>emb|CR407557.10| Zebrafish DNA sequence from clone DKEYP-66B8 in linkage group 6, complete sequence Length = 119597 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 gaaacaaccatacgcacacacagacaca 178 |||||| ||||||||||||||| ||||| Sbjct: 9521 gaaacacccatacgcacacacacacaca 9494
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgagctgcaggggccagag 336 |||||||||||||||||||| Sbjct: 18875367 ccgagctgcaggggccagag 18875386
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ccgagctgcaggggccagag 336 |||||||||||||||||||| Sbjct: 21239 ccgagctgcaggggccagag 21220
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgagctgcaggggccagag 336 |||||||||||||||||||| Sbjct: 45257 ccgagctgcaggggccagag 45276
>emb|AM114764.1| Platynereis dumerilii partial mRNA for axonemal dynein heavy chain protein (adhc gene) Length = 5268 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgccaacaacaagaaacaac 158 |||||||||||||||||||| Sbjct: 2598 tgccaacaacaagaaacaac 2617
>emb|CR354440.22| Zebrafish DNA sequence from clone DKEYP-100B9 in linkage group 13, complete sequence Length = 155023 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 acgcacacacagacacaaac 181 |||||||||||||||||||| Sbjct: 111780 acgcacacacagacacaaac 111761
>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete sequence Length = 246021 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cgcacacacagacacaaaccacac 186 |||||||||| ||||||||||||| Sbjct: 195303 cgcacacacacacacaaaccacac 195326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,659,160 Number of Sequences: 3902068 Number of extensions: 4659160 Number of successful extensions: 155941 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155605 Number of HSP's gapped (non-prelim): 336 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)