ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 42 0.25
2emb|AL138653.1|ATT32A11 Arabidopsis thaliana DNA chromosome 3, B... 42 0.25
3emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chro... 42 0.25
4emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 i... 42 0.25
5gb|AC104131.4| Homo sapiens BAC clone RP11-324H23 from 2, comple... 42 0.25
6gb|AC013473.8| Homo sapiens BAC clone RP11-504G5 from 2, complet... 42 0.25
7gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cance... 42 0.25
8emb|AL162420.13| Human DNA sequence from clone RP11-380P16 on ch... 40 1.0
9emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ... 40 1.0
10emb|AL161507.2|ATCHRIV19 Arabidopsis thaliana DNA chromosome 4, ... 40 1.0
11emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-08... 40 1.0
12gb|AC117806.11| Mus musculus chromosome 15, clone RP24-566D14, c... 40 1.0
13gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map... 40 1.0
14gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 1.0
15dbj|AK049426.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 1.0
16gb|AC100865.5| Homo sapiens chromosome 11, clone RP11-449L13, co... 40 1.0
17gb|AY299292.1| Arabidopsis thaliana clone E6 mRNA sequence 40 1.0
18dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 1.0
19dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 1.0
20dbj|AB028614.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 1.0
21dbj|AP002462.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 1.0
22gb|AC153997.3| Mus musculus 6 BAC RP24-571G22 (Roswell Park Canc... 40 1.0
23emb|BX469928.8| Zebrafish DNA sequence from clone DKEYP-47C5 in ... 40 1.0
24gb|AF128395.1|F5K24 Arabidopsis thaliana BAC F5K24 40 1.0
25emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 i... 40 1.0
26dbj|AP006098.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 1.0
27gb|BC082670.1| Xenopus laevis embryonic serine protease-1, mRNA ... 38 4.0
28gb|AY497401.1| Populus balsamifera subsp. trichocarpa microsatel... 38 4.0
29gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 38 4.0
30gb|AE006525.1| Streptococcus pyogenes M1 GAS, section 54 of 167 ... 38 4.0
31gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 38 4.0
32gb|AY915026.1| Schistosoma japonicum SJCHGC02259 protein mRNA, p... 38 4.0
33gb|AY815750.1| Schistosoma japonicum SJCHGC02258 protein mRNA, c... 38 4.0
34gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, com... 38 4.0
35emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in ... 38 4.0
36emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 m... 38 4.0
37ref|XM_725276.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 4.0
38gb|AC019117.4| Homo sapiens BAC clone RP11-507K12 from 7, comple... 38 4.0
39ref|XM_673009.1| Plasmodium berghei strain ANKA hypothetical pro... 38 4.0
40gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome 38 4.0
41gb|AC161046.2| Mus musculus BAC clone RP24-266E5 from chromosome... 38 4.0
42emb|CR392025.7| Zebrafish DNA sequence from clone CH211-248P17 i... 38 4.0
43emb|AL354952.12| Human DNA sequence from clone RP11-536I1 on chr... 38 4.0
44emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chrom... 38 4.0
45gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, comp... 38 4.0
46emb|Z48736.1|LECYP3GN L.esculentum cyp-3 gene for pre-pro-cystei... 38 4.0
47emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polym... 38 4.0
48gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 38 4.0
49emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 38 4.0
50emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, ... 38 4.0
51emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete s... 38 4.0
52gb|BC099267.1| Xenopus laevis embryonic serine protease-1, mRNA ... 38 4.0
53gb|DQ086503.1| Acari environmental sample isolate ACARI05B large... 38 4.0
54gb|DQ086502.1| Acari environmental sample isolate ACARI05A large... 38 4.0
55gb|AC117411.3| Homo sapiens 3 BAC RP11-55O2 (Roswell Park Cancer... 38 4.0
56gb|AC067740.11| Homo sapiens 3 BAC RP11-91M15 (Roswell Park Canc... 38 4.0
57gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomi... 38 4.0
58dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 38 4.0
59gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete s... 38 4.0
60dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.0
61dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.0
62dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic D... 38 4.0
63gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete s... 38 4.0
64gb|AF003625.2| Homo sapiens chromosome X clone Qc-12F7, Qc-11H4 ... 38 4.0
65gb|AC115857.16| Mus musculus chromosome 5, clone RP24-280I13, co... 38 4.0
66gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosom... 38 4.0
67dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.0
68dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.0
69gb|AC112941.7| Mus musculus chromosome 1, clone RP23-466C15, com... 38 4.0
70gb|AC122545.13| Mus musculus chromosome 5, clone RP23-324H16, co... 38 4.0
71emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BA... 38 4.0
72emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chr... 38 4.0
73emb|AL935131.7| Zebrafish DNA sequence from clone CH211-276G21, ... 38 4.0
74emb|CR394551.9| Zebrafish DNA sequence from clone CH211-285E3 in... 38 4.0
75emb|AL929422.6| Mouse DNA sequence from clone RP24-234H23 on chr... 38 4.0
76dbj|AB038496.1| Xenopus laevis Xesp-1 mRNA for embryonic serine ... 38 4.0
77emb|AL831773.2| Mouse DNA sequence from clone RP23-296B1 on chro... 38 4.0
78emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chro... 38 4.0 
>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
              (pseudo)gene for a novel protein similar to high-mobility
              group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     ataaataatggtataaattac 45
              |||||||||||||||||||||
Sbjct: 118335 ataaataatggtataaattac 118355
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>emb|AL138653.1|ATT32A11 Arabidopsis thaliana DNA chromosome 3, BAC clone T32A11
          Length = 129021

