>BIOH_CHRVO (Q7NPW5) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 254

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 427 LWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           L++GA D I P+G  R++A+ LP    +E P A H
Sbjct: 198 LFYGARDAITPIGAGRWLAESLPDAVLYEFPQASH 232

>MPA51_PHAAQ (P56164) Major pollen allergen Pha a 5.1 precursor (Pha A 5) (Clone|
           28)
          Length = 320

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -3

Query: 440 GGCAPMAWRGGPHRAR 393
           GGC P+ WRGG HRAR
Sbjct: 300 GGCQPVVWRGGSHRAR 315

>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -2

Query: 432  CTYGMARRTSSC--PLASHGTSRRGCHG-------CSTMSCPRPGTSSPWPMAWGMSSSG 280
            C  G  +RT  C  P+  +G   R C G       C++  CP  G  SPW   WG  S  
Sbjct: 4716 CGGGARQRTRGCSDPVPQYGG--RKCEGSDVQSDFCNSDPCPTHGNWSPW-SGWGTCS-- 4770

Query: 279  RCCSG 265
            R C+G
Sbjct: 4771 RTCNG 4775

>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -2

Query: 408 TSSCPLASHGTSRRGCH-----GCSTMSCPRPGTSSPWPMAWGMSSS 283
           TSS P  S G      H     G  T   P+PGTS P P   G S+S
Sbjct: 514 TSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTS 560

>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1599

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 363 CHGCSTMSCPRPGTSSPWPMAWGMSSSGRCCSGK 262
           C  CS +  PR G  S     WGMS     C G+
Sbjct: 101 CFYCSKIKIPRKGIKSTLSNVWGMSKGRSVCEGE 134

>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1371

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 328 RPWAAHGTAPMAASARCTVRGQRAR*GPPRHAIGAHPPHRRGT 456
           R WAAHGT+P   S     RG+R R   P   +G     R+G+
Sbjct: 495 RRWAAHGTSPEDFSLTLGARGRRTR--SPSPTLGESLAPRKGS 535

>RP54_RHISN (P22881) RNA polymerase sigma-54 factor|
          Length = 525

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 170 KKLKHRSTKNSSTQKTGKHQTTSL*LTLASFFPEQHRPEDDIPHAIGHGEEVPGRG 337
           + + H    +S+T   G+   + L    A+ F +   P+ D P  +G  + +PG G
Sbjct: 79  ESVDHGDLYDSATTSPGERLRSELDADFANVFQDDTAPQRDAPELLGQWKSMPGAG 134

>XYLF_PSEPU (P23106) 2-hydroxymuconic semialdehyde hydrolase (EC 3.1.1.-)|
           (HMSH)
          Length = 281

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 421 HGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           HG ED I+P+  S  +AQ +P  Q H     GH
Sbjct: 223 HGREDRIIPLQASLTLAQWIPNAQLHVFGQCGH 255

>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 22/68 (32%), Positives = 26/68 (38%)
 Frame = -2

Query: 456 RSPAMRRMCTYGMARRTSSCPLASHGTSRRGCHGCSTMSCPRPGTSSPWPMAWGMSSSGR 277
           R+ A +  C  G A      PL S+ TS  G  G  T   P P  +SP   A       R
Sbjct: 160 RAGACKPSCA-GAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCASPSAAASSCCRRRR 218

Query: 276 CCSGKNEA 253
            CS    A
Sbjct: 219 ACSSPTTA 226

>POL_SIVMK (P05897) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1054

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 307 RPWGRGAR-PWAAHGTAPMAASARCTVRGQRAR*GPPRHAIG 429
           RPW  G   P   HG++   A A C+ RG         HA+G
Sbjct: 44  RPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVG 85

>BIOH_AZOSE (Q5NZF6) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 250

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 433 VHLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           V L HGA D ++P+  + ++A RLP  +       GH
Sbjct: 194 VQLIHGAGDALMPLAAAEWLATRLPDARLARFDDCGH 230

>GCSH_TROWT (P64215) Glycine cleavage system H protein|
          Length = 121

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -1

Query: 445 DEADV-----HLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGHLFPMADGMGDV 290
           DE+D+     H W   +D I  VG+++Y  ++L  + Y +LP+   L    + +G++
Sbjct: 3   DESDLVYSKEHEWVFIDDDIAWVGITKYAVKKLGDIVYIDLPSQDALIVQGECVGEI 59

>GCSH_TROW8 (P64216) Glycine cleavage system H protein|
          Length = 121

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -1

Query: 445 DEADV-----HLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGHLFPMADGMGDV 290
           DE+D+     H W   +D I  VG+++Y  ++L  + Y +LP+   L    + +G++
Sbjct: 3   DESDLVYSKEHEWVFIDDDIAWVGITKYAVKKLGDIVYIDLPSQDALIVQGECVGEI 59

>LRC25_MOUSE (Q8K1T1) Leucine-rich repeat-containing protein 25 precursor|
           (Monocyte and plasmacytoid-activated protein)
          Length = 297

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
 Frame = -2

Query: 402 SCPLASHGTSRRGCHGCSTMSCPRPGTSSP----------WPMAWGMSSSGRCCSGKNEA 253
           SC LAS    R+ C G   + C  P T +P           P +WG  + G   +G    
Sbjct: 121 SCGLASWYALRQNCSGQQQLLCLHPATEAPRNLSTFLQVSCPPSWGPGTIGALVAGTISL 180

Query: 252 SVS 244
           +V+
Sbjct: 181 AVA 183

>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (p36) (E29)
          Length = 404

