>PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC|
           3.6.1.-)
          Length = 796

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 219 RAPVPFVPSPDSAA----PPNHVVALPFPSFLHTHSPPERKKKATYVHRTLPPNATTNLE 386
           R P P  P P+ +A    PP+  V  P P       PPE+KKK  +  +  P     ++E
Sbjct: 24  RPPTPPPPPPEDSAAPPPPPDTSVPPPPPEDAPPAPPPEKKKKVGWGAKR-PAATPLSVE 82

Query: 387 EFVR 398
           E VR
Sbjct: 83  ELVR 86

>DYN3_RAT (Q08877) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)|
          Length = 848

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
 Frame = +3

Query: 159 SPPASVVSNQNLTRR----KKRHARAPVPFVPSPD--SAAPPNHVVALPFPSFLHTH--- 311
           SPP S  + + LT      +   +R P P +PSP   S APP      P P F ++    
Sbjct: 759 SPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSY 818

Query: 312 -SPPERKKKATYVHRTLP 362
            +PP+   + T    ++P
Sbjct: 819 GAPPQVPSRPTRAPPSVP 836

>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Ufd2a)
          Length = 1173

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 330
           +PRS   P    P     +LP+ F+    RT HQ E+
Sbjct: 349 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 385

>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 330
           +PRS   P    P     +LP+ F+    RT HQ E+
Sbjct: 478 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 514

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPE 323
           RRR  SPP +            R  R+P P  P P    PP    +   P    T SPP 
Sbjct: 558 RRRSPSPPPA------------RRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPP 605

Query: 324 RKKKATYVHRTLPP 365
           R++  +   R  PP
Sbjct: 606 RRRSPS-PRRYSPP 618

>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFV--PSPDSAAPPNHVVALPFPSFLHTHSP 317
           RR +      V S +  T   K  ++ P+P    P P S APP    A P PS  +  S 
Sbjct: 282 RRSERGAVEGVSSTKIQTENHKSPSQPPLPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSA 341

Query: 318 PERKKKATYVHRTLPP 365
           P   KKAT      PP
Sbjct: 342 P---KKATSAPAPPPP 354

>ACES_BUNFA (Q92035) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)|
          Length = 606

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
 Frame = +3

Query: 186 QNLTRRKKRH----ARAPVPFVPSPDSAAPPNHVVALPFPSFLHTH----SPPERKKKAT 341
           + L+RR  R+    AR   P  P+  S A P +  + P    L+T      P  R +   
Sbjct: 494 KELSRRMMRYWANFARTGNPTDPADKSGAWPTYTASQPQYVQLNTQPLATQPSLRAQICA 553

Query: 342 YVHRTLPP--NATTNLEEFVRSW 404
           + +  LP   NAT N+EE  R W
Sbjct: 554 FWNHFLPKLLNATDNIEEAERQW 576

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
 Frame = +3

Query: 102  MVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSP-DSAAPPNHVV 278
            M Q+K     P   +     PP  +   Q++T+        P P +P+P    APP  +V
Sbjct: 777  MAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPP-IPAPLPPQAPPKPLV 835

Query: 279  ALPFPSFLHTHSP--------------PERKKKATYVHRTLPPNATT 377
             +P P+   T +P              P  KK+  +    +PP+  T
Sbjct: 836  TIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPPSPPT 882

>VP61_NPVAC (Q03209) 61 kDa protein|
          Length = 543

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +3

Query: 84  NYNHHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHAR----------APVP 233
           NYN    +++  P++LP+  RR  V  PA+      + R + +  +          +PVP
Sbjct: 138 NYN----IELPPPQALPRS-RRPSVVQPAAPAPVPTIVREQTKPEQIIPAAPPPPPSPVP 192

Query: 234 FVPSPDSAAPPNHVVALPFP 293
            +P+P    PP+     P P
Sbjct: 193 NIPAPPPPPPPSMSELPPAP 212

>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 150 RDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSP 317
           + +S P S  ++ +L+      +R+  P    P      +H  A PFP  L  HSP
Sbjct: 385 QSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSP 440

