ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart43e01 |
|---|---|
| Clone Library Name | barley_pub |
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 33.1 bits (74), Expect = 0.28 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = +2 Query: 242 DEASDAEHPKADP--LRAPPGHAALPDVHLDGEVDGERPEGDG 364 ++A A PKA P RAPPG A PD G R EG G Sbjct: 605 EDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGPGAREEGAG 647
>COL14_CAEEL (P18834) Cuticle collagen 14| Length = 345 Score = 31.2 bits (69), Expect = 1.1 Identities = 28/81 (34%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Frame = +2 Query: 128 FGREGNWCRWC*SAAERLVHFERFDNVGDGARCGGDGHDEASDAEHPKADPLRAPPGHAA 307 F EG C C H GDG R G DG D P P APPG Sbjct: 143 FNSEGGGCCTC--------HRGPPGPAGDGGRDGADGVDGTPGEIGPPGPP--APPG--- 189 Query: 308 LPDVH--LDGEVDGERPEGDG 364 PD H + E P GDG Sbjct: 190 -PDPHSLFPPQCPCEAPPGDG 209
>BTUB_PHOLL (Q7MYE3) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 619 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 370 LGAVSFWPLTVYFPVEMYIRQR 305 LG VSFW LTV +PV Y+ R Sbjct: 566 LGGVSFWDLTVSYPVTSYLTIR 587
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +2 Query: 212 DGARCGGDGHDEASDAEHPKADP--LRAPPGHAALPDVHLDGEVDGERPEGDGSQKS 376 DG+ GDG DEA+ E P P H +P+ L DG++ DG+ +S Sbjct: 2754 DGSDDCGDGSDEAAHCEGKTCGPSSFSCPGTHVCVPERWL---CDGDKDCADGADES 2807
>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1| (RalBP1-interacting protein 1) Length = 743 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +2 Query: 236 GHDEASDAEHPKADPLRAPPGHAALPDVHLDGEVDG 343 G +A HP A P R P A P VH + DG Sbjct: 521 GQQQAGVVAHPPAVPPRPQPSQAPGPSVHRPVDADG 556
>OPT1_ARATH (Q9FG72) Oligopeptide transporter 1 (AtOPT1)| Length = 755 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 382 VVGLLGAVSFWPLTVYFPVEMYIRQRGVP 296 ++GLL V FW L+ FP + +++Q VP Sbjct: 624 LIGLLAPVPFWYLSKKFPEKKWLKQIHVP 652
>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1587 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 207 LAMEPAAAAMDTMRHPTLSILRQIPCVLLPGTPRCLMYIS 326 LA PA M HP S+ Q+PC + G CL +++ Sbjct: 855 LAPRPADKCMPCSCHPQGSVSEQMPCDPVTGQCSCLPHVT 894
>SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +2 Query: 218 ARCGGDGHDEASDAEHPKADPLRAPPGHAALPDVHLDGEVDGE 346 AR GG+G DA PKADP A LP + ++G+ GE Sbjct: 775 ARMGGEGM--VVDAPWPKADPALAADDERVLP-IQINGKRRGE 814
>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1| (RalBP1-interacting protein 1) Length = 744 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +2 Query: 236 GHDEASDAEHPKADPLRAPPGHAALPDVHLDGEVDG 343 G +A HP A P R P A P VH + DG Sbjct: 522 GQQQAGVVAHPPAVPPRPQPSQAPGPAVHRPVDADG 557
>BTUB_SALTY (P37409) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 370 LGAVSFWPLTVYFPVEMYIRQRG 302 +G VS W LTV +PV ++ RG Sbjct: 561 MGGVSLWDLTVAYPVTSHLTVRG 583
>BTUB_SALTI (Q8Z314) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 370 LGAVSFWPLTVYFPVEMYIRQRG 302 +G VS W LTV +PV ++ RG Sbjct: 561 MGGVSLWDLTVAYPVTSHLTVRG 583
>BTUB_SALPA (Q5PK67) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 370 LGAVSFWPLTVYFPVEMYIRQRG 302 +G VS W LTV +PV ++ RG Sbjct: 561 MGGVSLWDLTVAYPVTSHLTVRG 583
>BTUB_SALCH (Q57H87) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 370 LGAVSFWPLTVYFPVEMYIRQRG 302 +G VS W LTV +PV ++ RG Sbjct: 561 MGGVSLWDLTVAYPVTSHLTVRG 583
>FBN2_HUMAN (P35556) Fibrillin-2 precursor| Length = 2911 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 135 GRGIGAGGANQPLNGLYTLSASITLAMEPAAAAMDTMRHPTLSILR 272 G G+GAGG + GL L+ +I + A ++ PT+S R Sbjct: 472 GAGVGAGGQGPIITGLTILNQTIDICKHHANLCLNGRCIPTVSSYR 517
>FBN2_MOUSE (Q61555) Fibrillin-2 precursor| Length = 2907 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 135 GRGIGAGGANQPLNGLYTLSASITLAMEPAAAAMDTMRHPTLSILR 272 G G+GAGG + GL L+ +I + A ++ PT+S R Sbjct: 466 GAGVGAGGQGPIITGLTILNQTIDICKHHANLCLNGRCIPTVSSYR 511 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,877,915 Number of Sequences: 219361 Number of extensions: 970774 Number of successful extensions: 2836 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2832 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