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     attatttaattatcacataaataat 33
             ||||||||||||||| |||||||||
Sbjct: 66856 attatttaattatcaaataaataat 66880
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>emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chromosome 4 Contains a
             high mobility group box 1 (Hmgb1) pseudogene, complete
             sequence
          Length = 185595

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ataaataatggtataaattac 45
             |||||||||||||||||||||
Sbjct: 77668 ataaataatggtataaattac 77688
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>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23,
             complete sequence
          Length = 171113

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    acataaataatggtataaatt 43
             |||||||||||||||||||||
Sbjct: 61504 acataaataatggtataaatt 61524
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>gb|AC104131.4| Homo sapiens BAC clone RP11-324H23 from 2, complete sequence
          Length = 154891

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 5     aataattatttaattatcacataaa 29
             |||||||||||||||||||| ||||
Sbjct: 50390 aataattatttaattatcacttaaa 50414
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>gb|AC013473.8| Homo sapiens BAC clone RP11-504G5 from 2, complete sequence
          Length = 170781

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    atttaattatcacataaataa 32
             |||||||||||||||||||||
Sbjct: 70659 atttaattatcacataaataa 70639
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>gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158066

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 9     attatttaattatcacataaataat 33
             ||||||||||||||| |||||||||
Sbjct: 59871 attatttaattatcatataaataat 59847
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>emb|AL162420.13| Human DNA sequence from clone RP11-380P16 on chromosome 9 Contains the
             IFNA17 gene for interferon, alpha 17, a interferon, omega
             1 (IFNW1) pseudogene,the IFNA14 gene for interferon, alpha
             14, the IFNA5 gene for interferon, alpha 5, a novel gene
             (KIAA1354) (FLJ13568) and 2 interferon pseudogenes,
             complete sequence
          Length = 124491

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 11    tatttaattatcacataaataatggtataaat 42
             ||||| ||||||||||||| ||||| ||||||
Sbjct: 62363 tattttattatcacataaagaatggaataaat 62332
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>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 9    attatttaattatcacataaataa 32
            ||||||||||||||| ||||||||
Sbjct: 1669 attatttaattatcaaataaataa 1692
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>emb|AL161507.2|ATCHRIV19 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 19
          Length = 183181

