Clone Name | rbart43e12 |
---|---|
Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 343 bits (173), Expect = 2e-91 Identities = 210/225 (93%) Strand = Plus / Minus Query: 11 caaacttggaagacaaattggaattccacggtaacacggacgatgggaaaagagggnnnn 70 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 1075 caaacttggaagacaaattggaattccacggtaacagggacgatgggaagagagggccgc 1016 Query: 71 nnnnatcaaaaagaaattccctcaaaacacgcagtttgctcttcgggttgggatggcatc 130 |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 1015 ccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatggcatc 956 Query: 131 tttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgaccacctg 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 955 tttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgaccacctg 896 Query: 191 gtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 895 gtggtagatggcggccagcgcggcgccgatgaaggggccgaccca 851
>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence Length = 1154 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 834 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 775 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 774 gccagggcggcgccgatgaaggggccgaccca 743
>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence Length = 698 Score = 95.6 bits (48), Expect = 6e-17 Identities = 69/76 (90%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 ||||||| |||||||| ||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct: 425 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 366 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 365 tgaaggggccgaccca 350
>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker Length = 824 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Plus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 244 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 303 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 304 gccagggcggcgccgatgaaggggccgaccca 335
>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker Length = 763 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 533 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 474 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 473 gccagggcggcgccgatgaaggggccgaccca 442
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 95.6 bits (48), Expect = 6e-17 Identities = 69/76 (90%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 ||||||| |||||||| ||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct: 856 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 797 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 796 tgaaggggccgaccca 781
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 95.6 bits (48), Expect = 6e-17 Identities = 69/76 (90%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 ||||||| |||||||| ||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct: 913 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 854 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 853 tgaaggggccgaccca 838
>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete cds Length = 1153 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 984 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 925 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 924 gccagggcggcgccgatgaaggggccgaccca 893
>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete cds Length = 1296 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 979 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 920 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 919 gccagggcggcgccgatgaaggggccgaccca 888
>gb|AY103580.1| Zea mays PCO072544 mRNA sequence Length = 1633 Score = 95.6 bits (48), Expect = 6e-17 Identities = 81/92 (88%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| Sbjct: 1308 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 1249 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| |||||||||||||||||||| ||||| Sbjct: 1248 gccagggcggcgccgatgaaggggccgaccca 1217
>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds Length = 1280 Score = 87.7 bits (44), Expect = 1e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 144 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcg 203 |||||||| ||| || ||||||| ||||| |||||||||| |||||||||||| ||||| Sbjct: 935 gcagcttaagacctgctcttgaacgggatggctctgatgatcacctggtggtagatggca 876 Query: 204 gccagcgcggcgccgatgaaggggcccaccca 235 ||||| || ||||| ||||||||||| ||||| Sbjct: 875 gccagggcagcgccaatgaaggggccgaccca 844
>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin Length = 1291 Score = 79.8 bits (40), Expect = 4e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 188 ctggtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 1291 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgaccca 1244
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS Length = 1139 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 896 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 837 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 836 agggcagcgccaacgaagggaccaaccca 808
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 27065653 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 27065594 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 27065593 agggcagcgccaacgaagggaccaaccca 27065565
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 37302 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 37243 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 37242 agggcagcgccaacgaagggaccaaccca 37214
