>ref|XM_483183.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1408

 Score =  212 bits (107), Expect = 8e-52
 Identities = 152/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 300  atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 359
            |||||||||||||||||||||||||||||||||||||  || ||||| || || | ||||
Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026

                                                                        
Query: 360  aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 419
            ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966

                                                           
Query: 420  atgaggagggtgtcgttgtattccgttaagaaatcatcttggaattt 466
            |||||||||||||| ||||||||| ||| ||| ||||||||||||||
Sbjct: 965  atgaggagggtgtcattgtattccattaggaagtcatcttggaattt 919

>dbj|AK058215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D12, full
            insert sequence
          Length = 1408

 Score =  212 bits (107), Expect = 8e-52
 Identities = 152/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 300  atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 359
            |||||||||||||||||||||||||||||||||||||  || ||||| || || | ||||
Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026

                                                                        
Query: 360  aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 419
            ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966

                                                           
Query: 420  atgaggagggtgtcgttgtattccgttaagaaatcatcttggaattt 466
            |||||||||||||| ||||||||| ||| ||| ||||||||||||||
Sbjct: 965  atgaggagggtgtcattgtattccattaggaagtcatcttggaattt 919

>emb|AM234671.1| Oryza sativa mRNA for COP9 signalosome subunit 6 (csn6 gene)
          Length = 1408

 Score =  212 bits (107), Expect = 8e-52
 Identities = 152/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 300  atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 359
            |||||||||||||||||||||||||||||||||||||  || ||||| || || | ||||
Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026

                                                                        
Query: 360  aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 419
            ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966

                                                           
Query: 420  atgaggagggtgtcgttgtattccgttaagaaatcatcttggaattt 466
            |||||||||||||| ||||||||| ||| ||| ||||||||||||||
Sbjct: 965  atgaggagggtgtcattgtattccattaggaagtcatcttggaattt 919

>gb|AY104920.1| Zea mays PCO100740 mRNA sequence
          Length = 1562

 Score =  198 bits (100), Expect = 1e-47
 Identities = 160/180 (88%)
 Strand = Plus / Minus

                                                                        
Query: 302  ctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgttaaa 361
            |||||||||||||||||||||||||||||||| ||  | |||||||||  | ||||| | 
Sbjct: 1150 ctacatgaaagcacctcggcctcctctcctggtagtcggtctctcatagcttgtgttgat 1091

                                                                        
Query: 362  cttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtcat 421
             |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 1090 tttctcgaccaactcattcattgtgcttgaacagttagtgaacattgccaggtaagtcat 1031

                                                                        
Query: 422  gaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccatagc 481
            |||||| ||||||||||||||| |||| || ||||||||||||||||  |||||| ||||
Sbjct: 1030 gaggagagtgtcgttgtattccattaaaaagtcatcttggaatttctgtgattccgtagc 971

>gb|BT017731.1| Zea mays clone EL01N0448B12.c mRNA sequence
          Length = 1383

 Score =  182 bits (92), Expect = 7e-43
 Identities = 158/180 (87%)
 Strand = Plus / Minus

                                                                        
Query: 302  ctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgttaaa 361
            |||||||||||||||||| ||||||||||||  ||  | |||||||||  | ||||| | 
Sbjct: 1070 ctacatgaaagcacctcgacctcctctcctgctagtcgttctctcatagctcgtgtttat 1011

                                                                        
Query: 362  cttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtcat 421
            ||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||
Sbjct: 1010 cttctcgaccaactcgttcattgtgcttgaacatttagtgaccattgcaaggtaggtcat 951

                                                                        
Query: 422  gaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccatagc 481
            |||||| ||||||||||||||| ||||||| || |||||||||||||  || ||||||||
Sbjct: 950  gaggagagtgtcgttgtattccattaagaagtcgtcttggaatttctgtgactccatagc 891



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 312  gcacctcggcctcctctcctg 332
            |||||||||||||||||||||
Sbjct: 1202 gcacctcggcctcctctcctg 1182

