Clone Name | rbart43f02 |
---|---|
Clone Library Name | barley_pub |
>ASNS_MAIZE (P49094) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 84.3 bits (207), Expect = 2e-16 Identities = 37/41 (90%), Positives = 39/41 (95%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHN 373 SARETVPWGPSIACSTPAAIEWV QWKASNDPSGR I+SH+ Sbjct: 509 SARETVPWGPSIACSTPAAIEWVEQWKASNDPSGRFISSHD 549
>ASNS_ASPOF (P31752) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (AS) Length = 589 Score = 53.5 bits (127), Expect = 3e-07 Identities = 26/42 (61%), Positives = 29/42 (69%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 370 SAR TVP GPSIACST AIEW A+W + DPSGR +D Sbjct: 509 SARFTVPGGPSIACSTAKAIEWDARWSNNLDPSGRAALGVHD 550
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 52.4 bits (124), Expect = 7e-07 Identities = 24/35 (68%), Positives = 26/35 (74%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 391 SAR TVP GPS+ACST AIEW A W + DPSGR Sbjct: 510 SARLTVPGGPSVACSTEKAIEWDASWSNNLDPSGR 544
>ASNS_ORYSA (Q43011) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 590 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/42 (54%), Positives = 28/42 (66%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 370 +AR TVP GPS+ACST A+EW A W + DPSGR +D Sbjct: 509 AARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHD 550
>ASNS2_PEA (P19252) Asparagine synthetase, root [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 582 Score = 50.8 bits (120), Expect = 2e-06 Identities = 23/42 (54%), Positives = 28/42 (66%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 370 SAR TVP GP++ACST A+EW A W + DPSGR +D Sbjct: 509 SARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVHD 550
>ASNS1_LOTJA (P49092) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 585 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 391 SAR TVP GP++ACST A+EW A W + DPSGR Sbjct: 509 SARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGR 543
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/42 (52%), Positives = 27/42 (64%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 370 SA+ TVP GPS+ACST A+ W A W + DPSGR +D Sbjct: 509 SAKLTVPGGPSVACSTATAVAWDASWSKNLDPSGRAATGVHD 550
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 49.3 bits (116), Expect = 6e-06 Identities = 22/40 (55%), Positives = 27/40 (67%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASH 376 SA E VP GPS+ACS+ AIEW +K +DPSGR + H Sbjct: 509 SAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVH 548
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/35 (60%), Positives = 25/35 (71%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 391 SAR TVP G ++ACST A+EW A W + DPSGR Sbjct: 509 SARLTVPGGATVACSTAKAVEWDASWSNNMDPSGR 543
>ASNS_BRAOL (P49091) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/35 (60%), Positives = 25/35 (71%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 391 SAR TVP G ++ACST A+EW A W + DPSGR Sbjct: 510 SARLTVPGGATVACSTAKAVEWDASWSNNMDPSGR 544
>ASNS2_LOTJA (P49093) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 585 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/42 (57%), Positives = 27/42 (64%) Frame = -3 Query: 495 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 370 SAR +VP G SIACST AIEW A W + DPSGR +D Sbjct: 509 SARLSVPGGASIACSTEKAIEWDAAWSNNLDPSGRAALGVHD 550
>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1246 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +3 Query: 147 PAAAPMAYGSSVRGHAHTHTHPP 215 PAAAP GSS +G A TH HPP Sbjct: 270 PAAAPST-GSSAKGLAATHHHPP 291
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +3 Query: 417 STGPPTRWPPACCTRCSDPTAPSPSP 494 S P WPP CC S PTA + P Sbjct: 65 SCSPAPTWPPLCCYPQSRPTASAAGP 90
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +3 Query: 189 HAHTHTHPPRPNQLARAATASTGPE 263 H H H HPP P Q RAA A E Sbjct: 48 HHHHHHHPPPPQQPQRAAAAEEEDE 72
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +3 Query: 189 HAHTHTHPPRPNQLARAATASTGPE 263 H H H HPP P Q RAA A E Sbjct: 48 HHHHHHHPPPPQQPQRAAAAEEEDE 72
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +3 Query: 414 PSTGPPTRWPPACCTRCSDPTAPSPSPT 497 P+ GPP PP + P AP P+PT Sbjct: 18 PAPGPPPPPPPPAPLQLQPPPAPPPNPT 45
>NBEAL_HUMAN (Q6ZS30) Neurobeachin-like 1 (Amyotrophic lateral sclerosis 2| chromosomal region candidate gene 17 protein) Length = 1314 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +2 Query: 377 WEAMSRPEGSLEAFHWATH-SMAAGVLHAML 466 +E P G+++ FH+ TH S +AGV+H ++ Sbjct: 790 YENFEDPMGTIDKFHYGTHYSNSAGVMHYLI 820
>KCC2B_HUMAN (Q13554) Calcium/calmodulin-dependent protein kinase type II beta| chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM kinase II beta subunit) (CaMK-II beta subunit) Length = 664 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = +3 Query: 414 PSTGPPTRWPPACCTRCSDPTAPSPSPT 497 P P +WPP C PT P P PT Sbjct: 506 PEAEAPRQWPPP----CPSPTIPGPLPT 529 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,924,669 Number of Sequences: 219361 Number of extensions: 648753 Number of successful extensions: 3151 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3133 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)