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = -1

Query: 421 HGAEDLIVPVGLSRYIAQRLPWV-----QYHELP--TAGHLFPMADGMGDVILRTMLLG 266
           HG  D I  VGL+++I+  L WV      Y++L   T   + P+   +G+V+ R  ++G
Sbjct: 302 HGFNDAIAKVGLTKFISD-LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIG 359

>BIOH_NITEU (Q82SL8) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 252

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 433 VHLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           V L HG  D+I P G + ++ Q LP  +    P  GH
Sbjct: 199 VLLIHGRNDVITPAGAADWMQQHLPRARLVLFPHCGH 235

>GCSH_CAUCR (Q9A352) Glycine cleavage system H protein|
          Length = 121

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 430 HLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGHLFPMADGMGDV 290
           H W   E  +  VG++ Y A++L  V + E P AG +    +G+  V
Sbjct: 7   HEWVIVEGDVATVGITAYAAEQLGDVVFVETPEAGKVVKQGEGLAVV 53

>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 408

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -1

Query: 427 LWHGAEDLIVPVGLSRYIAQRLPWVQ--YH-----ELPTAGHLFPMADGMGDVILRTMLL 269
           L HG  D I  VG++++I+  L WV   YH      + T   + P+   +G+V+ R  ++
Sbjct: 304 LKHGFSDAIAKVGMTKFISD-LFWVGMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVI 362

Query: 268 G 266
           G
Sbjct: 363 G 363

>LYPD5_MOUSE (Q9D7Z7) Ly6/PLAUR domain-containing protein 5 precursor|
          Length = 256

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 354 CSTMSCPRPGTSSPWPMAWGMSSSGRCCSGK--NEASVS 244
           C   SC   GT+SPW     +   G CC G   N ASV+
Sbjct: 182 CHRPSCTTMGTTSPWT---SIDLQGYCCEGHLCNRASVT 217

>DHYS_AERPE (Q9YE72) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 292

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 296 GCHPQDDVARGKMKRVLARVMLSG---AFLSSVCYCFLCSC 183
           G HP++ V+ GK+K    RV++ G     L  + YC L  C
Sbjct: 251 GAHPREAVSWGKIKESSRRVVVYGDATITLPVIAYCLLHGC 291

>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = -1

Query: 427 LWHGAEDLIVPVGLSRYIAQRLPWV-----QYHELP--TAGHLFPMADGMGDVILRTMLL 269
           L HG  D I  VG++++I+  L WV      Y++L   T   + P+   +G+V+ R  ++
Sbjct: 303 LKHGFNDAIAKVGMTKFISD-LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVI 361

Query: 268 G 266
           G
Sbjct: 362 G 362

>PIP_MYCPN (P75092) Putative proline iminopeptidase (EC 3.4.11.5) (PIP)|
           (Prolyl aminopeptidase) (PAP)
          Length = 309

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 433 VHLWHGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           VHL HG  DL+ P+  +  + + LP +  +    AGH
Sbjct: 254 VHLIHGRFDLVCPLSQALELKRALPTLNLYVTNNAGH 290

>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (E29)
          Length = 414

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = -1

Query: 427 LWHGAEDLIVPVGLSRYIAQRLPWVQ--YH-----ELPTAGHLFPMADGMGDVILRTMLL 269
           L HG  D I  VGL++++   L WV   YH        T   + P+   +G+V+ R  ++
Sbjct: 310 LQHGFNDAIAKVGLTKFVTD-LFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVI 368

Query: 268 G 266
           G
Sbjct: 369 G 369

>CR1KA_BACTM (Q45715) Pesticidal crystal protein cry1Ka (Insecticidal|
           delta-endotoxin CryIK(a)) (Crystaline entomocidal
           protoxin) (137 kDa crystal protein)
          Length = 1215

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 330 PGTSSPWPMAWGMSSSGRC 274
           PGT SPWP + G+  SGRC
Sbjct: 807 PGTESPWPSS-GVYPSGRC 824

>LYPD5_HUMAN (Q6UWN5) Ly6/PLAUR domain containing protein 5 precursor|
          Length = 251

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 354 CSTMSCPRPGTSSPWPMAWGMSSSGRCCSG 265
           C   SC   GT+SPW     +   G CC G
Sbjct: 184 CHRPSCTTEGTTSPWT---AIDLQGSCCEG 210

>RSBQ_BACSU (O07015) Sigma factor sigB regulation protein rsbQ|
          Length = 269

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 415 AEDLIVPVGLSRYIAQRLPWVQYHELPTAGH 323
           A+D+I P  + +Y+ Q LP+    ++   GH
Sbjct: 217 ADDIIAPATVGKYMHQHLPYSSLKQMEARGH 247

>CBLB_MOUSE (Q3TTA7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b)
          Length = 982

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 281 PEDDIPHAIGHGEEVPGRGQLMVLHPWQP 367
           P++ +     HGE VP R Q M L  W P
Sbjct: 566 PDNRLSRHFHHGESVPSRDQPMPLEAWCP 594

>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)|
          Length = 780

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 292 HPPCHRPW-GRGARPWAAHGTAPMAASARCTVRGQRAR*GPPRHAIGAHP 438
           H   H P  G G  P A   +AP+ AS   T  G  A  GPP H + +HP
Sbjct: 539 HTVGHSPGPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPV-SHP 587

>GCSH_STRAW (Q82JI1) Glycine cleavage system H protein|
          Length = 125

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 430 HLW-HGAEDLIVPVGLSRYIAQRLPWVQYHELPTAGHLFPMADGMGDV 290
           H W  GAED +  VG++ + A  L  V Y +LP  G      +  G++
Sbjct: 13  HEWLSGAEDGVSTVGITEHAANALGDVVYVQLPEVGDTVTAGETCGEL 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,537,137
Number of Sequences: 219361
Number of extensions: 1327364
Number of successful extensions: 3929
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3929
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)