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                            
Query: 300      atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 359
                |||||||||||||||||||||||||||||||||||||  || ||||| || || | ||||
Sbjct: 24674317 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 24674376

                                             
Query: 360      aacttctcgaccaactcgttcattgtgct 388
                ||||||||||||| ||| |||||||||||
Sbjct: 24674377 aacttctcgaccagctcattcattgtgct 24674405



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                         
Query: 387      cttgaacagttcgtgaacattgcaaggtaagtcatgaggagggtgtcgttgtattcc 443
                ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 24674691 cttgaacagttagtgaacatagcaaggtaagtcatgaggagggtgtcattgtattcc 24674747

>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A06
          Length = 92836

 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                         
Query: 300   atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 359
             |||||||||||||||||||||||||||||||||||||  || ||||| || || | ||||
Sbjct: 46621 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 46680

                                          
Query: 360   aacttctcgaccaactcgttcattgtgct 388
             ||||||||||||| ||| |||||||||||
Sbjct: 46681 aacttctcgaccagctcattcattgtgct 46709



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                      
Query: 387   cttgaacagttcgtgaacattgcaaggtaagtcatgaggagggtgtcgttgtattcc 443
             ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 46995 cttgaacagttagtgaacatagcaaggtaagtcatgaggagggtgtcattgtattcc 47051

>emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on chromosome 6 Contains the
             GRM4 gene for glutamate receptor (metabotropic 4) and a
             CpG island, complete sequence
          Length = 118771

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 318   cggcctcctctcctggcagggga 340
             |||||||||||||||||||||||
Sbjct: 58726 cggcctcctctcctggcagggga 58704



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   gcctcctctcctggcagggga 340
             |||||||||||||||||||||
Sbjct: 58659 gcctcctctcctggcagggga 58639

>gb|DQ202456.1| Polystichum deltodon voucher SG Lu/Z10 Rps4 (rps4) gene, partial
           cds; and rps4-trnS intergenic spacer, partial sequence;
           chloroplast
          Length = 477

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 12  ccaatttgaagaagccgggat 32
           |||||||||||||||||||||
Sbjct: 403 ccaatttgaagaagccgggat 383

>gb|DQ202451.1| Polystichum acutidens voucher SG Lu/H12 Rps4 (rps4) gene, partial
           cds; and rps4-trnS intergenic spacer, partial sequence;
           chloroplast
          Length = 477

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 12  ccaatttgaagaagccgggat 32
           |||||||||||||||||||||
Sbjct: 409 ccaatttgaagaagccgggat 389

>gb|DQ151863.1| Polystichum dielsii voucher SG Lu/QC6 Rps4 (rps4) gene, partial
           cds; and rps4-trnS intergenic spacer, partial sequence;
           chloroplast
          Length = 472

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 12  ccaatttgaagaagccgggat 32
           |||||||||||||||||||||
Sbjct: 403 ccaatttgaagaagccgggat 383

>gb|AC107204.4| Homo sapiens 3p BAC RP11-655A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 266    caaaacctcagctgcagcagg 286
              |||||||||||||||||||||
Sbjct: 151927 caaaacctcagctgcagcagg 151947

>gb|AC118621.6| Mus musculus chromosome 7, clone RP24-63H14, complete sequence
          Length = 230898

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gagtcattaatccaacccag 150
              ||||||||||||||||||||
Sbjct: 104400 gagtcattaatccaacccag 104419

>gb|AC167548.1| Mus musculus chromosome 18, clone wi1-1164C4, complete sequence
          Length = 41219

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   accgatctacatgaaagcac 315
             ||||||||||||||||||||
Sbjct: 27408 accgatctacatgaaagcac 27427

>gb|U12964.1| Caenorhabditis elegans cosmid F26F4, complete sequence
          Length = 32365

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   ggataagaagattgaaaagt 173
             ||||||||||||||||||||
Sbjct: 13253 ggataagaagattgaaaagt 13234

>ref|XM_414316.1| PREDICTED: Gallus gallus LOC415973 (LOC415973), mRNA
          Length = 3578