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 118855 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 118796 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 118795 agggcagcgccaacgaagggaccaaccca 118767
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 869 agggcagcgccaacgaagggaccaaccca 841
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 984 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 925 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 924 agggcagcgccaacgaagggaccaaccca 896
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 869 agggcagcgccaacgaagggaccaaccca 841
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 924 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 865 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 864 agggcagcgccaacgaagggaccaaccca 836
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel protein, complete cds Length = 1116 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 147 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggcc 206 ||||| ||| || |||||||||||||||| ||||||| |||||||||||| ||||| ||| Sbjct: 927 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 868 Query: 207 agcgcggcgccgatgaaggggcccaccca 235 || || ||||| | |||||| || ||||| Sbjct: 867 agggcagcgccaacgaagggaccaaccca 839
>ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 838 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 779 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 778 tgaaggggccaaccca 763
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 28669 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28610 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 28609 tgaaggggccaaccca 28594
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 28021443 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28021384 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 28021383 tgaaggggccaaccca 28021368
>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds Length = 423 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 ||||||| ||||| || ||||||| |||||||||||| |||||||| || || ||||| | Sbjct: 412 tcttgaacgggatggccctgatgatcacctggtggtagatggcggctagggcagcgccaa 353 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 352 tgaaggggccgaccca 337
>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence Length = 1163 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 915 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 856 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 855 tgaaggggccaaccca 840
>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full insert sequence Length = 1164 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 916 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 857 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 856 tgaaggggccaaccca 841
>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full insert sequence Length = 1167 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 918 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 859 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 858 tgaaggggccaaccca 843
>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence Length = 1462 Score = 71.9 bits (36), Expect = 9e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || || |||||||||||||||||||| ||||| || || || ||||| | Sbjct: 1214 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 1155 Query: 220 tgaaggggcccaccca 235 |||||||||| ||||| Sbjct: 1154 tgaaggggccaaccca 1139
>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds Length = 539 Score = 69.9 bits (35), Expect = 3e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 145 cagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcgg 204 ||||||| ||| || ||||||| ||||| || ||||||| |||||||||||| ||||| | Sbjct: 359 cagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggcag 300 Query: 205 ccagcgcggcgccgatgaaggggcccaccca 235 |||| || || || ||||||||||| ||||| Sbjct: 299 ccagggcagcaccaatgaaggggccgaccca 269
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 174 gctctgatgaccacctggtggtaaatggcggccagcgcggcgccgatgaaggggcccacc 233 |||||||||| |||||||||||| | ||| ||||| |||||||| | ||||||||||||| Sbjct: 927 gctctgatgatcacctggtggtagacggctgccagggcggcgccaacgaaggggcccacc 868 Query: 234 ca 235 || Sbjct: 867 ca 866
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds Length = 1285 Score = 63.9 bits (32), Expect = 2e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 ||||||| |||||||| ||||| |||||| |||||| || || |||||||| ||||||| Sbjct: 945 tcttgaaggggatcgccctgatcaccaccacgtggtagatcgccgccagcgccgcgccga 886 Query: 220 tgaaggggcccaccca 235 |||| || |||||||| Sbjct: 885 tgaacggtcccaccca 870
>gb|AF141643.1|AF141643 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-1 (PIP1-1) mRNA, complete cds Length = 1115 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 154 acttggtcttgaatgggatcgctctgatgaccacctggtggta 196 |||||| |||||| || || ||||||||||||||||||||||| Sbjct: 887 acttggacttgaagggaatggctctgatgaccacctggtggta 845
>gb|AF188843.1|AF188843 Vitis vinifera cultivar Pinot Noir plasma membrane aquaporin (PIP1a) mRNA, complete cds Length = 1129 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 157 tggtcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgc 216 |||||||||||||||| |||||||| || | ||||||||| | ||| || || || || | Sbjct: 907 tggtcttgaatgggatggctctgattactatctggtggtacaaggcagcaagagcagctc 848 Query: 217 cgatgaaggggcccaccca 235 | |||||||| |||||||| Sbjct: 847 caatgaagggtcccaccca 829
