ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
2dbj|AK099864.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
3dbj|AB001882.1| Oryza sativa (japonica cultivar-group) mRNA for ... 137 4e-29
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 8e-15
5gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 90 8e-15
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
7gb|AY110245.1| Zea mays CL33966_1 mRNA sequence 78 3e-11
8dbj|AK120101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9emb|AL645844.18| Mouse DNA sequence from clone RP23-82B4 on chro... 44 0.44
10gb|AC055740.17| Homo sapiens 3 BAC RP11-239J2 (Roswell Park Canc... 44 0.44
11gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer... 44 0.44
12ref|NM_186092.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
13gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 42 1.7
14ref|NM_080450.2| Mus musculus gap junction membrane channel prot... 42 1.7
15gb|AF531168.1| Meloidogyne incognita putative esophageal gland c... 42 1.7
16gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome... 42 1.7
17emb|BX470169.7| Zebrafish DNA sequence from clone DKEY-31P8 in l... 42 1.7
18dbj|AK147913.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 1.7
19dbj|AK045577.1| Mus musculus adult male corpora quadrigemina cDN... 42 1.7
20dbj|AK034037.1| Mus musculus adult male diencephalon cDNA, RIKEN... 42 1.7
21dbj|AK047368.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 1.7
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 42 1.7
24dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
25emb|AL928670.6| Zebrafish DNA sequence from clone CH211-258F15, ... 42 1.7
26dbj|AK114217.1| Ciona intestinalis cDNA, clone:cicl047d06, full ... 42 1.7
27emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on ch... 42 1.7
28gb|AC125212.3| Mus musculus BAC clone RP23-131D6 from chromosome... 42 1.7
29gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1... 42 1.7
30gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome... 40 6.9
31gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome ... 40 6.9
32gb|AC107755.12| Mus musculus chromosome 9, clone RP23-225C11, co... 40 6.9
33gb|AC163650.2| Mus musculus BAC clone RP24-383A20 from chromosom... 40 6.9
34emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 40 6.9
35emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chr... 40 6.9
36emb|AL139409.9| Human DNA sequence from clone RP11-120D12 on chr... 40 6.9
37gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp... 40 6.9
38gb|AC012564.21| Homo sapiens chromosome 8, clone RP11-85M22, com... 40 6.9
39gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
40gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 6.9
41emb|CR406894.1| Gallus gallus finished cDNA, clone ChEST927a16 40 6.9
42gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.9
43gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosom... 40 6.9
44gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9... 40 6.9
45dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
46dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
47gb|AC090827.11| Homo sapiens chromosome 8, clone CTD-2594K21, co... 40 6.9
48gb|AF456419.1| Takifugu rubripes PDGFRalpha (PDGFRalpha) gene, c... 40 6.9
49dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
50gb|AF204747.1|AF204747 Newcastle disease virus isolate APMV1/Des... 40 6.9
51emb|AL954223.1| Pan troglodytes chromosome 22 clone PTB-187O16 m... 40 6.9
52dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.9
53gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.9
54gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
55gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Canc... 40 6.9
56dbj|AP004716.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.9 
>dbj|AK101822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067J11, full
            insert sequence
          Length = 1641

 Score =  137 bits (69), Expect = 4e-29
 Identities = 145/169 (85%), Gaps = 1/169 (0%)
 Strand = Plus / Minus

                                                                        
Query: 255  atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
            |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 1408 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 1349

                                                                        
Query: 314  aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
            |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 1348 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 1289

                                                             
Query: 374  gtttgtcaaatcttcttgtcctcctcttttctttatagcgggaaatgac 422
            |  |||| |||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 1288 gcctgtcgaatcttcttgtcttcctcttctctttatagcgagaaatgac 1240
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>dbj|AK099864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111C11, full
            insert sequence
          Length = 1571

 Score =  137 bits (69), Expect = 4e-29
 Identities = 145/169 (85%), Gaps = 1/169 (0%)
 Strand = Plus / Minus

                                                                        
Query: 255  atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
            |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 1376 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 1317

                                                                        
Query: 314  aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
            |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 1316 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 1257

                                                             
Query: 374  gtttgtcaaatcttcttgtcctcctcttttctttatagcgggaaatgac 422
            |  |||| |||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 1256 gcctgtcgaatcttcttgtcttcctcttctctttatagcgagaaatgac 1208
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>dbj|AB001882.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein,
            complete cds, clone:C60910
          Length = 1497

