ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
2dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
3dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
7emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in l... 44 0.39
8dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.39
9dbj|AP000820.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.39
10gb|AY457577.1| Papilio macilentus voucher UASM 9900213 from Japa... 42 1.6
11gb|AY457572.1| Papilio bianor voucher UASM 9900099 from Taiwan c... 42 1.6
12emb|Z83819.1|HS146H21 Human DNA sequence from clone RP1-146H21 o... 42 1.6
13emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on ch... 42 1.6
14emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chr... 42 1.6
15emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 ... 42 1.6
16emb|AL808027.14| Mouse DNA sequence from clone RP23-161B9 on chr... 42 1.6
17dbj|AB192473.1| Papilio okinawensis mitochondrial CO1 gene for c... 42 1.6
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
19gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence 42 1.6
20gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence 42 1.6
21gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 42 1.6
22dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.6
23emb|AJ494839.1|SAU494839 Stigmatella aurantiaca partial sqs gene... 42 1.6
24gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 6.2
25gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome... 40 6.2
26gb|AY430222.1| Regalecus glesne recombination activating protein... 40 6.2
27gb|AY380535.1| Salvelinus malma recombination-activating protein... 40 6.2
28gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complet... 40 6.2
29gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosom... 40 6.2
30emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 6.2
31gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome... 40 6.2
32gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, com... 40 6.2
33gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete s... 40 6.2
34gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.2
35emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
36gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 6.2
37gb|AC092491.6| Homo sapiens 12 BAC RP11-125G9 (Roswell Park Canc... 40 6.2
38gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Canc... 40 6.2
39dbj|AK045440.1| Mus musculus adult male corpora quadrigemina cDN... 40 6.2
40dbj|AK044779.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 6.2
41ref|XM_391900.2| PREDICTED: Apis mellifera similar to CG8939-PA ... 40 6.2
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43gb|AY552034.1| Hypancistrus sp. CAC-2004 RAG1 gene, exon 3 and p... 40 6.2
44gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Ca... 40 6.2
45gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, comple... 40 6.2
46emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.2
47emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.2
48gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 ... 40 6.2
49emb|CT030140.12| Mouse DNA sequence from clone RP24-345D17 on ch... 40 6.2
50gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, comple... 40 6.2
51emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chro... 40 6.2
52gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome... 40 6.2
53emb|AL683893.26| Mouse DNA sequence from clone RP23-122N18 on ch... 40 6.2
54dbj|AP000867.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.2 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                            
Query: 312      atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
                |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 19614673 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 19614614

                                                                            
Query: 372      gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
                ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 19614613 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 19614554

                           
Query: 432      acatccgcctc 442
                ||  |||||||
Sbjct: 19614553 accgccgcctc 19614543
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                         
Query: 312   atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
             |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 80959 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 80900

                                                                         
Query: 372   gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
             ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 80899 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 80840

                        
Query: 432   acatccgcctc 442
             ||  |||||||
Sbjct: 80839 accgccgcctc 80829
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>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full
            insert sequence
          Length = 1405

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                        
Query: 312  atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
            |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119

                                                                        
Query: 372  gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
            ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059

                       
Query: 432  acatccgcctc 442
            ||  |||||||
Sbjct: 1058 accgccgcctc 1048
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>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full
            insert sequence
          Length = 1399

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                        
Query: 312  atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
            |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119

                                                                        
Query: 372  gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
            ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059

                       
Query: 432  acatccgcctc 442
            ||  |||||||
Sbjct: 1058 accgccgcctc 1048
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>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full
            insert sequence
          Length = 1391

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                        
Query: 312  atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
            |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 1179 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1120

                                                                        
Query: 372  gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
            ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1119 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1060

                       
Query: 432  acatccgcctc 442
            ||  |||||||
Sbjct: 1059 accgccgcctc 1049
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>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full
            insert sequence
          Length = 1409

 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                        
Query: 312  atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371
            |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| ||||
Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119

