ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 196 4e-47
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 196 4e-47
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
4dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
5gb|AY106034.1| Zea mays PCO099903 mRNA sequence 117 3e-23
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
7dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
8dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predic... 56 9e-05
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
11dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
12dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
13dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
14dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
15ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
16gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
18gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
19gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, compl... 48 0.023
20gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, comp... 48 0.023
21ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.091
22dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
23dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
24dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
25gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, comp... 44 0.36
26gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 44 0.36
27gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.4
28gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Canc... 42 1.4
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
30dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
31dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
32gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, compl... 42 1.4
33emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chr... 42 1.4
34gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome ... 40 5.6
35ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.6
36gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete s... 40 5.6
37emb|Z49271.2|RHDVGNS RHDV-AST89 p254 gene, ORF2 DNA and VP60 gen... 40 5.6
38emb|Z29514.1|RHDVCGS RHDV-SD complete genome 40 5.6
39ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.6
40gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 5.6
41gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, co... 40 5.6
42gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 5.6
43gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, comp... 40 5.6
44gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 5.6
45gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, compl... 40 5.6
46gb|AF128273.1|AF128273 Streptomyces griseus putative deoxyhexose... 40 5.6
47emb|AL772313.12| Mouse DNA sequence from clone RP23-128J10 on ch... 40 5.6
48emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chr... 40 5.6
49emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 5.6
50gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 5.6
51dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.6
52emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chr... 40 5.6
53dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.6 
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                         
Query: 204   ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
             ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 99376 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 99317

                                                                         
Query: 264   atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
             ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||||
Sbjct: 99316 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 99257

                                                                         
Query: 324   aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
             ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 99256 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 99197

                        
Query: 384   atctcgccggc 394
             |||||||||||
Sbjct: 99196 atctcgccggc 99186
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Plus

                                                                            
Query: 204      ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
                ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 32780165 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32780224

                                                                            
Query: 264      atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
                ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||||
Sbjct: 32780225 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32780284

                                                                            
Query: 324      aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
                ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 32780285 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32780344

                           
Query: 384      atctcgccggc 394
                |||||||||||
Sbjct: 32780345 atctcgccggc 32780355
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Plus

                                                                            
Query: 204      ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
                ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 32870675 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32870734

                                                                            
Query: 264      atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
                ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||||
Sbjct: 32870735 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32870794

                                                                            
Query: 324      aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
                ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 32870795 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32870854

                           
Query: 384      atctcgccggc 394
                |||||||||||
Sbjct: 32870855 atctcgccggc 32870865
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>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full
            insert sequence
          Length = 1408

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 204  ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
            ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 1197 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 1138

                                                                        
Query: 264  atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
            ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||||
Sbjct: 1137 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 1078

                                                                        
Query: 324  aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
            ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 1077 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 1018

                       
Query: 384  atctcgccggc 394
            |||||||||||
Sbjct: 1017 atctcgccggc 1007
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>gb|AY106034.1| Zea mays PCO099903 mRNA sequence
          Length = 687

 Score =  117 bits (59), Expect = 3e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                       
Query: 276 cggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcagaagaagttgtgg 335
           |||||||||| | | |||||||| ||  ||||||||||||||||||||||||||||||  
Sbjct: 684 cggtcgtcgacgcgcggcacctcgagcgaccggtgcggctcgccgcagaagaagttgtac 625

                                                                      
Query: 336 gagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcggggatctcgccggc 394
           ||||||||||||||||||||||  |||||  |||||| |||||| || |||||||||||
Sbjct: 624 gagtaggtgaagttcttgaggtgcggcaggccgcagacgctctccggtatctcgccggc 566
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 155/191 (81%)
 Strand = Plus / Plus

                                                                           
Query: 204     ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
               ||||| |||||||||||  ||| |||||| ||| | || ||||||||||| |  ||||||
Sbjct: 4061878 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 4061937

                                                                           
Query: 264     atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
               ||||||||||| |||||||||| | || | |     |||||||| | |||||||||||||
Sbjct: 4061938 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 4061997

                                                                           
Query: 324     aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
               ||| ||||||  ||||||||||||||| ||||    |||||||||||||| | ||| |||
Sbjct: 4061998 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 4062057

                          
Query: 384     atctcgccggc 394
               || | ||||||
Sbjct: 4062058 atgtggccggc 4062068
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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 155/191 (81%)
 Strand = Plus / Plus

                                                                         
Query: 204   ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 263
             ||||| |||||||||||  ||| |||||| ||| | || ||||||||||| |  ||||||
Sbjct: 54736 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 54795