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      attatttaattatcacataaataa 32
              ||||||||||||||| ||||||||
Sbjct: 179850 attatttaattatcaaataaataa 179873
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>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence
          Length = 218832

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 11     tatttaattatcacataaataatggtataaat 42
              ||||| ||||||||||||| ||||| ||||||
Sbjct: 122469 tattttattatcacataaagaatggaataaat 122500
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>gb|AC117806.11| Mus musculus chromosome 15, clone RP24-566D14, complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    attattacagattgaaaaca 82
             ||||||||||||||||||||
Sbjct: 77449 attattacagattgaaaaca 77430
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>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete
            sequence
          Length = 98432

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 9    attatttaattatcacataaataa 32
            ||||||||||||||| ||||||||
Sbjct: 9715 attatttaattatcaaataaataa 9692
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 31      aatggtataaattacatgggtggt 54
               |||||| |||||||||||||||||
Sbjct: 2691378 aatggtttaaattacatgggtggt 2691401
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>dbj|AK049426.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430006N01
           product:unclassifiable, full insert sequence
          Length = 1269

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  attattacagattgaaaaca 82
           ||||||||||||||||||||
Sbjct: 631 attattacagattgaaaaca 650
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>gb|AC100865.5| Homo sapiens chromosome 11, clone RP11-449L13, complete sequence
          Length = 202683

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ataaataatggtataaatta 44
              ||||||||||||||||||||
Sbjct: 155260 ataaataatggtataaatta 155279
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>gb|AY299292.1| Arabidopsis thaliana clone E6 mRNA sequence
          Length = 1419

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   attatttaattatcacataaataa 32
           ||||||||||||||| ||||||||
Sbjct: 137 attatttaattatcaaataaataa 114
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>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2
          Length = 87219

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attatttaattatcacataaataa 32
             ||||||||||||||| ||||||||
Sbjct: 62489 attatttaattatcaaataaataa 62512
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>dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F6H5
          Length = 95681

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attatttaattatcacataaataa 32
             ||||||||||||||| ||||||||
Sbjct: 92321 attatttaattatcaaataaataa 92344
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>dbj|AB028614.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MIF6
          Length = 82347

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     attatttaattatcacataaataa 32
             ||||||||||||||| ||||||||
Sbjct: 28098 attatttaattatcaaataaataa 28075
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>dbj|AP002462.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T8N9
          Length = 36329

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attatttaattatcacataaataa 32
             ||||||||||||||| ||||||||
Sbjct: 21634 attatttaattatcaaataaataa 21657
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>gb|AC153997.3| Mus musculus 6 BAC RP24-571G22 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 150676

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    tatttaattatcacataaataatg 34
             ||||||||||||||| ||||||||
Sbjct: 43492 tatttaattatcacagaaataatg 43515
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>emb|BX469928.8| Zebrafish DNA sequence from clone DKEYP-47C5 in linkage group 22,
             complete sequence
          Length = 141594

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aataattatttaattatcac 24
             ||||||||||||||||||||
Sbjct: 90325 aataattatttaattatcac 90344
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>gb|AF128395.1|F5K24 Arabidopsis thaliana BAC F5K24
          Length = 109786

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attatttaattatcacataaataa 32
             ||||||||||||||| ||||||||
Sbjct: 59579 attatttaattatcaaataaataa 59602
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>emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 in linkage group 16,
              complete sequence
          Length = 166747

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     acataaataatggtataaat 42
              ||||||||||||||||||||
Sbjct: 156275 acataaataatggtataaat 156256
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>dbj|AP006098.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G08, TM0175,
             complete sequence
          Length = 108582

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    acagattgaaaacatataaagcag 92
             ||||||| ||||||||||||||||
Sbjct: 72398 acagatttaaaacatataaagcag 72421
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>gb|BC082670.1| Xenopus laevis embryonic serine protease-1, mRNA (cDNA clone
            IMAGE:6864235), partial cds
          Length = 1877

