Clone Name | rbart43d10 |
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Clone Library Name | barley_pub |
>dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic acid synthase 1, complete cds Length = 1357 Score = 355 bits (179), Expect = 3e-95 Identities = 195/199 (97%), Gaps = 1/199 (0%) Strand = Plus / Minus Query: 6 caacaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatca 65 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 1328 caacaatacccacgatttctgtacaaactgttccacagaaacttattactatcacaatca 1269 Query: 66 aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaac-gaactga 124 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 1268 aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctagctgaactga 1209 Query: 125 aacaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacat 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1208 aacaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacat 1149 Query: 185 tgcagggatcttgcttaca 203 ||||||||||||||||||| Sbjct: 1148 tgcagggatcttgcttaca 1130
>dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic acid synthase 2, complete cds Length = 1202 Score = 353 bits (178), Expect = 1e-94 Identities = 194/198 (97%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 6 caacaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatca 65 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 1137 caacaatacccacgatttctgtacaaactgttccacagaaacttattactatcacaatca 1078 Query: 66 aatacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacgaactgaa 125 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1077 aatacgtacacc-tatcaccctttcaggtcaaatgccaagcgcagggctagcgaactgaa 1019 Query: 126 acaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacatt 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1018 acaagagtccacgtctacagttcccgtcgccgcaccagtataattttcgtccaaaacatt 959 Query: 186 gcagggatcttgcttaca 203 |||||||||||||||||| Sbjct: 958 gcagggatcttgcttaca 941
>gb|AY364467.1| Triticum monococcum cytosolic glutathione reductase (grc1) mRNA, complete cds Length = 1806 Score = 190 bits (96), Expect = 1e-45 Identities = 174/198 (87%), Gaps = 9/198 (4%) Strand = Plus / Minus Query: 8 acaatacccacgatttccgtacaaactgttccgcagaaacttattactatcacaatcaaa 67 ||||||||||||||||| |||||||||||||| |||||||||||| ||| || ||||| Sbjct: 1747 acaatacccacgatttctgtacaaactgttccacagaaacttatttctacca---tcaaa 1691 Query: 68 tacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacgaactgaaac 127 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 1690 tac----accgtatcaccctttcaggtcaaatgccaagcacagagctaacgaactgaaac 1635 Query: 128 aagagtccacgtct--acagttcccgtcgccgcaccagtataattttcgtccaaaacatt 185 ||| || |||| | ||||||||| ||||| |||| |||||||||| |||||||||||| Sbjct: 1634 aagcatctacgtgtacacagttcccttcgccacaccggtataattttggtccaaaacatt 1575 Query: 186 gcagggatcttgcttaca 203 ||||||||||| |||||| Sbjct: 1574 gcagggatcttccttaca 1557
>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence Length = 197019 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 ctttcaggtcaaatgccaagc 106 ||||||||||||||||||||| Sbjct: 4589 ctttcaggtcaaatgccaagc 4569
>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence Length = 203773 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 ctttcaggtcaaatgccaagc 106 ||||||||||||||||||||| Sbjct: 77631 ctttcaggtcaaatgccaagc 77611
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ctacagttcccgtcgccgcaccag 163 |||||||||||| ||||||||||| Sbjct: 3522583 ctacagttcccgccgccgcaccag 3522606
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aaatgccaagcgcagggcta 115 |||||||||||||||||||| Sbjct: 39822 aaatgccaagcgcagggcta 39803
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ctacagttcccgtcgccgcaccag 163 |||||||||||| ||||||||||| Sbjct: 473415 ctacagttcccgccgccgcaccag 473438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,185,352 Number of Sequences: 3902068 Number of extensions: 1185352 Number of successful extensions: 73657 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73576 Number of HSP's gapped (non-prelim): 78 length of query: 203 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 181 effective length of database: 17,147,199,772 effective search space: 3103643158732 effective search space used: 3103643158732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)