 Score =  137 bits (69), Expect = 4e-29
 Identities = 145/169 (85%), Gaps = 1/169 (0%)
 Strand = Plus / Minus

                                                                        
Query: 255  atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
            |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 1372 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 1313

                                                                        
Query: 314  aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
            |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 1312 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 1253

                                                             
Query: 374  gtttgtcaaatcttcttgtcctcctcttttctttatagcgggaaatgac 422
            |  |||| |||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 1252 gcctgtcgaatcttcttgtcttcctcttctctttatagcgagaaatgac 1204
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 103/121 (85%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                            
Query: 255      atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
                |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 13129760 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 13129701

                                                                            
Query: 314      aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
                |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 13129700 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 13129641

                 
Query: 374      g 374
                |
Sbjct: 13129640 g 13129640



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 385      cttcttgtcctcctcttttctttatagcgggaaatgac 422
                ||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 13129507 cttcttgtcttcctcttctctttatagcgagaaatgac 13129470



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 333      cctgctgtctgcacgagcttt 353
                |||||||||||||||||||||
Sbjct: 28817380 cctgctgtctgcacgagcttt 28817360
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 103/121 (85%), Gaps = 1/121 (0%)
 Strand = Plus / Plus

                                                                         
Query: 255   atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
             |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 96878 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 96937

                                                                         
Query: 314   aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
             |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 96938 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 96997

              
Query: 374   g 374
             |
Sbjct: 96998 g 96998



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 385   cttcttgtcctcctcttttctttatagcgggaaatgac 422
             ||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 97131 cttcttgtcttcctcttctctttatagcgagaaatgac 97168
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 103/121 (85%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                            
Query: 255      atgtccaatatgcaaaatatactgc-gaagtcaaggcttaactctgatttgccttcgcaa 313
                |||||||| |||||||||||| | | ||| | |||||| || |||||||  | || ||||
Sbjct: 13126535 atgtccaagatgcaaaatatattacagaaatgaaggctcaaatctgattgactttagcaa 13126476

                                                                            
Query: 314      aacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcatatcggacct 373
                |||| ||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||
Sbjct: 13126475 aacggcccttaatcctcagcctgctatcagcacgagctttgcgggactcataccggacct 13126416

                 
Query: 374      g 374
                |
Sbjct: 13126415 g 13126415



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 385      cttcttgtcctcctcttttctttatagcgggaaatgac 422
                ||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 13126282 cttcttgtcttcctcttctctttatagcgagaaatgac 13126245



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 333      cctgctgtctgcacgagcttt 353
                |||||||||||||||||||||
Sbjct: 28908704 cctgctgtctgcacgagcttt 28908684
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>gb|AY110245.1| Zea mays CL33966_1 mRNA sequence
          Length = 687

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                       
Query: 296 tctgatttgccttcgcaaaacgccccttgatcctcaacctgctgtctgcacgagctttgc 355
           |||| |||||||| |||||||||||||||||||| | |||||  || |||||| ||||||
Sbjct: 139 tctggtttgcctttgcaaaacgccccttgatcctgagcctgccatcagcacgaactttgc 80

                              
Query: 356 gggactcatatcggacctg 374
           | |||||||| ||||||||
Sbjct: 79  gcgactcataccggacctg 61
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>dbj|AK120101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022K23, full
            insert sequence
          Length = 1548

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                        
Query: 306  cttcgcaaaacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcata 365
            |||||| || || |||||||||||||| ||||  || |||||||| ||||| || || ||
Sbjct: 1216 cttcgcgaagcgtcccttgatcctcaatctgccatcggcacgagccttgcgcgattcgta 1157

                                                                  
Query: 366  tcggacctgtttgtcaaatcttcttgtcctcctcttttctttatagcgggaaat 419
             |||| ||| ||||| ||||||||  || ||||||| || || ||||| |||||
Sbjct: 1156 ccggatctgcttgtcgaatcttctgttcttcctcttctccttgtagcgcgaaat 1103
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>emb|AL645844.18| Mouse DNA sequence from clone RP23-82B4 on chromosome 11 Contains a
             heat shock protein Hsp90 family pseudogene, complete
             sequence
          Length = 146832

