Clone Name | rbart43f10 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ508228.2|HVU508228 Hordeum vulgare subsp. vulgare mRNA for ADP-ribosylation factor 1-like protein Length = 934 Score = 105 bits (53), Expect = 5e-20 Identities = 53/53 (100%) Strand = Plus / Minus Query: 115 gacaaagtaaaccttgtaaaaccacggcacagaaatactgataatatccatac 167 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 909 gacaaagtaaaccttgtaaaaccacggcacagaaatactgataatatccatac 857
>dbj|AB050957.1| Triticum aestivum arf mRNA for ADP-ribosylation factor, complete cds Length = 972 Score = 77.8 bits (39), Expect = 1e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 53 ttggcaaccgcacctcaatcttactaaaattcaaaaagacaggggttcatacacacaatg 112 ||||||||| || |||||||| |||||| |||||| || ||||||||| ||||||| || Sbjct: 950 ttggcaaccacaattcaatcttgctaaaactcaaaacgataggggttcagacacacattg 891 Query: 113 ttgacaaagtaaaccttgtaaaaccac 139 | |||| | |||||||||||||||||| Sbjct: 890 tcgacacattaaaccttgtaaaaccac 864
>gb|AY291453.1| Notophthalmus viridescens microsatellite Nvi 3 sequence Length = 559 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 tcatacacacaatgttgacaaagta 123 |||||||||||| |||||||||||| Sbjct: 384 tcatacacacaaagttgacaaagta 408
>ref|XM_459876.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E13684g) partial mRNA Length = 3072 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 caatgttgacaaagtaaaccttgt 131 ||||| |||||||||||||||||| Sbjct: 1855 caatgatgacaaagtaaaccttgt 1832
>ref|XM_776569.1| PREDICTED: Strongylocentrotus purpuratus similar to Polycystic kidney disease and receptor for egg jelly related protein precursor (PKD and REJ homolog) (LOC576242), partial mRNA Length = 3050 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 agaaatactgataatatcca 164 |||||||||||||||||||| Sbjct: 156 agaaatactgataatatcca 137
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 caatgttgacaaagtaaaccttgt 131 ||||| |||||||||||||||||| Sbjct: 1028978 caatgatgacaaagtaaaccttgt 1029001
>gb|AF422153.1|AF422153 Strongylocentrotus purpuratus receptor for egg jelly 3 protein (REJ3) mRNA, complete cds Length = 8739 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 agaaatactgataatatcca 164 |||||||||||||||||||| Sbjct: 244 agaaatactgataatatcca 225
>ref|NM_214636.1| Strongylocentrotus purpuratus receptor for egg jelly 3 (REJ3), mRNA Length = 8739 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 agaaatactgataatatcca 164 |||||||||||||||||||| Sbjct: 244 agaaatactgataatatcca 225
>emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in linkage group 16, complete sequence Length = 235236 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcacagaaatactgataatatcca 164 ||||| |||||||||||||||||| Sbjct: 193380 gcacacaaatactgataatatcca 193403
>emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chromosome 2, complete sequence Length = 99258 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gacaaagtaaaccttgtaaaacca 138 ||||||| |||||||||||||||| Sbjct: 53912 gacaaagaaaaccttgtaaaacca 53935
>ref|NM_194976.1| Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBb0042K08.6), mRNA Length = 3852 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaccaaccaacattggcaa 59 ||||||||||||||||||| Sbjct: 3376 aaccaaccaacattggcaa 3358
>gb|AC097447.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0042K08, complete sequence Length = 117839 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaccaaccaacattggcaa 59 ||||||||||||||||||| Sbjct: 44808 aaccaaccaacattggcaa 44826
>gb|AC099606.13| Mus musculus chromosome 7, clone RP23-360N6, complete sequence Length = 193975 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 acctcaatcttactaaaattcaa 86 |||||||||||||| |||||||| Sbjct: 153794 acctcaatcttactgaaattcaa 153772
>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence Length = 210347 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 tacacacaatgttgacaaa 120 ||||||||||||||||||| Sbjct: 88433 tacacacaatgttgacaaa 88415
>emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in linkage group 15, complete sequence Length = 185286 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 agtaaaccttgtaaaacca 138 ||||||||||||||||||| Sbjct: 160598 agtaaaccttgtaaaacca 160580 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 agtaaaccttgtaaaacca 138 ||||||||||||||||||| Sbjct: 72605 agtaaaccttgtaaaacca 72587
>emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chromosome 1 Contains part of the NTNG1 gene for netrin G1, complete sequence Length = 122032 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 116 acaaagtaaaccttgtaaaacca 138 ||||||||||| ||||||||||| Sbjct: 33112 acaaagtaaacgttgtaaaacca 33134
>emb|AL031183.4|HS1168A5 Human DNA sequence from clone RP5-1168A5 on chromosome Xq23 Contains a novel pseudogene, complete sequence Length = 75522 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 103 acacacaatgttgacaaagtaaa 125 |||||| |||||||||||||||| Sbjct: 13271 acacactatgttgacaaagtaaa 13249
>emb|AL022336.1|HS78F24 Human DNA sequence from clone RP1-78F24 on chromosome 22q12.1-12.3, complete sequence Length = 145414 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ttactaaaattcaaaaaga 91 ||||||||||||||||||| Sbjct: 129604 ttactaaaattcaaaaaga 129622
>gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158531 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 tcttactaaaattcaaaaa 89 ||||||||||||||||||| Sbjct: 5151 tcttactaaaattcaaaaa 5133
>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold Length = 347743 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 tactaaaattcaaaaagac 92 ||||||||||||||||||| Sbjct: 286309 tactaaaattcaaaaagac 286291
>gb|AC080004.12| Homo sapiens 3q BAC RP11-307O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 206162 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ttactaaaattcaaaaaga 91 ||||||||||||||||||| Sbjct: 7257 ttactaaaattcaaaaaga 7275
>gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, complete sequence Length = 161629 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ttactaaaattcaaaaaga 91 ||||||||||||||||||| Sbjct: 41600 ttactaaaattcaaaaaga 41582
>gb|AF288742.1|AF288742 Homo sapiens oxysterol binding protein 2 (OSBP2) gene, complete cds Length = 217292 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ttactaaaattcaaaaaga 91 ||||||||||||||||||| Sbjct: 31437 ttactaaaattcaaaaaga 31419
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaccaaccaacattggcaa 59 ||||||||||||||||||| Sbjct: 3930040 aaccaaccaacattggcaa 3930058
>gb|AC117479.4| Homo sapiens 3 BAC RP11-490P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145285 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 141 gcacagaaatactgataat 159 ||||||||||||||||||| Sbjct: 32359 gcacagaaatactgataat 32341
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaccaaccaacattggcaa 59 ||||||||||||||||||| Sbjct: 3929961 aaccaaccaacattggcaa 3929979
>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete sequence Length = 163949 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 149 atactgataatatccatac 167 ||||||||||||||||||| Sbjct: 28349 atactgataatatccatac 28367
>emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chromosome 15, complete sequence Length = 208835 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 ggttcatacacacaatgttgaca 118 |||| |||||||||||||||||| Sbjct: 63497 ggttgatacacacaatgttgaca 63475
>gb|AY830519.1| Popelairia conversii NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 acatcactcaattgaacca 45 ||||||||||||||||||| Sbjct: 254 acatcactcaattgaacca 272 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,848,064 Number of Sequences: 3902068 Number of extensions: 1848064 Number of successful extensions: 125973 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125819 Number of HSP's gapped (non-prelim): 154 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)