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 148  cagagaggataagaagattgaaaa 171
            ||||||| ||||||||||||||||
Sbjct: 3507 cagagagcataagaagattgaaaa 3530

>gb|DQ151862.1| Polystichum christii voucher SG Lu/H13 Rps4 (rps4) gene, partial
           cds; and rps4-trnS intergenic spacer, partial sequence;
           chloroplast
          Length = 481

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  caatttgaagaagccgggat 32
           ||||||||||||||||||||
Sbjct: 408 caatttgaagaagccgggat 389

>gb|DQ151860.1| Polystichum auriculum voucher SG Lu/31 Rps4 (rps4) gene, partial
           cds; and rps4-trnS intergenic spacer, partial sequence;
           chloroplast
          Length = 466

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  caatttgaagaagccgggat 32
           ||||||||||||||||||||
Sbjct: 408 caatttgaagaagccgggat 389

>emb|BX572646.11| Zebrafish DNA sequence from clone DKEY-245O11 in linkage group 18,
             complete sequence
          Length = 116953

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   aagaaatcatcttggaattt 466
             ||||||||||||||||||||
Sbjct: 40824 aagaaatcatcttggaattt 40843

>emb|BX537322.5| Zebrafish DNA sequence from clone CH211-80L5 in linkage group 1,
             complete sequence
          Length = 65076

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   gtaagtcatgaggagggtgt 432
             ||||||||||||||||||||
Sbjct: 49720 gtaagtcatgaggagggtgt 49701

>emb|CR524392.1| Gallus gallus finished cDNA, clone ChEST275g2
          Length = 1648

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 148 cagagaggataagaagattgaaaa 171
           ||||||| ||||||||||||||||
Sbjct: 700 cagagagcataagaagattgaaaa 723

>ref|NM_065625.2| Caenorhabditis elegans NHL (ring finger b-box coiled coil) domain
           containing family member (nhl-2) (nhl-2) mRNA, complete
           cds
          Length = 3735

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 ggataagaagattgaaaagt 173
           ||||||||||||||||||||
Sbjct: 87  ggataagaagattgaaaagt 106

>gb|AC136777.8| Homo sapiens chromosome 8, clone RP11-63E5, complete sequence
          Length = 175263

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    agaaatcatcttggaatttc 467
              ||||||||||||||||||||
Sbjct: 129995 agaaatcatcttggaatttc 129976

>gb|AC103954.9| Homo sapiens chromosome 8, clone CTA-366D10, complete sequence
          Length = 169754

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    agaaatcatcttggaatttc 467
              ||||||||||||||||||||
Sbjct: 122461 agaaatcatcttggaatttc 122442

>gb|AC110274.5| Homo sapiens chromosome 8, clone RP11-161B15, complete sequence
          Length = 152802

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   agaaatcatcttggaatttc 467
             ||||||||||||||||||||
Sbjct: 23722 agaaatcatcttggaatttc 23703

>emb|AL929093.6| Zebrafish DNA sequence from clone CH211-149P10, complete sequence
          Length = 177248

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    gtaagtcatgaggagggtgt 432
              ||||||||||||||||||||
Sbjct: 162688 gtaagtcatgaggagggtgt 162707

>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence
          Length = 138251

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    agaaatcatcttggaatttc 467
              ||||||||||||||||||||
Sbjct: 137054 agaaatcatcttggaatttc 137073

>emb|BX465207.14| Zebrafish DNA sequence from clone DKEY-103I16 in linkage group 18,
              complete sequence
          Length = 265632

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    aagaaatcatcttggaattt 466
              ||||||||||||||||||||
Sbjct: 125459 aagaaatcatcttggaattt 125478

>emb|AL929190.3| Zebrafish DNA sequence from clone DKEY-77N11, complete sequence
          Length = 150892

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    gtaagtcatgaggagggtgt 432
              ||||||||||||||||||||
Sbjct: 111850 gtaagtcatgaggagggtgt 111831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,821,566
Number of Sequences: 3902068
Number of extensions: 3821566
Number of successful extensions: 67392
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67308
Number of HSP's gapped (non-prelim): 83
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)