                                                                        
Query: 372  gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431
            ||||||| ||| || ||    |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059

                       
Query: 432  acatccgcctc 442
            ||  |||||||
Sbjct: 1058 accgccgcctc 1048
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>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14,
             complete sequence
          Length = 108341

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 384   gagaggccaacgggcacgatgaggtc 409
             |||||||| |||||||||||||||||
Sbjct: 24016 gagaggcccacgggcacgatgaggtc 24041
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>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
              sequence
          Length = 175731

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 72     atttaaagaagagacatgaatt 93
              ||||||||||||||||||||||
Sbjct: 172179 atttaaagaagagacatgaatt 172158
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>dbj|AP000820.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-644L4, complete
             sequence
          Length = 159644

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    atttaaagaagagacatgaatt 93
             ||||||||||||||||||||||
Sbjct: 85554 atttaaagaagagacatgaatt 85533
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>gb|AY457577.1| Papilio macilentus voucher UASM 9900213 from Japan cytochrome oxidase
            subunit I (COI) gene, partial cds; tRNA-Leu gene,
            complete sequence; and cytochrome oxidase subunit II
            (COII) gene, complete cds; mitochondrial
          Length = 2291

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   aaaaagtaaggatttaaagaa 81
            |||||||||||||||||||||
Sbjct: 1230 aaaaagtaaggatttaaagaa 1210
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>gb|AY457572.1| Papilio bianor voucher UASM 9900099 from Taiwan cytochrome oxidase
            subunit I (COI) gene, partial cds; tRNA-Leu gene,
            complete sequence; and cytochrome oxidase subunit II
            (COII) gene, complete cds; mitochondrial
          Length = 2293

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   aaaaagtaaggatttaaagaa 81
            |||||||||||||||||||||
Sbjct: 1232 aaaaagtaaggatttaaagaa 1212
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>emb|Z83819.1|HS146H21 Human DNA sequence from clone RP1-146H21 on chromosome Xq22 Contains
             the 3' end of the CSTF2 gene for cleavage stimulation
             factor (3' pre-RNA, subunit 2, 64kDa), the NOX1 gene for
             NADPH oxidase 1 and two heterogeneous nuclear
             ribonucleoprotein A1 (HNRPA1) pseudogenes, complete
             sequence
          Length = 66424

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   acgttgttgaaagaaattaaa 180
             |||||||||||||||||||||
Sbjct: 63166 acgttgttgaaagaaattaaa 63186
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>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the
             3' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), a novel gene, a novel gene (MGC26847), a novel
             gene (MGC11115), the NINJ1 gene for ninjurin 1 and three
             CpG islands, complete sequence
          Length = 163689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   acgttgttgaaagaaattaaa 180
             |||||||||||||||||||||
Sbjct: 88463 acgttgttgaaagaaattaaa 88443
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>emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chromosome 13 Contains a
            high-mobility group pseudogene, complete sequence
          Length = 162763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 160  acgttgttgaaagaaattaaa 180
            |||||||||||||||||||||
Sbjct: 1247 acgttgttgaaagaaattaaa 1267
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>emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 in linkage group 18,
             complete sequence
          Length = 139321

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   ttgttgaaagaaattaaaaca 183
             |||||||||||||||||||||
Sbjct: 90599 ttgttgaaagaaattaaaaca 90619
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>emb|AL808027.14| Mouse DNA sequence from clone RP23-161B9 on chromosome 2, complete
             sequence
          Length = 241914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   acacagaagcagcctctttgt 143
             |||||||||||||||||||||
Sbjct: 50212 acacagaagcagcctctttgt 50192
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>dbj|AB192473.1| Papilio okinawensis mitochondrial CO1 gene for cytochrome oxydase
            subunit 1, partial cds
          Length = 1408

