ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart43g08 |
|---|---|
| Clone Library Name | barley_pub |
>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15| Length = 433 Score = 69.3 bits (168), Expect = 6e-12 Identities = 30/47 (63%), Positives = 41/47 (87%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 +R + RYKEKR+TRR+DK +RYESRKARAD+RLR++GRF KA+++ Sbjct: 384 NRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASEA 430
>COL14_ARATH (O22800) Zinc finger protein CONSTANS-LIKE 14| Length = 402 Score = 67.8 bits (164), Expect = 2e-11 Identities = 29/44 (65%), Positives = 39/44 (88%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKA 303 +RD + RYKEK++TRR+DK +RYE+RKARA++RLR+KGRF KA Sbjct: 356 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKA 399
>COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13| Length = 332 Score = 65.5 bits (158), Expect = 8e-11 Identities = 28/44 (63%), Positives = 39/44 (88%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKA 303 +R+ +SRYKEK+++RR++K +RYESRK RA+SR RI+GRFAKA Sbjct: 286 ERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKA 329
>COL9_ARATH (Q9SSE5) Zinc finger protein CONSTANS-LIKE 9| Length = 372 Score = 63.2 bits (152), Expect = 4e-10 Identities = 28/46 (60%), Positives = 37/46 (80%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 R+ + RYKEK++ R+FDK+VRY SRKARAD R R+KGRF KA ++ Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA 360
>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12| Length = 337 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/66 (50%), Positives = 40/66 (60%) Frame = -3 Query: 491 GMPMQAFPKRSGFDVVAGPDRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRF 312 G M P + F+V R+ RYKEK+ R F KQ+RY SRKARAD+R R+KGRF Sbjct: 260 GFIMSEAPWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRF 319 Query: 311 AKANQS 294 KA S Sbjct: 320 VKAGDS 325
>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5| Length = 355 Score = 60.1 bits (144), Expect = 3e-09 Identities = 27/47 (57%), Positives = 37/47 (78%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 DR+ + RY+EKR+ R+F+K +RY SRKA A+SR RIKGRFAK ++ Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET 330
>COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10| Length = 373 Score = 59.7 bits (143), Expect = 4e-09 Identities = 26/46 (56%), Positives = 36/46 (78%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 R+ + RYKEK++ R+FDK+VRY SRK RAD R R+KGRF K+ ++ Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA 361
>COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11| Length = 330 Score = 58.9 bits (141), Expect = 8e-09 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Frame = -3 Query: 470 PKRSGFDVVAGPD-RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 P S +V P RD RYK+K+ R F KQ+RY SRKARAD+R R+KGRF K+ ++ Sbjct: 262 PWESNVEVSFNPKLRDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSGET 321
>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2| Length = 347 Score = 57.8 bits (138), Expect = 2e-08 Identities = 26/43 (60%), Positives = 35/43 (81%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 +R+ + RY+EK++TR+FDK +RY SRKA A+ R RIKGRFAK Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319
>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3| Length = 294 Score = 57.0 bits (136), Expect = 3e-08 Identities = 26/47 (55%), Positives = 35/47 (74%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 +R+ + RY+EKR+ R+F+K +RY SRKA A+ R RIKGRFAK S Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274
>CONS_ARATH (Q39057) Zinc finger protein CONSTANS| Length = 373 Score = 56.6 bits (135), Expect = 4e-08 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 DR+ + RY+EKR+TR+F+K +RY SRKA A+ R R+ GRFAK Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAK 347
>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4| Length = 362 Score = 56.2 bits (134), Expect = 5e-08 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 +R+ + RY+EKR+ R+F+K +RY SRKA A+ R RIKGRFAK Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 336
>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7| Length = 392 Score = 56.2 bits (134), Expect = 5e-08 Identities = 26/43 (60%), Positives = 32/43 (74%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 +R+ + RYKEKRRTR F K++RYE RK A+ R RIKGRF K Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386
>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1| Length = 355 Score = 56.2 bits (134), Expect = 5e-08 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 DR+ + RY+EK++ R+F+K +RY SRKA A+ R RIKGRFAK Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327
>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6| Length = 406 Score = 55.5 bits (132), Expect = 8e-08 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ +SRY+EKRRTR F K++RYE RK A+ R R+KGRF K Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 398
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 55.5 bits (132), Expect = 8e-08 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ +SRY+EKRRTR F K++RYE RK A+ R R+KGRF K Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402
>COL8_ARATH (Q9M9B3) Putative zinc finger protein CONSTANS-LIKE 8| Length = 313 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/43 (48%), Positives = 32/43 (74%) Frame = -3 Query: 434 DRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 +R+ + RY++KR+ R F+K++RYE RK AD R R+KGRF + Sbjct: 264 EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVR 306
