ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ508228.2|HVU508228 Hordeum vulgare subsp. vulgare mRNA for... 105 5e-20
2dbj|AB050957.1| Triticum aestivum arf mRNA for ADP-ribosylation ... 78 1e-11
3gb|AY291453.1| Notophthalmus viridescens microsatellite Nvi 3 se... 42 0.63
4ref|XM_459876.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 2.5
5ref|XM_776569.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.5
6emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 2.5
7gb|AF422153.1|AF422153 Strongylocentrotus purpuratus receptor fo... 40 2.5
8ref|NM_214636.1| Strongylocentrotus purpuratus receptor for egg ... 40 2.5
9emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in... 40 2.5
10emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chro... 40 2.5
11ref|NM_194976.1| Oryza sativa (japonica cultivar-group) putative... 38 9.9
12gb|AC097447.4| Oryza sativa (japonica cultivar-group) chromosome... 38 9.9
13gb|AC099606.13| Mus musculus chromosome 7, clone RP23-360N6, com... 38 9.9
14gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, comp... 38 9.9
15emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in ... 38 9.9
16emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chro... 38 9.9
17emb|AL031183.4|HS1168A5 Human DNA sequence from clone RP5-1168A5... 38 9.9
18emb|AL022336.1|HS78F24 Human DNA sequence from clone RP1-78F24 o... 38 9.9
19gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Can... 38 9.9
20gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold 38 9.9
21gb|AC080004.12| Homo sapiens 3q BAC RP11-307O15 (Roswell Park Ca... 38 9.9
22gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, com... 38 9.9
23gb|AF288742.1|AF288742 Homo sapiens oxysterol binding protein 2 ... 38 9.9
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
25gb|AC117479.4| Homo sapiens 3 BAC RP11-490P18 (Roswell Park Canc... 38 9.9
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.9
27emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chr... 38 9.9
28emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chro... 38 9.9
29gb|AY830519.1| Popelairia conversii NADH dehydrogenase subunit 2... 38 9.9

>emb|AJ508228.2|HVU508228 Hordeum vulgare subsp. vulgare mRNA for ADP-ribosylation factor
           1-like protein
          Length = 934

 Score =  105 bits (53), Expect = 5e-20
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                
Query: 115 gacaaagtaaaccttgtaaaaccacggcacagaaatactgataatatccatac 167
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gacaaagtaaaccttgtaaaaccacggcacagaaatactgataatatccatac 857



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>dbj|AB050957.1| Triticum aestivum arf mRNA for ADP-ribosylation factor, complete
           cds
          Length = 972

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                       
Query: 53  ttggcaaccgcacctcaatcttactaaaattcaaaaagacaggggttcatacacacaatg 112
           ||||||||| ||  |||||||| |||||| |||||| || ||||||||| ||||||| ||
Sbjct: 950 ttggcaaccacaattcaatcttgctaaaactcaaaacgataggggttcagacacacattg 891

                                      
Query: 113 ttgacaaagtaaaccttgtaaaaccac 139
           | |||| | ||||||||||||||||||
Sbjct: 890 tcgacacattaaaccttgtaaaaccac 864



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>gb|AY291453.1| Notophthalmus viridescens microsatellite Nvi 3 sequence
          Length = 559

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 99  tcatacacacaatgttgacaaagta 123
           |||||||||||| ||||||||||||
Sbjct: 384 tcatacacacaaagttgacaaagta 408



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>ref|XM_459876.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E13684g)
            partial mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 108  caatgttgacaaagtaaaccttgt 131
            ||||| ||||||||||||||||||
Sbjct: 1855 caatgatgacaaagtaaaccttgt 1832



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>ref|XM_776569.1| PREDICTED: Strongylocentrotus purpuratus similar to Polycystic
           kidney disease and receptor for egg jelly related
           protein precursor (PKD and REJ homolog) (LOC576242),
           partial mRNA
          Length = 3050

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 agaaatactgataatatcca 164
           ||||||||||||||||||||
Sbjct: 156 agaaatactgataatatcca 137



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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
               hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 108     caatgttgacaaagtaaaccttgt 131
               ||||| ||||||||||||||||||
Sbjct: 1028978 caatgatgacaaagtaaaccttgt 1029001



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>gb|AF422153.1|AF422153 Strongylocentrotus purpuratus receptor for egg jelly 3 protein
           (REJ3) mRNA, complete cds
          Length = 8739

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 agaaatactgataatatcca 164
           ||||||||||||||||||||
Sbjct: 244 agaaatactgataatatcca 225



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>ref|NM_214636.1| Strongylocentrotus purpuratus receptor for egg jelly 3 (REJ3), mRNA
          Length = 8739

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 agaaatactgataatatcca 164
           ||||||||||||||||||||
Sbjct: 244 agaaatactgataatatcca 225



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>emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in linkage group 16,
              complete sequence
          Length = 235236

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    gcacagaaatactgataatatcca 164
              ||||| ||||||||||||||||||
Sbjct: 193380 gcacacaaatactgataatatcca 193403