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   aaaaagtaaggatttaaagaa 81
            |||||||||||||||||||||
Sbjct: 1199 aaaaagtaaggatttaaagaa 1179
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 398     cacgatgaggtcctccgcgccatgc 422
               |||||||| ||||||||||||||||
Sbjct: 4413078 cacgatgacgtcctccgcgccatgc 4413054
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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 160    acgttgttgaaagaaattaaa 180
              |||||||||||||||||||||
Sbjct: 181327 acgttgttgaaagaaattaaa 181347
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>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence
          Length = 165334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   acgttgttgaaagaaattaaa 180
             |||||||||||||||||||||
Sbjct: 21401 acgttgttgaaagaaattaaa 21421
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   ttgttgaaagaaattaaaaca 183
             |||||||||||||||||||||
Sbjct: 68604 ttgttgaaagaaattaaaaca 68584
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>dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-2N10, complete
            sequence
          Length = 51000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  ttgttgaaagaaattaaaaca 183
            |||||||||||||||||||||
Sbjct: 3548 ttgttgaaagaaattaaaaca 3568
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>emb|AJ494839.1|SAU494839 Stigmatella aurantiaca partial sqs gene for squalene synthase and
           cas gene for cycloartenol synthase, strain Sg a15
          Length = 3629

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 291 acatcccccatgccatcggccatgg 315
           |||||| ||||||||||||||||||
Sbjct: 347 acatccgccatgccatcggccatgg 323
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     ccatgccatcggccatgggg 317
               ||||||||||||||||||||
Sbjct: 2457248 ccatgccatcggccatgggg 2457267
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>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence
          Length = 245260

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     aagtaaggatttaaagaaga 83
              ||||||||||||||||||||
Sbjct: 160315 aagtaaggatttaaagaaga 160296
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>gb|AY430222.1| Regalecus glesne recombination activating protein 1 (RAG1) gene,
           partial cds
          Length = 1469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tgacatcccccatgccatcg 308
           ||||||||||||||||||||
Sbjct: 333 tgacatcccccatgccatcg 314
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>gb|AY380535.1| Salvelinus malma recombination-activating protein 1 (RAG1) gene,
           partial cds
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tgacatcccccatgccatcg 308
           ||||||||||||||||||||
Sbjct: 366 tgacatcccccatgccatcg 347
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>gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complete sequence
          Length = 169856

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   ttgaaagaaattaaaacaca 185
             ||||||||||||||||||||
Sbjct: 42427 ttgaaagaaattaaaacaca 42446
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>gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosome 12, complete
             sequence
          Length = 172126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    aagtaaggatttaaagaaga 83
             ||||||||||||||||||||
Sbjct: 13957 aagtaaggatttaaagaaga 13976
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 286    ggatgacatcccccatgccatcggccat 313
              ||||||||||| ||||||||| ||||||
Sbjct: 125311 ggatgacatccgccatgccataggccat 125338
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>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ttaaaacacaggagcacaaa 195
              ||||||||||||||||||||
Sbjct: 112050 ttaaaacacaggagcacaaa 112069
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>gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, complete sequence
          Length = 219711

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    agagacatgaattagacatagagt 104
             ||||||||| ||||||||||||||
Sbjct: 29810 agagacatgtattagacatagagt 29787
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>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
          Length = 126187

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    cacaaaaaacagtagcacac 209
              ||||||||||||||||||||
Sbjct: 104476 cacaaaaaacagtagcacac 104495
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     gcacatccgcctcatcgccg 449
               ||||||||||||||||||||
Sbjct: 2921333 gcacatccgcctcatcgccg 2921314
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>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08,
              complete sequence
          Length = 148860

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gatttaaagaagagacatga 90
              ||||||||||||||||||||
Sbjct: 105697 gatttaaagaagagacatga 105678
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gttgttgaaagaaattaaaa 181
             ||||||||||||||||||||
Sbjct: 43499 gttgttgaaagaaattaaaa 43480
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>gb|AC092491.6| Homo sapiens 12 BAC RP11-125G9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 103308

