ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart43g10 |
|---|---|
| Clone Library Name | barley_pub |
>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (AtCSN6a) Length = 317 Score = 91.7 bits (226), Expect = 9e-19 Identities = 44/59 (74%), Positives = 51/59 (86%) Frame = -1 Query: 481 AMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAFM 305 AMESE+FQD+FL EYND LL+TYLAM TNCSS MNE+V+KFNT Y+R+ RRGGR AFM Sbjct: 260 AMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRN-TRRGGRTAFM 317
>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (AtCSN6b) Length = 317 Score = 84.0 bits (206), Expect = 2e-16 Identities = 40/59 (67%), Positives = 49/59 (83%) Frame = -1 Query: 481 AMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAFM 305 A ESEKF ++FL EYND LLM+YLAM TNC+S MNE+V+KFNT Y++ +RRGGR AFM Sbjct: 260 AAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKH-SRRGGRTAFM 317
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/57 (42%), Positives = 33/57 (57%) Frame = -1 Query: 478 MESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 308 + ++KF+ DF + ND LM+YL T +TMN+ V KFN Y+R R RG F Sbjct: 261 LSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQGIGRRMRGLF 317
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/57 (42%), Positives = 32/57 (56%) Frame = -1 Query: 478 MESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 308 + ++KF+ DF + ND LM YL T +TMN+ V KFN Y+R R RG F Sbjct: 267 LSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLF 323
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/57 (42%), Positives = 32/57 (56%) Frame = -1 Query: 478 MESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 308 + ++KF+ DF + ND LM YL T +TMN+ V KFN Y+R R RG F Sbjct: 270 LSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLF 326
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -1 Query: 478 MESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 308 M+ FQ++F T+ ND L++YL T + M+ V KFN Y+R + R RG + Sbjct: 284 MQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLY 340
>INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1)| Length = 1664 Score = 32.0 bits (71), Expect = 0.87 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +2 Query: 149 REDK----KIEKSQILPDLTDCTQKIASRYGNYSQNLSTDNQHQNLSCSRTVGTDLHEST 316 RED + EKS IL D++ + I +YGN S ++T + L+ R+ D S Sbjct: 607 REDNDDISRFEKSDILNDVSQTSDIIGDKYGNSSSEITT----KTLAPPRSDNNDKENSK 662 Query: 317 SASSPGRGSLIR 352 S P ++ Sbjct: 663 SLEDPANNESLQ 674
>SIPA_SALTY (Q56027) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 30.8 bits (68), Expect = 1.9 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Frame = +2 Query: 62 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYSQ 241 H + + H+N + N RH+++ K I+ S+ D + N Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID---------NSQRNGES 352 Query: 242 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 418 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGAIDHGIAGKIDVTAHATAEAVTNASSE 411 Query: 419 HEEGVVV 439 ++G VV Sbjct: 412 SKDGKVV 418
>SIPA_SALEN (Q8VQB5) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 30.8 bits (68), Expect = 1.9 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Frame = +2 Query: 62 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYSQ 241 H + + H+N + N RH+++ K I+ S+ D + N Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID---------NSQRNGES 352 Query: 242 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 418 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGAIDHGIAGKIDVTAHATAEAVTNASSE 411 Query: 419 HEEGVVV 439 ++G VV Sbjct: 412 SKDGKVV 418
>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 30.4 bits (67), Expect = 2.5 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Frame = +2 Query: 62 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYSQ 241 H + + H+N + N RH+++ K I+ S+ D + R+G Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID-------NSQRHG--ES 352 Query: 242 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 418 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGTIDHGIAGKIDVTAHATAEAVTNSSSE 411 Query: 419 HEEGVVV 439 ++G VV Sbjct: 412 SKDGKVV 418