>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5| (Pseudo-response regulator 5) Length = 558 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/46 (45%), Positives = 34/46 (73%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 R+ +++++ KR+ R ++K+VRYESRK A+ R RIKG+F + QS Sbjct: 509 REAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/50 (44%), Positives = 34/50 (68%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS*ALT 282 R+ + +++ KR+ R FDK+VRY+SRK A+ R R+KG+F + S A T Sbjct: 417 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDAST 466
>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73| (Pseudo-response regulator 73) (OsPRR73) Length = 767 Score = 46.6 bits (109), Expect = 4e-05 Identities = 18/42 (42%), Positives = 32/42 (76%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ ++++++KR+ R F K+VRY+SRK A+ R RI+G+F + Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVR 753
>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95| (Pseudo-response regulator 95) (OsPRR95) Length = 623 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/42 (42%), Positives = 32/42 (76%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ +++++ KR+ R F+K+VRY+SRK A+ R R+KG+F + Sbjct: 574 REAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVR 615
>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7| (Pseudo-response regulator 7) Length = 727 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/42 (40%), Positives = 32/42 (76%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ ++++++KR+ R F K+VRY+SRK A+ R R++G+F + Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVR 710
>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37| (Pseudo-response regulator 37) (OsPRR37) Length = 742 Score = 43.1 bits (100), Expect = 4e-04 Identities = 17/42 (40%), Positives = 30/42 (71%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R + ++++KR+ R F K+VRY+SRK A+ R R++G+F + Sbjct: 682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVR 723
>GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 protein)| Length = 302 Score = 42.4 bits (98), Expect = 7e-04 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = -3 Query: 506 ANPGIGMPMQ--------AFPKRSGFDVVAGPDRDIVISRYKEKRRTRRFDKQVRYESRK 351 A PG+G P Q P+R P R + R++EKR+ R FDK++RY RK Sbjct: 119 APPGLGSPHQNNRVSSLPGTPQRFSI-----PQRLASLVRFREKRKGRNFDKKIRYTVRK 173 Query: 350 ARADSRLRIKGRFAKANQS 294 A R KG+F A + Sbjct: 174 EVALRMQRNKGQFTSAKSN 192
>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1| (Pseudo-response regulator 1) (OsPRR1) Length = 518 Score = 41.6 bits (96), Expect = 0.001 Identities = 17/42 (40%), Positives = 31/42 (73%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R +++++ KR+ R FDK+VRY +RK A++R R++G+F + Sbjct: 443 RAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVR 484
>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1| (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) Length = 618 Score = 41.6 bits (96), Expect = 0.001 Identities = 17/42 (40%), Positives = 29/42 (69%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ + +++ KR R FDK++RY +RK A+ R R+KG+F + Sbjct: 533 REEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVR 574
>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3| (Pseudo-response regulator 3) Length = 495 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/42 (40%), Positives = 29/42 (69%) Frame = -3 Query: 431 RDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAK 306 R+ + +++ KR+ R F+K+VRY SRK A+ R +KG+F + Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIR 483
>GAT27_ARATH (Q8GXL7) GATA transcription factor 27 (ZIM-like 1 protein)| Length = 297 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/48 (43%), Positives = 27/48 (56%) Frame = -3 Query: 437 PDRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 P R + R++EKR+ R FDK +RY RK A R KG+F A S Sbjct: 141 PQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS 188
>GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)| Length = 309 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -3 Query: 437 PDRDIVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQS 294 P R + R+++KR R F+K+VRY R+ A R KG+F + + Sbjct: 144 PQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMT 191
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 32.0 bits (71), Expect = 1.0 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +3 Query: 252 HMSNMQNILRSQGLT--LICLRKTPLDPQPAVCTSFAGLISDLFVKSSCPPLFFIAGNDN 425 H+ N++N G+ L+ +T + P+ A GL+ D+ + S +F I G+DN Sbjct: 195 HLFNLENFTALHGIVGDLVASVRTSMTPEQA---GAKGLVKDITAQESADLIFLIDGSDN 251 Query: 426 V 428 + Sbjct: 252 I 252
>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear| protein) (Le protein) Length = 671 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 312 KTPLDPQPAVCTSFAGLISDLFVKSSCPPLFFIAGNDNVAVRASNN 449 +T LD Q +C AG++ L+ S PP+ N A+RA + Sbjct: 44 QTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLKFAIRADGD 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,261,696 Number of Sequences: 219361 Number of extensions: 1527650 Number of successful extensions: 3702 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3702 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