>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)|
          Length = 1297

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +3

Query: 219  RAPVPFVPSPDSAAPPNHVVALPF----PSFLHTHSPPE 323
            R P+P  P P    PP H +  PF    P   H H  P+
Sbjct: 1174 RDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHPHRDPD 1212

>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPE 323
           R R  SP    V N++  R+ +  +R+P P+    +S +PP      P+     + SPP 
Sbjct: 249 RERVASPENGAVRNRS-PRKGRGESRSPPPYEKRRESRSPP------PYEKRRESRSPPP 301

Query: 324 RKKK 335
            +K+
Sbjct: 302 YEKR 305

>CPXQ_SACER (P48635) Cytochrome P450 113A1 (Erythromycin B/D C-12 hydroxylase)|
          Length = 397

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 210 RHARAPVPFVPSPDSAAPPNHVV--ALPFPSFLHTHSPPERKKKATYVHRTLPPNATTNL 383
           RHA        +   ++ P  V+  A P P  +H   PPE +     V     P   ++L
Sbjct: 41  RHADVQTVLRDTATFSSDPTRVIEGASPTPGMIHEIDPPEHRALRKVVSSAFTPRTISDL 100

Query: 384 EEFVR 398
           E  +R
Sbjct: 101 EPRIR 105

>EXTN_DAUCA (P06599) Extensin precursor|
          Length = 306

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
 Frame = +3

Query: 93  HHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHA-------RAPVPFVPSPD 251
           HH+  + K+P       + +   PP  V   ++    K   A       ++P P  P   
Sbjct: 175 HHYKYKYKSPPPPTPVYKYKSPPPPTPVYKYKSPPPPKHSPAPVHHYKYKSPPPPTPVYK 234

Query: 252 SAAPPNHVVALPFPSFLH------THSPPERKKKATYVHRTLPP 365
           S  PP H    P P + +       HSPP       Y +++ PP
Sbjct: 235 SPPPPEHSPPPPTPVYKYKSPPPPMHSPP--PPTPVYKYKSPPP 276

>LRP2_HHV1F (P17589) Latency-related protein 2|
          Length = 107

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +3

Query: 213 HARAPVPFVPSPDSAAPPNHVVALP---FPSFLHTHSPP----ERKKKATYVHRTLP 362
           H+ AP P   +P  A P +H   LP    P+  H+H+PP     R+ K T V+   P
Sbjct: 15  HSHAP-PLPRTPTPAHPHSHAPPLPRTPTPTHPHSHAPPRSIQHRQGKDTKVNLYFP 70

>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000|
          Length = 395

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 96  HHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHV 275
           +H   I+N     ++ RR D   P +   ++N  RR++  A  P P  P      PP H+
Sbjct: 200 YHEEWIRNNARANERNRRND--RPRNNDRSRNFERRRENMAGGPPPQRPPMGGPPPPPHI 257

Query: 276 -VALPFPSFLHTHSPP 320
             + P P  +   +PP
Sbjct: 258 GGSAPPPPHMGGSAPP 273

>STK11_HUMAN (Q15831) Serine/threonine-protein kinase 11 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase LKB1) (NY-REN-19
           antigen)
          Length = 433

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 198 RRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLH 305
           R+K   A APVP  PSPD+      +  +P+   LH
Sbjct: 310 RKKHPPAEAPVPIPPSPDTKDRWRSMTVVPYLEDLH 345

>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase B) (CANP B) [Contains: Calpain B catalytic
           subunit 1; Calpain B catalytic subunit 2]
          Length = 925

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 225 PVPFVPSPDSAAPPNHV--VALPFPSFLHTHSPPE 323
           P+P+ P P S AP +++   ALP+P    T  PPE
Sbjct: 167 PMPYAPMPTSPAPQHNIGFPALPYP----TAPPPE 197

>SURF6_MOUSE (P70279) Surfeit locus protein 6|
          Length = 355

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 164 AGLRGEQSKLDEKEKKTCTSPGPVRPLT*QRRSTKSCRCPSLSFLPSHALPTRKKKKSNV 343
           A L  + + L +  KK C  PGP R     +RST   R        +   P +K+KK+  
Sbjct: 2   ASLLAKDTYLQDLAKKICAQPGPER-----QRSTWGVRTKGSE---AAGAPKKKRKKTQK 53