                                                                         
Query: 264   atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 323
             ||||||||||| |||||||||| | || | |     |||||||| | |||||||||||||
Sbjct: 54796 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 54855

                                                                         
Query: 324   aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 383
             ||| ||||||  ||||||||||||||| ||||    |||||||||||||| | ||| |||
Sbjct: 54856 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 54915

                        
Query: 384   atctcgccggc 394
             || | ||||||
Sbjct: 54916 atgtggccggc 54926
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>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full
            insert sequence
          Length = 1302

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  ctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagat 373
            ||||||||||||| ||||||  ||||||||||||||| ||||    ||||||||||||||
Sbjct: 1018 ctcgccgcagaagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagat 959

                                 
Query: 374  gctctcggggatctcgccggc 394
             | ||| ||||| | ||||||
Sbjct: 958  cccctccgggatgtggccggc 938
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>ref|NM_192605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
            |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 1048 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1001



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1131 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1073
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 310      gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
                |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 23282455 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 23282408



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 227      gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
                |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 23282538 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 23282480



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 310     gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
               |||||||||||  |||||||||||  | | |||||||||||||||||
Sbjct: 4179330 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 4179376
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1103C09
          Length = 163996

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
            |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 8153 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 8106



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 8236 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 8178
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 310   gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
             |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 69197 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 69150



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227   gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
             |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 69280 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 69222
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>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
            insert sequence
          Length = 1985

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
            |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 1107 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1060



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1190 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1132
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>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
            insert sequence
          Length = 2042

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 357
            |||||||||||  || |||||||| ||||||||||||||||| |||||
Sbjct: 1106 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1059



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 285
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1189 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1131
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>ref|XM_476068.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1245

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 310 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
           |||||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 988 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 942
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 310    gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
              |||||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 124528 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 124574
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 310     gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
               |||||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 4756523 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 4756569
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 310   gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
             |||||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 28931 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 28977
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>gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, complete sequence
          Length = 159521

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 76    gtgtgtgcatttttacccttttct 99
             ||||||||||||||||||||||||
Sbjct: 67673 gtgtgtgcatttttacccttttct 67696
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>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence
          Length = 198235

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 76     gtgtgtgcatttttacccttttct 99
              ||||||||||||||||||||||||
Sbjct: 144264 gtgtgtgcatttttacccttttct 144287
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>ref|XM_550392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2207

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
            |||||||||||  |||||||||||  | | |||||||||||||||||
Sbjct: 1084 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 1038
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 310   gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
             |||||||||||  |||||||||||  | | |||||||||||||||||
Sbjct: 17297 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 17343
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0406H10
          Length = 156419

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 310    gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
              |||||||||||  |||||||||||  | | |||||||||||||||||
Sbjct: 126301 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 126347
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>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full
            insert sequence
          Length = 2207

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 310  gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 356
            |||||||||||  |||||||||||  | | |||||||||||||||||
Sbjct: 1084 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 1038
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>gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, complete sequence
          Length = 171806

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 49   aaaaataaacatcacagtatat 70
            ||||||||||||||||||||||
Sbjct: 7462 aaaaataaacatcacagtatat 7441
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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 49    aaaaataaacatcacagtatat 70
             ||||||||||||||||||||||
Sbjct: 76400 aaaaataaacatcacagtatat 76379
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 391     cggcaagcatgttgttggcga 411
               |||||||||||||||||||||
Sbjct: 2053437 cggcaagcatgttgttggcga 2053417
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>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205825

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     ttgtttccgaaaaataaacat 60
              |||||||||||||||||||||
Sbjct: 119861 ttgtttccgaaaaataaacat 119841
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 338      gtaggtgaagttcttgaggttgggcagcgcgcagatg 374
                ||||||||||||||||||| |  |||||| |||||||
Sbjct: 29239579 gtaggtgaagttcttgaggctctgcagcgagcagatg 29239543
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0018H04
          Length = 142053

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 338  gtaggtgaagttcttgaggttgggcagcgcgcagatg 374
            ||||||||||||||||||| |  |||||| |||||||
Sbjct: 2377 gtaggtgaagttcttgaggctctgcagcgagcagatg 2341
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>dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G10, full
           insert sequence
          Length = 1447

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 338 gtaggtgaagttcttgaggttgggcagcgcgcagatg 374
           ||||||||||||||||||| |  |||||| |||||||
Sbjct: 550 gtaggtgaagttcttgaggctctgcagcgagcagatg 514
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>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 31    gttatttctttgtttccgaaaaata 55
             ||||||||||||||||| |||||||
Sbjct: 54178 gttatttctttgtttcctaaaaata 54154
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>emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chromosome 2, complete
             sequence
          Length = 184736