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 134   atatgttggcaacatacattat 155
             ||||||||||||||||||||||
Sbjct: 50050 atatgttggcaacatacattat 50029
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>gb|AC055740.17| Homo sapiens 3 BAC RP11-239J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147634

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 434   cagggccagcaacaacatcaaa 455
             ||||||||||||||||||||||
Sbjct: 95329 cagggccagcaacaacatcaaa 95308
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>gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 179604

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  cagggccagcaacaacatcaaa 455
            ||||||||||||||||||||||
Sbjct: 3727 cagggccagcaacaacatcaaa 3706
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>ref|NM_186092.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 306  cttcgcaaaacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcata 365
            |||||| || || |||||||||||||| ||||  || |||||||| ||||| || || ||
Sbjct: 1131 cttcgcgaagcgtcccttgatcctcaatctgccatcggcacgagccttgcgcgattcgta 1072

                                 
Query: 366  tcggacctgtttgtcaaatct 386
             |||| ||| ||||| |||||
Sbjct: 1071 ccggatctgcttgtcgaatct 1051
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete
           sequence
          Length = 184366

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 333 cctgctgtctgcacgagcttt 353
           |||||||||||||||||||||
Sbjct: 675 cctgctgtctgcacgagcttt 655
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>ref|NM_080450.2| Mus musculus gap junction membrane channel protein epsilon 1 (Gje1),
            mRNA
          Length = 3516

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  ttcttgtcctcctcttttctttata 410
            ||||||||||| |||||||||||||
Sbjct: 1595 ttcttgtcctcttcttttctttata 1619
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>gb|AF531168.1| Meloidogyne incognita putative esophageal gland cell secretory
           protein 8 (msp8) mRNA, complete cds
          Length = 1091

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 247 tcttccatatgtccaatatgc 267
           |||||||||||||||||||||
Sbjct: 773 tcttccatatgtccaatatgc 793
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>gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome 16, complete sequence
          Length = 140552

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 379   tcaaatcttcttgtcctcctcttttctttatag 411
             |||||| ||||||||| ||| ||||||||||||
Sbjct: 68516 tcaaattttcttgtccacctgttttctttatag 68484
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>emb|BX470169.7| Zebrafish DNA sequence from clone DKEY-31P8 in linkage group 7, complete
              sequence
          Length = 222405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     ctctcatttgcctctcatttg 42
              |||||||||||||||||||||
Sbjct: 148761 ctctcatttgcctctcatttg 148781
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>dbj|AK147913.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270094J22 product:gap junction membrane channel
            protein epsilon 1, full insert sequence
          Length = 4004

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  ttcttgtcctcctcttttctttata 410
            ||||||||||| |||||||||||||
Sbjct: 1734 ttcttgtcctcttcttttctttata 1758
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>dbj|AK045577.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230212O05 product:gap junction
            membrane channel protein epsilon 1, full insert sequence
          Length = 3485

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  ttcttgtcctcctcttttctttata 410
            ||||||||||| |||||||||||||
Sbjct: 1735 ttcttgtcctcttcttttctttata 1759
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>dbj|AK034037.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330149F20 product:gap junction membrane
            channel protein epsilon 1, full insert sequence
          Length = 1856

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  ttcttgtcctcctcttttctttata 410
            ||||||||||| |||||||||||||
Sbjct: 1559 ttcttgtcctcttcttttctttata 1583
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>dbj|AK047368.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930053J06 product:gap junction
            membrane channel protein epsilon 1, full insert sequence
          Length = 3516

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  ttcttgtcctcctcttttctttata 410
            ||||||||||| |||||||||||||
Sbjct: 1595 ttcttgtcctcttcttttctttata 1619
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                            
Query: 306      cttcgcaaaacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcata 365
                |||||| || || |||||||||||||| ||||  || |||||||| ||||| || || ||
Sbjct: 28131632 cttcgcgaagcgtcccttgatcctcaatctgccatcggcacgagccttgcgcgattcgta 28131691

                                     
Query: 366      tcggacctgtttgtcaaatct 386
                 |||| ||| ||||| |||||
Sbjct: 28131692 ccggatctgcttgtcgaatct 28131712
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
              sequence
          Length = 147344