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   ataaataatggtataaatt 43
            |||||||||||||||||||
Sbjct: 1327 ataaataatggtataaatt 1345
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>gb|AY497401.1| Populus balsamifera subsp. trichocarpa microsatellite ORPM_064
          sequence
          Length = 605

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 32 atggtataaattacatggg 50
          |||||||||||||||||||
Sbjct: 48 atggtataaattacatggg 30
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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ttatttaattatcacataa 28
              |||||||||||||||||||
Sbjct: 552229 ttatttaattatcacataa 552247
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>gb|AE006525.1| Streptococcus pyogenes M1 GAS, section 54 of 167 of the complete
            genome
          Length = 10029

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   ttatttaattatcacataa 28
            |||||||||||||||||||
Sbjct: 3125 ttatttaattatcacataa 3143
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ttatttaattatcacataa 28
              |||||||||||||||||||
Sbjct: 612127 ttatttaattatcacataa 612145
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>gb|AY915026.1| Schistosoma japonicum SJCHGC02259 protein mRNA, partial cds
          Length = 772

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  taattatcacataaataat 33
           |||||||||||||||||||
Sbjct: 503 taattatcacataaataat 485
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>gb|AY815750.1| Schistosoma japonicum SJCHGC02258 protein mRNA, complete cds
          Length = 2106

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   taattatcacataaataat 33
            |||||||||||||||||||
Sbjct: 1512 taattatcacataaataat 1494
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>gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, complete sequence
          Length = 241585

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    agattgaaaacatataaag 89
             |||||||||||||||||||
Sbjct: 11797 agattgaaaacatataaag 11815
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>emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in linkage group 10,
             complete sequence
          Length = 176107

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    atttaattatcacataaat 30
             |||||||||||||||||||
Sbjct: 36586 atttaattatcacataaat 36568
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>emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 map Xq28, complete
              sequence
          Length = 150061

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      cgaataattatttaattat 21
              |||||||||||||||||||
Sbjct: 115098 cgaataattatttaattat 115080
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>ref|XM_725276.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02486)
           partial mRNA
          Length = 1296

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  attatcacataaataatgg 35
           |||||||||||||||||||
Sbjct: 579 attatcacataaataatgg 561
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>gb|AC019117.4| Homo sapiens BAC clone RP11-507K12 from 7, complete sequence
          Length = 137228

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 5      aataattatttaattatcacataaata 31
              |||||||||||| |||||| |||||||
Sbjct: 110824 aataattatttatttatcaaataaata 110850
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>ref|XM_673009.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB104129.00.0) partial mRNA
          Length = 117

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 64 ttattacagattgaaaacatata 86
          |||||||| ||||||||||||||
Sbjct: 52 ttattacaaattgaaaacatata 74
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>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome
          Length = 1897573

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ttatttaattatcacataa 28
              |||||||||||||||||||
Sbjct: 549845 ttatttaattatcacataa 549863
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>gb|AC161046.2| Mus musculus BAC clone RP24-266E5 from chromosome 12, complete sequence
          Length = 171097

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 6     ataattatttaattatcacataa 28
             ||||||||||||||| |||||||
Sbjct: 91617 ataattatttaattaacacataa 91595
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>emb|CR392025.7| Zebrafish DNA sequence from clone CH211-248P17 in linkage group 17,
              complete sequence
          Length = 158863

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aataattatttaattatca 23
              |||||||||||||||||||
Sbjct: 155935 aataattatttaattatca 155917
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>emb|AL354952.12| Human DNA sequence from clone RP11-536I1 on chromosome 9 Contains the
             3' end of a pseudogene similar to part of A kinase (PRKA)
             anchor protein 8 (AKAP8), complete sequence
          Length = 54764

