ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (E... 40 0.003
2CYAA_DICDI (Q03100) Adenylate cyclase, aggregation specific (EC ... 32 0.62
3CNG_ICTPU (P55934) Cyclic nucleotide-gated cation channel 30 1.8
4DHPH_BACBA (Q59224) Phenylalanine dehydrogenase (EC 1.4.1.20) (P... 29 4.0
5GPI16_SCHPO (O94380) GPI transamidase component PIG-T homolog pr... 29 4.0
6LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I... 29 5.3
7UHPB_SALTY (P27668) Sensor protein uhpB (EC 2.7.13.3) 28 9.0
8PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate p... 28 9.0
9COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein)... 28 9.0

>GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (EC 2.5.1.18)|
          Length = 231

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = -2

Query: 421 SPEKVYDFIGLLKKRYGIE 365
           SPEKVYDF+G+LKK+YG+E
Sbjct: 213 SPEKVYDFVGVLKKKYGVE 231



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>CYAA_DICDI (Q03100) Adenylate cyclase, aggregation specific (EC 4.6.1.1) (ATP|
           pyrophosphate-lyase) (Adenylyl cyclase)
          Length = 1407

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 79  GIAGGNSVLPPPKTRVDT*HTHRAGEHNTHPHCLTQPYTTNHSHANN 219
           G  GG   + P    +++   +    HN HP+ L+ P+  NH++ N+
Sbjct: 68  GGGGGGGHINPMHLNLNSITNNHNNHHNHHPNTLSTPHNNNHNNNNH 114



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>CNG_ICTPU (P55934) Cyclic nucleotide-gated cation channel|
          Length = 682

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 110 HRRPGLTHDTHIEQEST-TRTHTA*PNHILPTTHTRTIYSTNKE 238
           H   GL  D   E E     THT    H  P THTRT   TN E
Sbjct: 636 HTGLGLLSDNEAEGEHAGVPTHTHADIHAQPETHTRTSAETNSE 679



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>DHPH_BACBA (Q59224) Phenylalanine dehydrogenase (EC 1.4.1.20) (PheDH)|
          Length = 380

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 143 CVCHVSTLVFGGGSTELPPAIPFLYPLRAMNKL 45
           C+  V     GGG + +P A+  LY ++A NK+
Sbjct: 142 CIVGVPEAYGGGGDSSIPTAMGVLYGIKATNKM 174



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>GPI16_SCHPO (O94380) GPI transamidase component PIG-T homolog precursor|
          Length = 545

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +1

Query: 73  RNGIAGGNSVLPPPKTRVDT*HTHRAGEHNTHPHCLTQPYTTNHSHANNLFH**RKKYPN 252
           RNG   G +   PP       + H   E     HCL   Y+T H   ++LFH    K P 
Sbjct: 247 RNGRRKGKTTFQPPSE-----YCH--DEDMDSLHCLMSGYSTEHHTVDDLFH----KVPK 295

Query: 253 ARTAGHPNRSIIFI 294
            R       S +F+
Sbjct: 296 ERCLLSSTFSDVFV 309



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>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T|
          Length = 970

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = +2

Query: 107 PHRRPGLTHDTHIEQESTTRTHTA*PNHILPTTHTRTIYSTNKERNIQTHALQATQIAP* 286
           PH    + H  HI Q  +   H    +    T H   +  T+++ + Q H  Q   + P 
Sbjct: 588 PHTSSTIIHPHHIIQHVSQEPHHQEHHQQHQTIHIEEVPQTSQQHHQQQHHHQLQTVQPT 647

Query: 287 FLSVASFRQAGRPAGLRVHGGPPARLLDAVPL 382
              V S   A     + + G    +L D+ P+
Sbjct: 648 HTQVQSIITAHPGQTINLVGLRNVQLADSKPI 679



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>UHPB_SALTY (P27668) Sensor protein uhpB (EC 2.7.13.3)|
          Length = 500

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 227 WNKLFACEWLVVYGWVRQCGCVLCSPALCVCHVSTLVFGGGSTELPPAIPFLY 69
           W  L   EWL+VY W+ Q         + + H+  L+ G   T LP A+   Y
Sbjct: 60  WPVLLGAEWLLVY-WLAQ--------EVALAHLPLLMIGSVLTLLPVALTSRY 103



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>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 255  THCRPPKSLHNFYL*LPSGRPAGRPACACMAVRRRAYSMPY 377
            +HCRP    H+F+L   +  P G   C CM V ++  S  Y
Sbjct: 1305 SHCRP----HHFHL--SASNPEGCLPCFCMGVTQQCASSSY 1339



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>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 914

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 283 WSDLGGLQCVRLDISFFISGINCSRVS 203
           W++ G L C+  D S+F+ G++ ++V+
Sbjct: 472 WNESGSLVCLATDDSYFVLGVDTAQVA 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,408,865
Number of Sequences: 219361
Number of extensions: 1521928
Number of successful extensions: 3984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3968
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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