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>emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chromosome 2, complete
             sequence
          Length = 99258

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   gacaaagtaaaccttgtaaaacca 138
             ||||||| ||||||||||||||||
Sbjct: 53912 gacaaagaaaaccttgtaaaacca 53935



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>ref|NM_194976.1| Oryza sativa (japonica cultivar-group) putative pol polyprotein
            (OSJNBb0042K08.6), mRNA
          Length = 3852

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   aaccaaccaacattggcaa 59
            |||||||||||||||||||
Sbjct: 3376 aaccaaccaacattggcaa 3358



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>gb|AC097447.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0042K08, complete sequence
          Length = 117839

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    aaccaaccaacattggcaa 59
             |||||||||||||||||||
Sbjct: 44808 aaccaaccaacattggcaa 44826



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>gb|AC099606.13| Mus musculus chromosome 7, clone RP23-360N6, complete sequence
          Length = 193975

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 64     acctcaatcttactaaaattcaa 86
              |||||||||||||| ||||||||
Sbjct: 153794 acctcaatcttactgaaattcaa 153772



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>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence
          Length = 210347

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   tacacacaatgttgacaaa 120
             |||||||||||||||||||
Sbjct: 88433 tacacacaatgttgacaaa 88415



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>emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in linkage group 15,
              complete sequence
          Length = 185286

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 120    agtaaaccttgtaaaacca 138
              |||||||||||||||||||
Sbjct: 160598 agtaaaccttgtaaaacca 160580



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   agtaaaccttgtaaaacca 138
             |||||||||||||||||||
Sbjct: 72605 agtaaaccttgtaaaacca 72587



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>emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chromosome 1 Contains part
             of the NTNG1 gene for netrin G1, complete sequence
          Length = 122032

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 116   acaaagtaaaccttgtaaaacca 138
             ||||||||||| |||||||||||
Sbjct: 33112 acaaagtaaacgttgtaaaacca 33134



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>emb|AL031183.4|HS1168A5 Human DNA sequence from clone RP5-1168A5 on chromosome Xq23 Contains a
             novel pseudogene, complete sequence
          Length = 75522

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 103   acacacaatgttgacaaagtaaa 125
             |||||| ||||||||||||||||
Sbjct: 13271 acacactatgttgacaaagtaaa 13249



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>emb|AL022336.1|HS78F24 Human DNA sequence from clone RP1-78F24 on chromosome 22q12.1-12.3,
              complete sequence
          Length = 145414

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     ttactaaaattcaaaaaga 91
              |||||||||||||||||||
Sbjct: 129604 ttactaaaattcaaaaaga 129622



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>gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 158531

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   tcttactaaaattcaaaaa 89
            |||||||||||||||||||
Sbjct: 5151 tcttactaaaattcaaaaa 5133



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>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold
          Length = 347743

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     tactaaaattcaaaaagac 92
              |||||||||||||||||||
Sbjct: 286309 tactaaaattcaaaaagac 286291



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>gb|AC080004.12| Homo sapiens 3q BAC RP11-307O15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 206162

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 73   ttactaaaattcaaaaaga 91
            |||||||||||||||||||
Sbjct: 7257 ttactaaaattcaaaaaga 7275



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>gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, complete sequence
          Length = 161629

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    ttactaaaattcaaaaaga 91
             |||||||||||||||||||
Sbjct: 41600 ttactaaaattcaaaaaga 41582



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>gb|AF288742.1|AF288742 Homo sapiens oxysterol binding protein 2 (OSBP2) gene, complete cds
          Length = 217292

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    ttactaaaattcaaaaaga 91
             |||||||||||||||||||
Sbjct: 31437 ttactaaaattcaaaaaga 31419



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 41      aaccaaccaacattggcaa 59
               |||||||||||||||||||
Sbjct: 3930040 aaccaaccaacattggcaa 3930058



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>gb|AC117479.4| Homo sapiens 3 BAC RP11-490P18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145285

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   gcacagaaatactgataat 159
             |||||||||||||||||||
Sbjct: 32359 gcacagaaatactgataat 32341



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 41      aaccaaccaacattggcaa 59
               |||||||||||||||||||
Sbjct: 3929961 aaccaaccaacattggcaa 3929979



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>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete
             sequence
          Length = 163949

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 149   atactgataatatccatac 167
             |||||||||||||||||||
Sbjct: 28349 atactgataatatccatac 28367



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>emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chromosome 15, complete
             sequence
          Length = 208835

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 96    ggttcatacacacaatgttgaca 118
             |||| ||||||||||||||||||
Sbjct: 63497 ggttgatacacacaatgttgaca 63475



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>gb|AY830519.1| Popelairia conversii NADH dehydrogenase subunit 2 (ND2) gene,
           complete cds; mitochondrial
          Length = 1041

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  acatcactcaattgaacca 45
           |||||||||||||||||||
Sbjct: 254 acatcactcaattgaacca 272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,848,064
Number of Sequences: 3902068
Number of extensions: 1848064
Number of successful extensions: 125973
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125819
Number of HSP's gapped (non-prelim): 154
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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