ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
2dbj|AK104732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
3dbj|AK101795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
4dbj|AK071912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
5ref|XM_472247.1| Oryza sativa (japonica cultivar-group), predic... 369 6e-99
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 285 7e-74
7emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 285 7e-74
8gb|AY105248.1| Zea mays PCO134665 mRNA sequence 262 1e-66
9gb|AY971683.1| Cirsium arvense microsatellite CarvC128 sequence 50 0.007
10emb|AL589942.10| Human DNA sequence from clone RP11-4F1 on chrom... 44 0.44
11emb|AL445492.10| Human DNA sequence from clone RP11-137O18 on ch... 44 0.44
12gb|AC114825.4| Mus musculus BAC clone RP24-104P22 from chromosom... 42 1.7
13emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chr... 42 1.7
14dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
17dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AK105517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosom... 40 6.9
20gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 6.9
21ref|XM_763655.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.9
22emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chro... 40 6.9
23emb|AL445226.9| Human DNA sequence from clone RP11-261F2 on chro... 40 6.9
24emb|AL031286.2|HS681J21 Human DNA sequence from clone RP4-681J21... 40 6.9
25gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene... 40 6.9
26dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.9
27gb|AY785435.1| Uncultured bacterium clone HZ04 genomic sequence 40 6.9
28emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.9
29gb|AY111046.1| Zea mays CL31773_1 mRNA sequence 40 6.9
30gb|AC130537.4| Mus musculus BAC clone RP23-412D3 from 8, complet... 40 6.9
31dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9
32dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.9
33gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosom... 40 6.9 
>dbj|AK104588.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G07, full
            insert sequence
          Length = 1239

 Score =  373 bits (188), Expect = e-100
 Identities = 341/392 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975

                                                                        
Query: 177  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 974  tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915

                                                                        
Query: 237  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 914  ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855

                                                                        
Query: 297  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 854  atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 795

                                                                        
Query: 357  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 794  tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 735

                                                                        
Query: 417  ctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 476
            ||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 734  ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 675

                                            
Query: 477  ttaccaattgcttttgttccatttgtgtccat 508
            || |||||||||||||| ||| ||||||||||
Sbjct: 674  ttgccaattgcttttgtgccacttgtgtccat 643
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>dbj|AK104732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C08, full
            insert sequence
          Length = 1239

 Score =  373 bits (188), Expect = e-100
 Identities = 341/392 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975

                                                                        
Query: 177  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 974  tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915

                                                                        
Query: 237  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 914  ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855

                                                                        
Query: 297  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 854  atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 795

                                                                        
Query: 357  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 794  tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 735

                                                                        
Query: 417  ctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 476
            ||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 734  ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 675

                                            
Query: 477  ttaccaattgcttttgttccatttgtgtccat 508
            || |||||||||||||| ||| ||||||||||
Sbjct: 674  ttgccaattgcttttgtgccacttgtgtccat 643
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>dbj|AK101795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066B14, full
            insert sequence
          Length = 1692

 Score =  373 bits (188), Expect = e-100
 Identities = 341/392 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1481 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1422

                                                                        
Query: 177  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1421 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1362

                                                                        
Query: 237  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 1361 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1302

                                                                        
Query: 297  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 1301 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 1242

                                                                        
Query: 357  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 1241 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 1182

                                                                        
Query: 417  ctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 476
            ||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 1181 ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 1122

                                            
Query: 477  ttaccaattgcttttgttccatttgtgtccat 508
            || |||||||||||||| ||| ||||||||||
Sbjct: 1121 ttgccaattgcttttgtgccacttgtgtccat 1090
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>dbj|AK071912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063J16, full
            insert sequence
          Length = 1487

 Score =  373 bits (188), Expect = e-100
 Identities = 341/392 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1365 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1306

                                                                        
Query: 177  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1305 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1246

                                                                        
Query: 237  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 1245 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1186

                                                                        
Query: 297  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 1185 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 1126

                                                                        
Query: 357  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 1125 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 1066

