Clone Name | rbart43f03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 118 caaattacatgaaaaatttaacttcaaa 145 ||||||||||||||| |||||||||||| Sbjct: 554386 caaattacatgaaaagtttaacttcaaa 554359
>gb|AC073616.17| Homo sapiens 12 BAC RP3-361K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128936 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 atccaaattacatgaaaaattt 136 |||||||||||||||||||||| Sbjct: 85427 atccaaattacatgaaaaattt 85406
>gb|AC006840.17|AC006840 Homo sapiens chromosome 4 clone C0422C23, complete sequence Length = 201657 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 aaaatttaacttcaaatggatc 151 |||||||||||||||||||||| Sbjct: 181059 aaaatttaacttcaaatggatc 181038
>dbj|AB046365.1| Bombyx mori mRNA for laminin, partial cds Length = 3470 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 tgcgatgataaaacaggagcct 235 |||||||||||||||||||||| Sbjct: 518 tgcgatgataaaacaggagcct 539
>gb|AC025447.5| Homo sapiens chromosome 5 clone CTD-2085H24, complete sequence Length = 117543 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 attacatgaaaaatttaactt 141 ||||||||||||||||||||| Sbjct: 72466 attacatgaaaaatttaactt 72446
>emb|BX530092.15| Mouse DNA sequence from clone RP23-45N17 on chromosome X, complete sequence Length = 136088 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tggagaaagatgtctagttgg 197 ||||||||||||||||||||| Sbjct: 3773 tggagaaagatgtctagttgg 3793
>gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J7, complete sequence Length = 149307 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 attacatgaaaaatttaactt 141 ||||||||||||||||||||| Sbjct: 86436 attacatgaaaaatttaactt 86456
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 ggcggtggccaggtgaagtcg 310 ||||||||||||||||||||| Sbjct: 314538 ggcggtggccaggtgaagtcg 314518
>gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E23 map 14q24.3, complete sequence Length = 192389 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 123 tacatgaaaaatttaacttcaaatggatc 151 |||||||||||||||||| ||||||||| Sbjct: 183300 tacatgaaaaatttaactcaaaatggatc 183272
>emb|Z81126.2|CET22E6 Caenorhabditis elegans Cosmid T22E6, complete sequence Length = 13219 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atgaaaaatttaacttcaaa 145 |||||||||||||||||||| Sbjct: 32 atgaaaaatttaacttcaaa 51
>emb|Z50176.1|CEC09G1 Caenorhabditis elegans Cosmid C09G1, complete sequence Length = 41033 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atgaaaaatttaacttcaaa 145 |||||||||||||||||||| Sbjct: 40961 atgaaaaatttaacttcaaa 40980
>emb|AL161899.21| Human DNA sequence from clone RP11-418I10 on chromosome 13, complete sequence Length = 159981 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tatgtaatcagacatcaagt 175 |||||||||||||||||||| Sbjct: 151613 tatgtaatcagacatcaagt 151594
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tcacatgaggctgcgatgat 222 |||||||||||||||||||| Sbjct: 980844 tcacatgaggctgcgatgat 980825
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtccgtggccggcggtgccgtcca 420 |||||| ||||||||||||||||| Sbjct: 237083 gtccgttgccggcggtgccgtcca 237106
>gb|DQ087286.1| Saccharopolyspora pogona BusF (busF), BusG (busG), BusH (busH), BusI (busI), BusJ (busJ), BusK (busK), BusL (busL), BusM (busM), BusN (busN), BusO (busO), BusP (busP), BusQ (busQ), BusR (busR), and BusS (busS) genes, complete cds Length = 36538 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ccggcaggcggtggccaggt 303 |||||||||||||||||||| Sbjct: 11362 ccggcaggcggtggccaggt 11343
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtccgtggccggcggtgccgtcca 420 |||||| ||||||||||||||||| Sbjct: 779099 gtccgttgccggcggtgccgtcca 779122
>gb|AC016907.6| Homo sapiens BAC clone RP11-439P4 from 2, complete sequence Length = 202827 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaagaaatggccatttatta 22 |||||||||||||||||||| Sbjct: 181833 aaagaaatggccatttatta 181852
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gccgagcccgaggtcgaact 449 |||||||||||||||||||| Sbjct: 215856 gccgagcccgaggtcgaact 215875
>gb|AC154420.2| Mus musculus BAC clone RP24-212L9 from 14, complete sequence Length = 159591 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agacatcaagtgtggagaaa 184 |||||||||||||||||||| Sbjct: 135375 agacatcaagtgtggagaaa 135394
>emb|Z92775.2|CEC06H5 Caenorhabditis elegans Cosmid C06H5, complete sequence Length = 41299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aaattacatgaaaaatttaa 138 |||||||||||||||||||| Sbjct: 22074 aaattacatgaaaaatttaa 22093
>emb|AL139296.4|CNS01DXF Human chromosome 14 DNA sequence BAC C-2504D12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209710 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 gtccgtggccggcggtgccg 416 |||||||||||||||||||| Sbjct: 108353 gtccgtggccggcggtgccg 108334
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtccgtggccggcggtgccgtcca 420 |||||| ||||||||||||||||| Sbjct: 323274 gtccgttgccggcggtgccgtcca 323297
>gb|AC171898.2| Capitella capitata clone JGIBGZA-37B13, complete sequence Length = 32964 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 atttattacaacattgctctactc 38 ||||||||||||||||||| |||| Sbjct: 21468 atttattacaacattgctcgactc 21491
>emb|BX005180.6| Mouse DNA sequence from clone RP23-414F9 on chromosome X, complete sequence Length = 148346 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 atgaaaaatttaacttcaaa 145 |||||||||||||||||||| Sbjct: 108186 atgaaaaatttaacttcaaa 108167 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,479,990 Number of Sequences: 3902068 Number of extensions: 3479990 Number of successful extensions: 65551 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65231 Number of HSP's gapped (non-prelim): 320 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)