>gb|AY547266.2| Ipomoea nil aquaporin-like protein (AQP1) mRNA, complete cds Length = 1189 Score = 48.1 bits (24), Expect = 0.012 Identities = 33/36 (91%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgaccacctggtggta 196 |||||||||||| |||||||| || ||||||||||| Sbjct: 937 cttgaatgggatggctctgatcacaacctggtggta 902
>gb|AY611006.1| Xerophyta humilis isolate HC398 PIP1 aquaporin mRNA, partial cds Length = 502 Score = 46.1 bits (23), Expect = 0.049 Identities = 32/35 (91%) Strand = Plus / Minus Query: 162 ttgaatgggatcgctctgatgaccacctggtggta 196 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 176 ttgaaggggattgctctgatgacgacctggtggta 142
>emb|Y08962.1|OSTRAMBPR O.sativa mRNA for transmembrane protein Length = 1179 Score = 46.1 bits (23), Expect = 0.049 Identities = 38/43 (88%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggc 202 |||||||||| || || ||||| ||| |||||||||||||||| Sbjct: 930 tcttgaatggaattgccctgataaccccctggtggtaaatggc 888
>emb|AJ314584.1|POC314584 Posidonia oceanica mRNA for putative plasma membrane intrinsic protein (pip1a gene) Length = 1139 Score = 46.1 bits (23), Expect = 0.049 Identities = 35/39 (89%) Strand = Plus / Minus Query: 158 ggtcttgaatgggatcgctctgatgaccacctggtggta 196 |||||||||||| || ||||||||||| | ||||||||| Sbjct: 874 ggtcttgaatggaattgctctgatgactatctggtggta 836
>emb|AJ843992.1| Plantago major partial mRNA for aquaporin 2 (aqp2 gene) Length = 1089 Score = 46.1 bits (23), Expect = 0.049 Identities = 32/35 (91%) Strand = Plus / Minus Query: 154 acttggtcttgaatgggatcgctctgatgaccacc 188 ||||| ||||||||||||| |||||||| |||||| Sbjct: 847 acttgttcttgaatgggatagctctgatcaccacc 813
>gb|DQ149581.1| Xerophyta humilis PIP1 aquaporin mRNA, complete cds Length = 1262 Score = 46.1 bits (23), Expect = 0.049 Identities = 32/35 (91%) Strand = Plus / Minus Query: 162 ttgaatgggatcgctctgatgaccacctggtggta 196 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 936 ttgaaggggattgctctgatgacgacctggtggta 902
>gb|U77297.1|OSU77297 Oryza sativa transmembrane protein mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.049 Identities = 38/43 (88%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggc 202 |||||||||| || || ||||| ||| |||||||||||||||| Sbjct: 930 tcttgaatggaattgccctgataaccccctggtggtaaatggc 888
>dbj|AB002149.1| Nicotiana excelsior mRNA for water channel protein, complete cds Length = 1064 Score = 46.1 bits (23), Expect = 0.049 Identities = 38/43 (88%) Strand = Plus / Minus Query: 156 ttggtcttgaatgggatcgctctgatgaccacctggtggtaaa 198 |||||||||||||| || |||||||||| | ||||||||||| Sbjct: 890 ttggtcttgaatggaatggctctgatgattatctggtggtaaa 848
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 atggcggccagcgcggcgccga 219 |||||||||||||||||||||| Sbjct: 310344 atggcggccagcgcggcgccga 310365
>emb|AJ699398.2| Chenopodium rubrum mRNA for aquaporin PIP1 (PIP1 gene) Length = 1163 Score = 44.1 bits (22), Expect = 0.19 Identities = 37/42 (88%) Strand = Plus / Minus Query: 155 cttggtcttgaatgggatcgctctgatgaccacctggtggta 196 ||||| |||||||||||| |||||||| || | ||||||||| Sbjct: 969 cttggacttgaatgggatggctctgataacaatctggtggta 928
>emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intrinsic protein (pip4 gene) Length = 1364 Score = 42.1 bits (21), Expect = 0.77 Identities = 39/45 (86%) Strand = Plus / Minus Query: 191 gtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 |||||| |||||||| || || || |||||||||||||| ||||| Sbjct: 906 gtggtagatggcggcaagagcagcaccgatgaaggggccaaccca 862
>gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein ZmPIP1-5 mRNA, complete cds Length = 1338 Score = 42.1 bits (21), Expect = 0.77 Identities = 39/45 (86%) Strand = Plus / Minus Query: 191 gtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 |||||| |||||||| || || || |||||||||||||| ||||| Sbjct: 897 gtggtagatggcggcaagagcagcaccgatgaaggggccaaccca 853
>gb|AY107675.1| Zea mays PCO112712 mRNA sequence Length = 791 Score = 42.1 bits (21), Expect = 0.77 Identities = 39/45 (86%) Strand = Plus / Minus Query: 191 gtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 |||||| |||||||| || || || |||||||||||||| ||||| Sbjct: 330 gtggtagatggcggcaagagcagcaccgatgaaggggccaaccca 286
>ref|NM_130159.2| Arabidopsis thaliana PIP1B; water channel AT2G45960 (PIP1B) mRNA, complete cds Length = 1259 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 988 cttgaatgggatggctctgatgac 965
>gb|AF499725.1| Thellungiella halophila plasma membrane intrinsic protein 1B-like protein mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 671 cttgaatgggattgctctgatgac 648
>emb|Z17424.1|ATORFA Arabidopsis thaliana mRNA for PIP1b protein Length = 1064 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 908 cttgaatgggatggctctgatgac 885
>emb|X95640.1|BOMIPBTCP B.oleracea mRNA for transmembrane channel protein (mipB) Length = 1114 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>emb|X95639.1|BOMIPATCP B.oleracea mRNA for transmembrane channel protein (mipA) Length = 1104 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 886 cttgaatgggatggctctgatgac 863
>gb|AY091254.1| Arabidopsis thaliana putative aquaporin protein (At2g45960) mRNA, complete cds Length = 892 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 849 cttgaatgggatggctctgatgac 826
>emb|X68293.1|ATRNATPR A.thaliana mRNA for transmembrane protein A Length = 1105 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 903 cttgaatgggatggctctgatgac 880