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    ataaataatggtataaattacat 47
             ||||||||||| |||||||||||
Sbjct: 33500 ataaataatggaataaattacat 33522
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>emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chromosome Xq25-27.1
             Contains the TNFSF5 gene for tumor necrosis factor
             (ligand) superfamily (member 5 ,hyper-IgM syndrome), a
             novel gene, the 3' end of the ARHGEF6 gene for  Rac/Cdc42
             guanine nucleotide exchange factor (GEF) 6 and a CpG
             island, complete sequence
          Length = 175706

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     cgaataattatttaattat 21
             |||||||||||||||||||
Sbjct: 88677 cgaataattatttaattat 88659
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>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence
          Length = 197037

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    taattatcacataaataat 33
             |||||||||||||||||||
Sbjct: 75995 taattatcacataaataat 76013
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>emb|Z48736.1|LECYP3GN L.esculentum cyp-3 gene for pre-pro-cysteine proteinase
          Length = 1388

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   ataatggtataaattacat 47
            |||||||||||||||||||
Sbjct: 1314 ataatggtataaattacat 1296
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>emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polymerase large subunit (EC
            2.7.7.6)
          Length = 9235

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   ttaattatcacataaataa 32
            |||||||||||||||||||
Sbjct: 8438 ttaattatcacataaataa 8420
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     taaataatggtataaatta 44
              |||||||||||||||||||
Sbjct: 502339 taaataatggtataaatta 502321
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     ttatttaattatcacataa 28
              |||||||||||||||||||
Sbjct: 345372 ttatttaattatcacataa 345354
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>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84
          Length = 195452

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    ttaattatcacataaataa 32
             |||||||||||||||||||
Sbjct: 32250 ttaattatcacataaataa 32268
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>emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete sequence
          Length = 253305

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    ataaataatggtataaattacat 47
             ||||||||||||||| |||||||
Sbjct: 29978 ataaataatggtatatattacat 30000
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>gb|BC099267.1| Xenopus laevis embryonic serine protease-1, mRNA (cDNA clone
            IMAGE:6878958), partial cds
          Length = 1562

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   ataaataatggtataaatt 43
            |||||||||||||||||||
Sbjct: 1366 ataaataatggtataaatt 1384
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>gb|DQ086503.1| Acari environmental sample isolate ACARI05B large subunit ribosomal
           RNA gene, partial sequence
          Length = 694

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 74  ttgaaaacatataaagcag 92
           |||||||||||||||||||
Sbjct: 168 ttgaaaacatataaagcag 150
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>gb|DQ086502.1| Acari environmental sample isolate ACARI05A large subunit ribosomal
           RNA gene, partial sequence
          Length = 694

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 74  ttgaaaacatataaagcag 92
           |||||||||||||||||||
Sbjct: 168 ttgaaaacatataaagcag 150
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>gb|AC117411.3| Homo sapiens 3 BAC RP11-55O2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 124524

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     atttaattatcacataaat 30
              |||||||||||||||||||
Sbjct: 100812 atttaattatcacataaat 100830
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>gb|AC067740.11| Homo sapiens 3 BAC RP11-91M15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 49996

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    tatttaattatcacataaa 29
             |||||||||||||||||||
Sbjct: 26088 tatttaattatcacataaa 26106
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>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete
             sequence
          Length = 94302

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 10    ttatttaattatcacataaataa 32
             |||||||||||||| ||||||||
Sbjct: 70668 ttatttaattatcaaataaataa 70690
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 5       aataattatttaattatcacata 27
               ||||||||||||| |||||||||
Sbjct: 1456263 aataattatttaaatatcacata 1456241
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>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aataattatttaattatca 23
              |||||||||||||||||||
Sbjct: 170086 aataattatttaattatca 170068
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 21       tcacataaataatggtata 39
                |||||||||||||||||||
Sbjct: 28096320 tcacataaataatggtata 28096338
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       tcgaataattatttaatta 20
               |||||||||||||||||||
Sbjct: 5272707 tcgaataattatttaatta 5272725
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>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1046G12
          Length = 163533

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     tcgaataattatttaatta 20
             |||||||||||||||||||
Sbjct: 24051 tcgaataattatttaatta 24069
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>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence
          Length = 263876