>SEC2_YEAST (P17065) Rab guanine nucleotide exchange factor SEC2 (GDP-GTP| exchange factor SEC2) Length = 759 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 143 QPREDKKIEKSQILPDLTDCTQKIAS-RYGNYSQNLSTDNQHQNLSCSRTVGTDLHESTS 319 Q RE+ I++++ ++ Q I+S R + +N DN + L + T+G E Sbjct: 675 QFREESAIDQTEFENAESNVKQNISSKRASSGDENSKKDNNEKTLKTNLTIGDKTQEQIG 734 Query: 320 ASSPGRG 340 +SP G Sbjct: 735 ENSPSSG 741
>L_MEASE (P12576) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 29.6 bits (65), Expect = 4.3 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 114 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTILKISARITSTKTSAAAGR 290 ++P SS NP + SL Y R I + +LR+D G I A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 291 LEPIYMKAPRPP 326 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>L_MEASA (P35975) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 29.6 bits (65), Expect = 4.3 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 114 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTILKISARITSTKTSAAAGR 290 ++P SS NP + SL Y R I + +LR+D G I A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 291 LEPIYMKAPRPP 326 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>YS56_CAEEL (Q09378) Hypothetical protein ZK673.6| Length = 284 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%) Frame = +2 Query: 149 REDKKIEKSQILPDLTD-CTQ 208 R KK+EK+QILPDL D CT+ Sbjct: 172 RRRKKVEKTQILPDLRDQCTK 192
>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1237 Score = 29.3 bits (64), Expect = 5.6 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Frame = -3 Query: 428 PPH-DLPCNVHELFKHNERVGREV*HHV*EIPCQERRPRCFHVDRFQ-------PSCCS* 273 P H LP +V E F + + H PC + RP C H+ + Q P C Sbjct: 1079 PRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQSRPSCRHLAQAQSLRLPSYPEACVE 1138 Query: 272 GFGAG 258 G AG Sbjct: 1139 GVPAG 1143
>SOMA_ESOLU (P34744) Somatotropin precursor (Growth hormone)| Length = 209 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Frame = +2 Query: 62 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYSQ 241 H +S L+ N + + N + LI+ ++ +P L D + YGNY Q Sbjct: 113 HTMSNNLNQNQMSEKLSNLKVGINLLIKGNQED-------VPSLDDNDSQQLLPYGNYYQ 165 Query: 242 NL-STDNQHQNLSCSRTVGTDLHE 310 NL DN +N D+H+ Sbjct: 166 NLGDNDNVRRNYELLACFKKDMHK 189
>TAIP2_HUMAN (Q8WYN3) TGF-beta-induced apoptosis protein 2 (TAIP-2)| Length = 585 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 75 ELYMSTSGQEG*SINPGTSSH*SNPERIRRLKSLR 179 E+ S S G S+NP TSSH + ++R K LR Sbjct: 27 EVSSSESADSGDSVNPSTSSHFTPSSILKREKRLR 61
>BCL9_DROME (Q961D9) Bcl-9 homolog (Protein legless)| Length = 1469 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 203 TQKIASRYGNYSQNLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGS-----LIRGVKLL 367 T + N+ ++ST ++ Q + G DL + T S PG + ++GVK+ Sbjct: 459 TSRSGQNSRNHVDSISTSSESQAIKILEAAGVDLGQVTKGSDPGLTTENNIVSLQGVKVP 518 Query: 368 DQ 373 D+ Sbjct: 519 DE 520
>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1239 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = -3 Query: 428 PPH-DLPCNVHELFKHNERVGREV*HHV*EIPCQERRPRCFHVDRFQ 291 P H LP +V E F + + H PC + RP C HV + Q Sbjct: 1080 PRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQSRPSCRHVAQTQ 1126
>TMOE_PSEME (Q00460) Toluene-4-monooxygenase system protein E (EC 1.14.13.-)| Length = 326 Score = 28.5 bits (62), Expect = 9.6 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +2 Query: 20 KKPG*DPDTS*LEQHLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQ-ILPDLT 196 K+PG +E+ L + F + ++ +P VES+ +P + + E + +LP L Sbjct: 191 KEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLI 250 Query: 197 DCTQKIASRYGNYSQNL 247 D K A R+ +S+ L Sbjct: 251 DSQLKDAERHSRWSKAL 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,293,591 Number of Sequences: 219361 Number of extensions: 1363514 Number of successful extensions: 3465 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3463 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