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 333    cctgctgtctgcacgagcttt 353
              |||||||||||||||||||||
Sbjct: 124361 cctgctgtctgcacgagcttt 124341
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                          
Query: 306    cttcgcaaaacgccccttgatcctcaacctgctgtctgcacgagctttgcgggactcata 365
              |||||| || || |||||||||||||| ||||  || |||||||| ||||| || || ||
Sbjct: 114928 cttcgcgaagcgtcccttgatcctcaatctgccatcggcacgagccttgcgcgattcgta 114987

                                   
Query: 366    tcggacctgtttgtcaaatct 386
               |||| ||| ||||| |||||
Sbjct: 114988 ccggatctgcttgtcgaatct 115008
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>emb|AL928670.6| Zebrafish DNA sequence from clone CH211-258F15, complete sequence
          Length = 167613

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     ctctcatttgcctctcatttg 42
              |||||||||||||||||||||
Sbjct: 129439 ctctcatttgcctctcatttg 129419
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>dbj|AK114217.1| Ciona intestinalis cDNA, clone:cicl047d06, full insert sequence
          Length = 1870

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 479  gcattggcataccaataccaggatt 503
            |||||||||||||||||||| ||||
Sbjct: 1001 gcattggcataccaataccaagatt 977
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>emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on chromosome 16, complete
              sequence
          Length = 215987

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 379    tcaaatcttcttgtcctcctcttttctttatag 411
              |||||| ||||||||| ||| ||||||||||||
Sbjct: 173630 tcaaattttcttgtccacctgttttctttatag 173598
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>gb|AC125212.3| Mus musculus BAC clone RP23-131D6 from chromosome 5, complete sequence
          Length = 215413

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 386    ttcttgtcctcctcttttctttata 410
              ||||||||||| |||||||||||||
Sbjct: 107361 ttcttgtcctcttcttttctttata 107385
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>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1
              (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5
              (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb) gene,
              complete cds; PILRP4 (Pilrp4) pseudogene, complete
              sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3
              (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1) pseudogenes,
              complete sequence; and CYP3A13 (Cyp3a13) and GJE1 (Gje1)
              genes, complete cds
          Length = 194414

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 386    ttcttgtcctcctcttttctttata 410
              ||||||||||| |||||||||||||
Sbjct: 182732 ttcttgtcctcttcttttctttata 182708
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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   agtgttcttccatatgtcca 261
             ||||||||||||||||||||
Sbjct: 42782 agtgttcttccatatgtcca 42801
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>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence
          Length = 233904

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    taacagtcactctcatttgc 32
             ||||||||||||||||||||
Sbjct: 33705 taacagtcactctcatttgc 33724
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>gb|AC107755.12| Mus musculus chromosome 9, clone RP23-225C11, complete sequence
          Length = 178844

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aagaacaactcccctcaaaa 120
              ||||||||||||||||||||
Sbjct: 114831 aagaacaactcccctcaaaa 114850
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>gb|AC163650.2| Mus musculus BAC clone RP24-383A20 from chromosome 13, complete
             sequence
          Length = 210177

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctctcatttgcctctcattt 41
             ||||||||||||||||||||
Sbjct: 64011 ctctcatttgcctctcattt 64030
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>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    gccttctgccccatctgcac 229
              ||||||||||||||||||||
Sbjct: 226478 gccttctgccccatctgcac 226497
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>emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chromosome 6 Contains the
             5' end of transforming protein P21A (K-RAS) (C-K-RAS)
             pseudogene, complete sequence
          Length = 128386

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   aacatcaaagccacttcttt 466
             ||||||||||||||||||||
Sbjct: 77597 aacatcaaagccacttcttt 77578
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>emb|AL139409.9| Human DNA sequence from clone RP11-120D12 on chromosome 1q21.2-22
             Contains the 5' end of the gene for Fc receptor-like
             protein 1 (FCRH1), the CD5L gene for CD5 antigen-like
             (scavenger receptor cysteine rich family) and a
             mitochondrial ribosomal protein S21 (MRPS21) pseudogene,
             complete sequence
          Length = 63633

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttcttgtcctcctcttttct 405
             ||||||||||||||||||||
Sbjct: 40976 ttcttgtcctcctcttttct 40957
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>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   cctcaacctgctgtctgcac 346
             ||||||||||||||||||||
Sbjct: 64893 cctcaacctgctgtctgcac 64874
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>gb|AC012564.21| Homo sapiens chromosome 8, clone RP11-85M22, complete sequence
          Length = 207682