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     aattatttaattatcacat 26
             |||||||||||||||||||
Sbjct: 63242 aattatttaattatcacat 63260
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>gb|AF003625.2| Homo sapiens chromosome X clone Qc-12F7, Qc-11H4 map q28, complete
             sequence
          Length = 70580

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     aattatttaattatcacat 26
             |||||||||||||||||||
Sbjct: 46197 aattatttaattatcacat 46179
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>gb|AC115857.16| Mus musculus chromosome 5, clone RP24-280I13, complete sequence
          Length = 163661

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     agattgaaaacatataaag 89
              |||||||||||||||||||
Sbjct: 142296 agattgaaaacatataaag 142314
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>gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosome 5, complete sequence
          Length = 208536

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    agattgaaaacatataaag 89
             |||||||||||||||||||
Sbjct: 33469 agattgaaaacatataaag 33487
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>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0419B01
          Length = 149610

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     tcgaataattatttaatta 20
             |||||||||||||||||||
Sbjct: 67958 tcgaataattatttaatta 67976
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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1717_A09
          Length = 203132

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tcacataaataatggtata 39
             |||||||||||||||||||
Sbjct: 85967 tcacataaataatggtata 85985
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>gb|AC112941.7| Mus musculus chromosome 1, clone RP23-466C15, complete sequence
          Length = 166705

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     taattatcacataaataat 33
              |||||||||||||||||||
Sbjct: 150511 taattatcacataaataat 150529
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>gb|AC122545.13| Mus musculus chromosome 5, clone RP23-324H16, complete sequence
          Length = 202586

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aataattatttaattatca 23
              |||||||||||||||||||
Sbjct: 121881 aataattatttaattatca 121863
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>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project)
          Length = 99461

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    ttaattatcacataaataa 32
             |||||||||||||||||||
Sbjct: 24054 ttaattatcacataaataa 24072
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>emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chromosome 2, complete
              sequence
          Length = 245993

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ctcgaataattatttaatt 19
              |||||||||||||||||||
Sbjct: 124221 ctcgaataattatttaatt 124203
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>emb|AL935131.7| Zebrafish DNA sequence from clone CH211-276G21, complete sequence
          Length = 170938

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    tatttaattatcacataaa 29
             |||||||||||||||||||
Sbjct: 15156 tatttaattatcacataaa 15138
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>emb|CR394551.9| Zebrafish DNA sequence from clone CH211-285E3 in linkage group 10,
             complete sequence
          Length = 121335

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    atttaattatcacataaat 30
             |||||||||||||||||||
Sbjct: 71892 atttaattatcacataaat 71874
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>emb|AL929422.6| Mouse DNA sequence from clone RP24-234H23 on chromosome 4, complete
             sequence
          Length = 52881

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     aataattatttaattatca 23
             |||||||||||||||||||
Sbjct: 44065 aataattatttaattatca 44083
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>dbj|AB038496.1| Xenopus laevis Xesp-1 mRNA for embryonic serine protease-1, complete
            cds
          Length = 1850

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   ataaataatggtataaatt 43
            |||||||||||||||||||
Sbjct: 1318 ataaataatggtataaatt 1336
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>emb|AL831773.2| Mouse DNA sequence from clone RP23-296B1 on chromosome 4, complete
              sequence
          Length = 154298

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     attgaaaacatataaagca 91
              |||||||||||||||||||
Sbjct: 122887 attgaaaacatataaagca 122905
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>emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chromosome X, complete
              sequence
          Length = 107283

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      attatttaattatcacata 27
              |||||||||||||||||||
Sbjct: 100999 attatttaattatcacata 100981


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,438,208
Number of Sequences: 3902068
Number of extensions: 1438208
Number of successful extensions: 131638
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131249
Number of HSP's gapped (non-prelim): 389
length of query: 92
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 71
effective length of database: 17,151,101,840
effective search space: 1217728230640
effective search space used: 1217728230640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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