                                                                        
Query: 417  ctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 476
            ||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 1065 ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 1006

                                            
Query: 477  ttaccaattgcttttgttccatttgtgtccat 508
            || |||||||||||||| ||| ||||||||||
Sbjct: 1005 ttgccaattgcttttgtgccacttgtgtccat 974
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>ref|XM_472247.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1278

 Score =  369 bits (186), Expect = 6e-99
 Identities = 339/390 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  tcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaatg 178
            |||||| || |||||||  || |||||||| || || |||||||||||||||||||||||
Sbjct: 1278 tcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaatg 1219

                                                                        
Query: 179  ccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtgtc 238
             |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| 
Sbjct: 1218 gcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtgtt 1159

                                                                        
Query: 239  ccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatgat 298
            ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 1158 ccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatgat 1099

                                                                        
Query: 299  atccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgcttc 358
             |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || ||
Sbjct: 1098 gtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcctc 1039

                                                                        
Query: 359  gtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtcct 418
            |||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 1038 gtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtcct 979

                                                                        
Query: 419  gtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatgtt 478
            ||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| || ||
Sbjct: 978  gtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgatatt 919

                                          
Query: 479  accaattgcttttgttccatttgtgtccat 508
             |||||||||||||| ||| ||||||||||
Sbjct: 918  gccaattgcttttgtgccacttgtgtccat 889
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  285 bits (144), Expect = 7e-74
 Identities = 264/304 (86%)
 Strand = Plus / Plus

                                                                            
Query: 117      tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
                |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 18758009 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 18758068

                                                                            
Query: 177      tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
                || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 18758069 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 18758128

                                                                            
Query: 237      tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
                | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 18758129 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 18758188

                                                                            
Query: 297      atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
                || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 18758189 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 18758248

                                                                            
Query: 357      tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
                |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 18758249 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 18758308

                    
Query: 417      ctgt 420
                ||||
Sbjct: 18758309 ctgt 18758312



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                            
Query: 416      cctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaat 475
                |||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| ||
Sbjct: 18758484 cctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgat 18758543

                                                 
Query: 476      gttaccaattgcttttgttccatttgtgtccat 508
                 || |||||||||||||| ||| ||||||||||
Sbjct: 18758544 attgccaattgcttttgtgccacttgtgtccat 18758576
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score =  285 bits (144), Expect = 7e-74
 Identities = 264/304 (86%)
 Strand = Plus / Plus

                                                                          
Query: 117    tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
              |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 107172 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 107231

                                                                          
Query: 177    tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
              || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 107232 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 107291

                                                                          
Query: 237    tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
              | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 107292 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 107351

                                                                          
Query: 297    atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
              || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 107352 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 107411

                                                                          
Query: 357    tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
              |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 107412 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 107471

                  
Query: 417    ctgt 420
              ||||
Sbjct: 107472 ctgt 107475



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                          
Query: 416    cctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaat 475
              |||||| | ||||||||| ||||||||| | ||||||||||| |||||||||||||| ||
Sbjct: 107647 cctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgat 107706

                                               
Query: 476    gttaccaattgcttttgttccatttgtgtccat 508
               || |||||||||||||| ||| ||||||||||
Sbjct: 107707 attgccaattgcttttgtgccacttgtgtccat 107739
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>gb|AY105248.1| Zea mays PCO134665 mRNA sequence
          Length = 1817

 Score =  262 bits (132), Expect = 1e-66
 Identities = 327/392 (83%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 176
            ||||||||||| |||||||| || |||||||| || || || ||||||||||||||||||
Sbjct: 1530 tgtcatacggtgctgtttgcaggcaggggaacaacaccatcaaagaaatccccaaagtaa 1471

                                                                        
Query: 177  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 236
            || |||||||| ||||||||||||||||||||||||||||  ||||| || |||||||||
Sbjct: 1470 tggcgtggctcatgcaccagcttggagattatgtccctcaaggtgatgactccctcggtg 1411