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ttggggaaagcttgcattgg 485
             ||||||||||||||||||||
Sbjct: 69309 ttggggaaagcttgcattgg 69290
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>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aaacttttacagagttcata 72
             ||||||||||||||||||||
Sbjct: 64438 aaacttttacagagttcata 64457
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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctctcatttgcctctcattt 41
             ||||||||||||||||||||
Sbjct: 49266 ctctcatttgcctctcattt 49285
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>emb|CR406894.1| Gallus gallus finished cDNA, clone ChEST927a16
          Length = 1025

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cctcaacctgctgtctgcac 346
           ||||||||||||||||||||
Sbjct: 663 cctcaacctgctgtctgcac 644
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    tcctcctcttttctttatag 411
              ||||||||||||||||||||
Sbjct: 558313 tcctcctcttttctttatag 558332
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>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete
             sequence
          Length = 195224

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   agtgttcttccatatgtcca 261
             ||||||||||||||||||||
Sbjct: 80537 agtgttcttccatatgtcca 80518
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>gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9, map 21q22.3, complete sequence
          Length = 194769

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    gccttctgccccatctgcac 229
              ||||||||||||||||||||
Sbjct: 113762 gccttctgccccatctgcac 113781
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      aaacttttacagagttcata 72
               ||||||||||||||||||||
Sbjct: 3407654 aaacttttacagagttcata 3407673
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       tacagagttcatagatggaa 79
                ||||||||||||||||||||
Sbjct: 27690511 tacagagttcatagatggaa 27690530
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>gb|AC090827.11| Homo sapiens chromosome 8, clone CTD-2594K21, complete sequence
          Length = 135010

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    ttggggaaagcttgcattgg 485
              ||||||||||||||||||||
Sbjct: 131518 ttggggaaagcttgcattgg 131499
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>gb|AF456419.1| Takifugu rubripes PDGFRalpha (PDGFRalpha) gene, complete cds,
             alternatively spliced; and kinase receptor c-kit (c-kit)
             gene, complete cds
          Length = 54735

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   agccacttcttttggggaaa 474
             ||||||||||||||||||||
Sbjct: 39163 agccacttcttttggggaaa 39182
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1153E06
          Length = 174588

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tacagagttcatagatggaa 79
             ||||||||||||||||||||
Sbjct: 39766 tacagagttcatagatggaa 39785
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>gb|AF204747.1|AF204747 Newcastle disease virus isolate APMV1/Desi
           Chicken/Chennai/India/D1/ 1995 fusion protein and matrix
           protein genes, partial cds
          Length = 486

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 catatgtccaatatgcaaaa 271
           ||||||||||||||||||||
Sbjct: 386 catatgtccaatatgcaaaa 367
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>emb|AL954223.1| Pan troglodytes chromosome 22 clone PTB-187O16 map q21.2, complete
             sequence
          Length = 165877

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   gccttctgccccatctgcac 229
             ||||||||||||||||||||
Sbjct: 83567 gccttctgccccatctgcac 83586
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>dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-410I24, complete
             sequence
          Length = 152715

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    aacagtcactctcatttgcctctc 37
             ||||||||||||||||| ||||||
Sbjct: 70458 aacagtcactctcatttccctctc 70481
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 491     caataccaggatttgcctgc 510
               ||||||||||||||||||||
Sbjct: 3742632 caataccaggatttgcctgc 3742613
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      aaacttttacagagttcata 72
               ||||||||||||||||||||
Sbjct: 3407575 aaacttttacagagttcata 3407594
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>gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172676

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cttcttttggggaaagcttg 479
             ||||||||||||||||||||
Sbjct: 70746 cttcttttggggaaagcttg 70765
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>dbj|AP004716.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1987G5
          Length = 189987

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    ttggggaaagcttgcattgg 485
              ||||||||||||||||||||
Sbjct: 108442 ttggggaaagcttgcattgg 108423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,062,501
Number of Sequences: 3902068
Number of extensions: 5062501
Number of successful extensions: 111895
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111541
Number of HSP's gapped (non-prelim): 348
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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