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   acacaggagcacaaaaaaca 200
             ||||||||||||||||||||
Sbjct: 74098 acacaggagcacaaaaaaca 74117
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>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    taaagaagagacatgaatta 94
             ||||||||||||||||||||
Sbjct: 75010 taaagaagagacatgaatta 74991
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>dbj|AK045440.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230119K15
           product:unclassifiable, full insert sequence
          Length = 1283

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  aagtaaggatttaaagaaga 83
           ||||||||||||||||||||
Sbjct: 514 aagtaaggatttaaagaaga 533
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>dbj|AK044779.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930104C18 product:unclassifiable, full insert
           sequence
          Length = 1282

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  aagtaaggatttaaagaaga 83
           ||||||||||||||||||||
Sbjct: 514 aagtaaggatttaaagaaga 533
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>ref|XM_391900.2| PREDICTED: Apis mellifera similar to CG8939-PA (LOC408348), mRNA
          Length = 2588

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 166  ttgaaagaaattaaaacaca 185
            ||||||||||||||||||||
Sbjct: 1335 ttgaaagaaattaaaacaca 1354
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 71       gatttaaagaagagacatga 90
                ||||||||||||||||||||
Sbjct: 31408889 gatttaaagaagagacatga 31408870
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>gb|AY552034.1| Hypancistrus sp. CAC-2004 RAG1 gene, exon 3 and partial cds
          Length = 938

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tgacatcccccatgccatcg 308
           ||||||||||||||||||||
Sbjct: 366 tgacatcccccatgccatcg 347
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>gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172303

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     taagagcaagaaaaagtaag 70
              ||||||||||||||||||||
Sbjct: 146222 taagagcaagaaaaagtaag 146241
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>gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, complete sequence
          Length = 204267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ttgttgaaagaaattaaaac 182
             ||||||||||||||||||||
Sbjct: 48500 ttgttgaaagaaattaaaac 48481
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>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete
             sequence
          Length = 88090

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gatttaaagaagagacatga 90
             ||||||||||||||||||||
Sbjct: 75143 gatttaaagaagagacatga 75124
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
             sequence
          Length = 131195

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gatttaaagaagagacatga 90
             ||||||||||||||||||||
Sbjct: 28886 gatttaaagaagagacatga 28867
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>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
              sequence
          Length = 302073

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ttgaaagaaattaaaacaca 185
              ||||||||||||||||||||
Sbjct: 282277 ttgaaagaaattaaaacaca 282258
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>emb|CT030140.12| Mouse DNA sequence from clone RP24-345D17 on chromosome 12, complete
             sequence
          Length = 198163

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    acatgaattagacatagagt 104
             ||||||||||||||||||||
Sbjct: 19658 acatgaattagacatagagt 19639
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>gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, complete sequence
          Length = 177034

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gaaaaagtaaggatttaaag 79
             ||||||||||||||||||||
Sbjct: 45219 gaaaaagtaaggatttaaag 45200
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>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete
              sequence
          Length = 241014

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     agagacatgaattagacatagagt 104
              ||||||||| ||||||||||||||
Sbjct: 129745 agagacatgtattagacatagagt 129722
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>gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome 17, complete sequence
          Length = 212184

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    agagacatgaattagacatagagt 104
             ||||||||| ||||||||||||||
Sbjct: 67264 agagacatgtattagacatagagt 67241
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>emb|AL683893.26| Mouse DNA sequence from clone RP23-122N18 on chromosome 4, complete
            sequence
          Length = 204841

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 56   gcaagaaaaagtaaggatttaaag 79
            |||||||||||||| |||||||||
Sbjct: 2641 gcaagaaaaagtaatgatttaaag 2618
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>dbj|AP000867.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684B2, complete
              sequences
          Length = 199999

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     cttcttttacaaggttatat 51
              ||||||||||||||||||||
Sbjct: 157376 cttcttttacaaggttatat 157357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,745,439
Number of Sequences: 3902068
Number of extensions: 4745439
Number of successful extensions: 96346
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96159
Number of HSP's gapped (non-prelim): 181
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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