                                                                        
Query: 237  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 296
            | ||| ||||| || || ||||||||||||||||||||    ||||||||||||||||||
Sbjct: 1410 ttccctttgtcatccacaacgtagatcctgtggatcttctcagagtccagcttcagtatg 1351

                                                                        
Query: 297  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 356
            || ||||||||    || ||  ||||||| ||||| || || ||||||| ||| || || 
Sbjct: 1350 atgtccttgattgtatcatcctttttgcaagtgatgacatcatgcagcaacggtgaggcc 1291

                                                                        
Query: 357  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 416
            ||  | ||||||||||| ||||| || || ||| ||||||||||||| |  | ||||| |
Sbjct: 1290 tcacgctgctcctggaggtggtgtcgaacagcactaaggaaatcctttgtcgtgattgac 1231

                                                                        
Query: 417  ctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 476
            ||||  | ||||||||||||||| ||| | | |||||| || ||||||||||||||||| 
Sbjct: 1230 ctgtgctctttgtatatcttgggagcagttaaaagatactggacatctctgatgctaata 1171

                                            
Query: 477  ttaccaattgcttttgttccatttgtgtccat 508
            |||||||| || |||| |||| ||||||||||
Sbjct: 1170 ttaccaatggcatttgctccacttgtgtccat 1139
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>gb|AY971683.1| Cirsium arvense microsatellite CarvC128 sequence
          Length = 721

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 416 cctgtattgtttgtatatcttgggggcactcagaagatattgtacatctctgatgctaat 475
           |||||| | |||||| |||| ||||||| | || ||| |||| | |||||||||||| ||
Sbjct: 277 cctgtaatctttgtaaatctcgggggcaattaggagaaattgaatatctctgatgcttat 218

                    
Query: 476 gttaccaat 484
           |||||||||
Sbjct: 217 gttaccaat 209
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>emb|AL589942.10| Human DNA sequence from clone RP11-4F1 on chromosome 10, complete
             sequence
          Length = 20938

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 487   cttttgttccatttgtgtccat 508
             ||||||||||||||||||||||
Sbjct: 20818 cttttgttccatttgtgtccat 20839
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>emb|AL445492.10| Human DNA sequence from clone RP11-137O18 on chromosome 10 Contains
            part of the gene for VPS10 domain receptor protein SORCS
            3 (SORCS3), complete sequence
          Length = 149248

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 487  cttttgttccatttgtgtccat 508
            ||||||||||||||||||||||
Sbjct: 1888 cttttgttccatttgtgtccat 1909
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>gb|AC114825.4| Mus musculus BAC clone RP24-104P22 from chromosome 3, complete sequence
          Length = 202237

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 485   tgcttttgttccatttgtgtc 505
             |||||||||||||||||||||
Sbjct: 86194 tgcttttgttccatttgtgtc 86214
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>emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chromosome 4 Contains a
             novel peudogene and a CpG island, complete sequence
          Length = 156075

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 407   tgagattgtcctgtattgtttgtat 431
             ||||||||||||||||||| |||||
Sbjct: 52666 tgagattgtcctgtattgtctgtat 52642
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 183   ggctcgtgcaccagcttggagattatgtc 211
             ||||||| ||||||||||| |||||||||
Sbjct: 31118 ggctcgtacaccagcttggcgattatgtc 31146
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 183      ggctcgtgcaccagcttggagattatgtc 211
                ||||||| ||||||||||| |||||||||
Sbjct: 40232166 ggctcgtacaccagcttggcgattatgtc 40232194
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 183   ggctcgtgcaccagcttggagattatgtc 211
             ||||||| ||||||||||| |||||||||
Sbjct: 97944 ggctcgtacaccagcttggcgattatgtc 97972
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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1425D05, complete sequence
          Length = 66450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 183   ggctcgtgcaccagcttggagattatgtc 211
             ||||||| ||||||||||| |||||||||
Sbjct: 23516 ggctcgtacaccagcttggcgattatgtc 23544
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>dbj|AK105517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F06, full
            insert sequence
          Length = 1473

