ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic aci... 355 3e-95
2dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic aci... 353 1e-94
3gb|AY364467.1| Triticum monococcum cytosolic glutathione reducta... 190 1e-45
4gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, comp... 42 0.65
5gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, comp... 42 0.65
6gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 2.6
7emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 2.6
8dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 2.6

>dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic acid synthase 1,
            complete cds
          Length = 1357

 Score =  355 bits (179), Expect = 3e-95
 Identities = 195/199 (97%), Gaps = 1/199 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    caacaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatca 65
            ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1328 caacaatacccacgatttctgtacaaactgttccacagaaacttattactatcacaatca 1269

                                                                        
Query: 66   aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaac-gaactga 124
            |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1268 aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctagctgaactga 1209

                                                                        
Query: 125  aacaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacat 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 aacaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacat 1149

                               
Query: 185  tgcagggatcttgcttaca 203
            |||||||||||||||||||
Sbjct: 1148 tgcagggatcttgcttaca 1130



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>dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic acid synthase 2,
            complete cds
          Length = 1202

 Score =  353 bits (178), Expect = 1e-94
 Identities = 194/198 (97%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    caacaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatca 65
            ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1137 caacaatacccacgatttctgtacaaactgttccacagaaacttattactatcacaatca 1078

                                                                        
Query: 66   aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacgaactgaa 125
            |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1077 aatacgtacacc-tatcaccctttcaggtcaaatgccaagcgcagggctagcgaactgaa 1019

                                                                        
Query: 126  acaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacatt 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 acaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacatt 959

                              
Query: 186  gcagggatcttgcttaca 203
            ||||||||||||||||||
Sbjct: 958  gcagggatcttgcttaca 941



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>gb|AY364467.1| Triticum monococcum cytosolic glutathione reductase (grc1) mRNA,
            complete cds
          Length = 1806

 Score =  190 bits (96), Expect = 1e-45
 Identities = 174/198 (87%), Gaps = 9/198 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    acaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatcaaa 67
            ||||||||||||||||| |||||||||||||| |||||||||||| ||| ||   |||||
Sbjct: 1747 acaatacccacgatttctgtacaaactgttccacagaaacttatttctacca---tcaaa 1691

                                                                        
Query: 68   tacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacgaactgaaac 127
            |||    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 1690 tac----accgtatcaccctttcaggtcaaatgccaagcacagagctaacgaactgaaac 1635

                                                                        
Query: 128  aagagtccacgtct--acagttcccgtcgccgcaccagtataattttcgtccaaaacatt 185
            |||  || |||| |  ||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 1634 aagcatctacgtgtacacagttcccttcgccacaccggtataattttggtccaaaacatt 1575

                              
Query: 186  gcagggatcttgcttaca 203
            ||||||||||| ||||||
Sbjct: 1574 gcagggatcttccttaca 1557



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>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence
          Length = 197019

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   ctttcaggtcaaatgccaagc 106
            |||||||||||||||||||||
Sbjct: 4589 ctttcaggtcaaatgccaagc 4569



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>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence
          Length = 203773

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    ctttcaggtcaaatgccaagc 106
             |||||||||||||||||||||
Sbjct: 77631 ctttcaggtcaaatgccaagc 77611



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 140     ctacagttcccgtcgccgcaccag 163
               |||||||||||| |||||||||||
Sbjct: 3522583 ctacagttcccgccgccgcaccag 3522606



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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the
             5' end of the SLC24A2 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
             a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaatgccaagcgcagggcta 115
             ||||||||||||||||||||
Sbjct: 39822 aaatgccaagcgcagggcta 39803



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    ctacagttcccgtcgccgcaccag 163
              |||||||||||| |||||||||||
Sbjct: 473415 ctacagttcccgccgccgcaccag 473438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,185,352
Number of Sequences: 3902068
Number of extensions: 1185352
Number of successful extensions: 73657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73576
Number of HSP's gapped (non-prelim): 78
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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