Query: 344 RTP 352
           ++P
Sbjct: 54  KSP 56

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +3

Query: 123 RSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFL 302
           RS     + R  S P+         +  KRH+ +P P  P   S+ PP    A   P   
Sbjct: 652 RSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRR 711

Query: 303 HTHSPPER 326
            + SP  R
Sbjct: 712 QSPSPSTR 719



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
 Frame = +3

Query: 114 KNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVP-----FVPSPD----SAAPP 266
           ++P   P   RRR  +PP    +     RR+    R   P     + PSP     +A+PP
Sbjct: 559 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP 618

Query: 267 ----NHVVALPFPSFLHTHSPPERKKKATYVHRTLP 362
                     P P    +HSPP +++ +    R  P
Sbjct: 619 PPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP 654

>STD1_YEAST (Q02794) Protein STD1 (Glucose repression modulator MSN3)|
           (Suppressor of fluoride sensitivity 3)
          Length = 444

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 156 VSPPASVVSNQNLTRRK-KRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKK 332
           VSPP +   NQ L +RK KRH   P    P+ D+    N V ++ F S L    P   ++
Sbjct: 3   VSPPPATARNQVLGKRKSKRHDENPKNVQPNADTEM-TNSVPSIGFNSNL----PHNNQE 57

Query: 333 KATYVHRTLPPNA 371
             T  H  L  N+
Sbjct: 58  INTPNHYNLSSNS 70

>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 162 PPASVVSN----QNLTRRKKRHARAPVPFVP----SPDSAAPPNHVVALPFPSFLHTHSP 317
           PPA V       Q   RR++R  +AP    P    SP SAAPP+    LP    +   +P
Sbjct: 776 PPAGVAQARAGVQVAPRRQRRLEKAPTGSDPDAKDSPKSAAPPSRSKVLPLAPAM---AP 832

Query: 318 PERKKKATY 344
           P     A +
Sbjct: 833 PAAANPANH 841

>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed|
          Length = 596

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = +3

Query: 90  NHHHMVQIKNPRSLPKQCRRRDVSPPASV---VSN------QNLTRRKKRHARAPVPFVP 242
           +HH +    + +  P+Q      SPPAS+   ++N         T  +++      P + 
Sbjct: 99  HHHQLPHHPHHQHHPQQQPSPQTSPPASISFSITNILSDRFGKATAEQQQQPHPQPPAIR 158

Query: 243 SPDSAAPPNHVVALPFPS-FLH-THSP 317
            P S  P +  V LP+P   LH  H P
Sbjct: 159 EPISPGPIHPAVLLPYPQHVLHPAHHP 185

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 264 PNHVVALPFPSFLHTHSPPERKKKATYVHRTLPP 365
           PNHVV L     L   SP E  K AT    + PP
Sbjct: 19  PNHVVFLRLREGLKNQSPAEADKPATSTSPSCPP 52

>LRFN3_MOUSE (Q8BLY3) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 3 precursor
          Length = 626

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNH-VVALPFPSFLHTHSP 317
           + +  +P +SV S  N        A  PVP  P+P+ AAP  H VV L    +  +H P
Sbjct: 572 KAKATAPVSSVCSQTN-------GALGPVPSAPAPEPAAPRAHTVVQLDCEPWGPSHEP 623

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
 Frame = +3

Query: 114 KNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVP-----FVPSPD----SAAPP 266
           ++P   P   RRR  +PP    +     RR+    R   P     + PSP     +A+PP
Sbjct: 573 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP 632

Query: 267 ----NHVVALPFPSFLHTHSPPERKKKATYVHRTLP 362
                     P P    +HSPP +++ +    R  P
Sbjct: 633 PPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP 668

>NOG1_MOUSE (Q99ME9) Nucleolar GTP-binding protein 1 (Chronic renal failure|
           gene protein) (GTP-binding protein NGB)
          Length = 633

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 90  NHHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTR 200
           N H+ VQ +  RS+ ++ +R +  PP+S   +++ +R
Sbjct: 535 NAHYAVQARRSRSVTRKRKREESVPPSSTARSRSCSR 571


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,605,445
Number of Sequences: 219361
Number of extensions: 1432380
Number of successful extensions: 4556
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4492
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)