ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Z585B_PONPY (Q5RB30) Zinc finger protein 585B 30 1.4
2Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 30 1.8
3EURL_MOUSE (Q9D7G4) Protein EURL homolog 30 2.3
4GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 s... 28 5.1

>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 118 WMHLDLQEKN*FRDEVLKTRRH 183
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WQHLDLSQRNLYRDVMLETYSH 62



to top

>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 118 WMHLDLQEKN*FRDEVLKTRRH 183
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WRHLDLSQRNLYRDVMLETYSH 62



to top

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   KANWSFIYSMEKLLQLATQCNKPSRHAL 90
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120



to top

>GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 subunit|
          Length = 364

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 22  FIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLDL 135
           FI SM    QL  + NK +R  +KQ   IFKT +H DL
Sbjct: 234 FIVSMSDYDQLDPEDNKYNR--MKQSYEIFKTIVHSDL 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,781,967
Number of Sequences: 219361
Number of extensions: 311739
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top