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    agtatataccaagtgtgtgca 84
             |||||||||||||||||||||
Sbjct: 42684 agtatataccaagtgtgtgca 42704
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>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence
          Length = 220643

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   agtaggtgaagttcttgagg 356
             ||||||||||||||||||||
Sbjct: 22675 agtaggtgaagttcttgagg 22656
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>ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (152.t00006)
           partial mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 26  ccattgttatttctttgttt 45
           ||||||||||||||||||||
Sbjct: 343 ccattgttatttctttgttt 362
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>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aataaacatcacagtatata 71
             ||||||||||||||||||||
Sbjct: 27856 aataaacatcacagtatata 27875
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>emb|Z49271.2|RHDVGNS RHDV-AST89 p254 gene, ORF2 DNA and VP60 gene, genomic RNA
          Length = 7437

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  ggctcgccgcagaagaagtt 331
            ||||||||||||||||||||
Sbjct: 3788 ggctcgccgcagaagaagtt 3769
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>emb|Z29514.1|RHDVCGS RHDV-SD complete genome
          Length = 7437

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  ggctcgccgcagaagaagtt 331
            ||||||||||||||||||||
Sbjct: 3788 ggctcgccgcagaagaagtt 3769
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>ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus similar to Lon protease
           homolog, mitochondrial precursor (Lon protease-like
           protein) (LONP) (LONHs) (LOC576598), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 acagctacaaattccagtat 138
           ||||||||||||||||||||
Sbjct: 914 acagctacaaattccagtat 895
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cgcggcacactgtgcaggcg 207
               ||||||||||||||||||||
Sbjct: 1202900 cgcggcacactgtgcaggcg 1202881
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>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence
          Length = 143552

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   cagcaaacagctacaaattccagt 136
             |||||||||||||||||| |||||
Sbjct: 98610 cagcaaacagctacaaataccagt 98587
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>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   ggccgctggtcggggcgtccggcg 263
             |||||| |||||||||||||||||
Sbjct: 58430 ggccgccggtcggggcgtccggcg 58407
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>gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, complete sequence
          Length = 115793

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   cactgtgcaggcggccggtggagg 218
             ||||||||||||| ||||||||||
Sbjct: 56115 cactgtgcaggcgaccggtggagg 56092
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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 113  cagcaaacagctacaaattccagt 136
            |||||||||||||||||| |||||
Sbjct: 1522 cagcaaacagctacaaataccagt 1499
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>gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, complete sequence
          Length = 195195

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    agtaggtgaagttcttgagg 356
              ||||||||||||||||||||
Sbjct: 101933 agtaggtgaagttcttgagg 101914
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>gb|AF128273.1|AF128273 Streptomyces griseus putative deoxyhexose reductase (grsB),
           TDP-glucose synthase homolog (grsD), and
           TDP-glucose-4,6-dehydratase homolog (grsE) genes,
           complete cds
          Length = 4062

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 gctggtcggggcgtccggcg 263
           ||||||||||||||||||||
Sbjct: 834 gctggtcggggcgtccggcg 815
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>emb|AL772313.12| Mouse DNA sequence from clone RP23-128J10 on chromosome 2, complete
              sequence
          Length = 176872

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     aataaacatcacagtatata 71
              ||||||||||||||||||||
Sbjct: 117950 aataaacatcacagtatata 117931
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>emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chromosome 17, complete
             sequence
          Length = 226188

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   agtaggtgaagttcttgagg 356
             ||||||||||||||||||||
Sbjct: 78450 agtaggtgaagttcttgagg 78469
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aataaacatcacagtatata 71
             ||||||||||||||||||||
Sbjct: 39774 aataaacatcacagtatata 39755
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>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
              sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aaataaacatcacagtatat 70
              ||||||||||||||||||||
Sbjct: 169352 aaataaacatcacagtatat 169371
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>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134,
             complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   aagcatgttgttggcgacat 414
             ||||||||||||||||||||
Sbjct: 26776 aagcatgttgttggcgacat 26757
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>emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chromosome 4, complete
             sequence
          Length = 114436

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aatccattgttatttctttg 42
             ||||||||||||||||||||
Sbjct: 15428 aatccattgttatttctttg 15447
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>dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L13, complete
            sequences
          Length = 96727

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   caatccattgttatttcttt 41
            ||||||||||||||||||||
Sbjct: 6551 caatccattgttatttcttt 6532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,434,442
Number of Sequences: 3902068
Number of extensions: 3434442
Number of successful extensions: 71102
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70708
Number of HSP's gapped (non-prelim): 391
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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