>gb|AY063931.1| Arabidopsis thaliana putative aquaporin, plasma membrane intrinsic protein 1B (At2g45960) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete sequence Length = 165954 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 catctttctttgtagcagcagctt 150 |||||||| ||||||||||||||| Sbjct: 108793 catctttcattgtagcagcagctt 108770
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tggcggccagcgcggcgccg 218 |||||||||||||||||||| Sbjct: 4507898 tggcggccagcgcggcgccg 4507879
>gb|AC091691.7| Homo sapiens chromosome 18, clone RP11-47G4, complete sequence Length = 164314 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aaaaagaaattccctcaaaa 97 |||||||||||||||||||| Sbjct: 105502 aaaaagaaattccctcaaaa 105483
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 15226 cttgaatgggatggctctgatgac 15249
>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence Length = 163936 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ttggaagacaaattggaatt 35 |||||||||||||||||||| Sbjct: 159892 ttggaagacaaattggaatt 159873
>gb|AF141899.1|AF141899 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-3 (PIP1-3) mRNA, complete cds Length = 1159 Score = 40.1 bits (20), Expect = 3.0 Identities = 62/76 (81%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || ||||||||||| | ||| ||||| ||||| || || || || || | Sbjct: 909 tcttgaatggaatggctctgatgactatctgatggtacatggcagcaagagcagctccaa 850 Query: 220 tgaaggggcccaccca 235 |||| || |||||||| Sbjct: 849 tgaaaggtcccaccca 834
>gb|AF141898.1|AF141898 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-2 (PIP1-2) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgaccacctggtggta 196 |||||||||||| |||||||| || | ||||||||| Sbjct: 911 cttgaatgggatggctctgattactatctggtggta 876
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ttggaagacaaattggaatt 35 |||||||||||||||||||| Sbjct: 50150 ttggaagacaaattggaatt 50131
>dbj|AK222086.1| Arabidopsis thaliana mRNA for aquaporin, partial cds, clone: RAFL22-84-C08 Length = 318 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 111 cttgaatgggatggctctgatgac 88
>gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205), mRNA sequence Length = 1913 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AF299051.1|AF299051 Brassica oleracea aquaporin PIP1b2 mRNA, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 868 cttgaatgggatggctctgatgac 845
>gb|AF299050.1|AF299050 Brassica oleracea aquaporin PIP1b1 mRNA, complete cds Length = 1084 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 885 cttgaatgggatggctctgatgac 862
>emb|BX820173.1|CNS0A8G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS86ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1084 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 889 cttgaatgggatggctctgatgac 866
>emb|BX819664.1|CNS0A8JV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 522 cttgaatgggatggctctgatgac 499
>emb|BX820969.1|CNS0A7WJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1036 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 894 cttgaatgggatggctctgatgac 871
>emb|BX819791.1|CNS0A7WA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 881 cttgaatgggatggctctgatgac 858
>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence Length = 200430 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 catctttctttgtagcagcagctt 150 |||||||| ||||||||||||||| Sbjct: 139931 catctttcattgtagcagcagctt 139908
>gb|AY048294.1| Arabidopsis thaliana At2g45960/F4I18.6 mRNA, complete cds Length = 1052 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AF188844.1|AF188844 Vitis vinifera cultivar Pinot Noir plasma membrane aquaporin (PIP1b) mRNA, complete cds Length = 1119 Score = 40.1 bits (20), Expect = 3.0 Identities = 62/76 (81%) Strand = Plus / Minus Query: 160 tcttgaatgggatcgctctgatgaccacctggtggtaaatggcggccagcgcggcgccga 219 |||||||||| || ||||||||||| | ||| ||||| ||||| || || || || || | Sbjct: 910 tcttgaatggaatggctctgatgactatctgctggtacatggcagcaagagcagctccaa 851 Query: 220 tgaaggggcccaccca 235 |||| || |||||||| Sbjct: 850 tgaacggtcccaccca 835
>emb|AJ243257.1|SNA243257 Streptomyces natalensis plasmid pSNA1 including spda, kora, spdb2 and rep genes Length = 9367 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tggcggccagcgcggcgccg 218 |||||||||||||||||||| Sbjct: 4015 tggcggccagcgcggcgccg 3996
>emb|Z17399.1|ATORFB Arabidopsis thaliana PIP1b gene Length = 2773 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 1547 cttgaatgggatggctctgatgac 1524
>gb|AF004293.1|AF004293 Brassica rapa aquaporin (MOD) mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds Length = 1071 Score = 40.1 bits (20), Expect = 3.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 188 ctggtggtaaatggcggccagcgcggcgccgatgaaggggcccaccca 235 ||||||||||| | ||||| |||||||||||||| ||||| ||||| Sbjct: 814 ctggtggtaaaccgtggccacggcggcgccgatgaacgggccaaccca 767
>dbj|AB030695.1| Raphanus sativus PAQ1b mRNA for plasma membrane aquaporin 1b, complete cds Length = 1053 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgaatgggatcgctctgatgac 184 |||||||||||| ||||||||||| Sbjct: 870 cttgaatgggatggctctgatgac 847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,103,700 Number of Sequences: 3902068 Number of extensions: 2103700 Number of successful extensions: 35959 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35743 Number of HSP's gapped (non-prelim): 216 length of query: 236 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 214 effective length of database: 17,147,199,772 effective search space: 3669500751208 effective search space used: 3669500751208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)