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 183  ggctcgtgcaccagcttggagattatgtc 211
            ||||||| ||||||||||| |||||||||
Sbjct: 1255 ggctcgtacaccagcttggcgattatgtc 1227
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>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete sequence
          Length = 184079

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 390    gtaaggaaatccttggctgagatt 413
              ||||||||||||| ||||||||||
Sbjct: 110200 gtaaggaaatcctgggctgagatt 110177
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>gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aatgtacattttcttacaga 105
              ||||||||||||||||||||
Sbjct: 196414 aatgtacattttcttacaga 196395
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>ref|XM_763655.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_155_30673_36963)
            partial mRNA
          Length = 6291

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 92   cattttcttacagagtacagcgtt 115
            ||||||||| ||||||||||||||
Sbjct: 5448 cattttcttgcagagtacagcgtt 5471
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>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
              likely ortholog of mouse hepatoma-derived growth factor
              related protein 3 pseudogene (HDGFRP3), a novel protein
              similar to PAGE-5 protein (LOC203569), a novel protein
              similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
              cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
              family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ataatgtacattttcttaca 103
              ||||||||||||||||||||
Sbjct: 124731 ataatgtacattttcttaca 124712
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>emb|AL445226.9| Human DNA sequence from clone RP11-261F2 on chromosome 13, complete
             sequence
          Length = 56239

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aatgtacattttcttacaga 105
             ||||||||||||||||||||
Sbjct: 53298 aatgtacattttcttacaga 53279
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>emb|AL031286.2|HS681J21 Human DNA sequence from clone RP4-681J21 on chromosome 1q23.2-24.3
             Contains the 5' end of a novel gene, the 5' end of the
             gene for expressed in hematopoietic cells (heart, liver)
             (HLL) and a CpG island, complete sequence
          Length = 68770

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    agataatgtacattttctta 101
             ||||||||||||||||||||
Sbjct: 18244 agataatgtacattttctta 18225
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>gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene region, part 1 of 2
          Length = 180000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 366    tcctggagatggtgccggaccgca 389
              |||||||||||||| |||||||||
Sbjct: 174068 tcctggagatggtggcggaccgca 174091
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 366     tcctggagatggtgccggaccgca 389
               |||||||||||||| |||||||||
Sbjct: 2052553 tcctggagatggtggcggaccgca 2052576
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>gb|AY785435.1| Uncultured bacterium clone HZ04 genomic sequence
          Length = 1433

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 tcgtgcagcagcggcgacgc 355
           ||||||||||||||||||||
Sbjct: 238 tcgtgcagcagcggcgacgc 257
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     gatcacgtcgtgcagcagcg 348
               ||||||||||||||||||||
Sbjct: 2337289 gatcacgtcgtgcagcagcg 2337308
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>gb|AY111046.1| Zea mays CL31773_1 mRNA sequence
          Length = 549

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 acgacgccgtcgaagaaatc 166
           ||||||||||||||||||||
Sbjct: 498 acgacgccgtcgaagaaatc 479
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>gb|AC130537.4| Mus musculus BAC clone RP23-412D3 from 8, complete sequence
          Length = 194088

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   acatctctgatgctaatgtt 478
             ||||||||||||||||||||
Sbjct: 83277 acatctctgatgctaatgtt 83258
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>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
             sequence
          Length = 178812

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   atgtccctcagtgtgatcac 226
             ||||||||||||||||||||
Sbjct: 56361 atgtccctcagtgtgatcac 56380
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     gtcccccttgtcgtcgacca 255
               ||||||||||||||||||||
Sbjct: 1956409 gtcccccttgtcgtcgacca 1956428
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>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete
             sequence
          Length = 180189

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 390   gtaaggaaatccttggctgagatt 413
             ||||||||||||| ||||||||||
Sbjct: 43333 gtaaggaaatcctgggctgagatt 43310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,495,669
Number of Sequences: 3902068
Number of extensions: 4495669
Number of successful extensions: 84345
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84126
Number of HSP's gapped (non-prelim): 218
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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