>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ART 241
           G   W  L+LK P    +  AV+YK+  R+KL   GY IVG IGDQWSD+LG   G +RT
Sbjct: 184 GYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRT 243

Query: 240 FKLPDPM 220
           FKLP+P+
Sbjct: 244 FKLPNPL 250

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGF-KGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTF 238
           G   W  L+LK P     +A++YKS  R+ L   GY IVG IGDQWSD+LG   G +RTF
Sbjct: 185 GFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTF 244

Query: 237 KLPDPM 220
           KLP+PM
Sbjct: 245 KLPNPM 250

>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 32/64 (50%), Positives = 42/64 (65%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKL 232
           G++ W +L+LK  G K + V YKS  R  L   GY IVGNIGDQW+D++    G R FKL
Sbjct: 203 GVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKL 261

Query: 231 PDPM 220
           P+P+
Sbjct: 262 PNPL 265

>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ART 241
           G   W  L+LK P    +  AV+YK+  R+KL   GY IVG IGDQWSD+LG   G +RT
Sbjct: 181 GYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRT 240

Query: 240 FKLPDP 223
           FKLP+P
Sbjct: 241 FKLPNP 246

>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGFKG-SAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFK 235
           G   W  L+L+     G +A TYKS  R  + + G+ IVGN GDQWSD+LG+    R+FK
Sbjct: 187 GFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFK 246

Query: 234 LPDPM 220
           LP+PM
Sbjct: 247 LPNPM 251

>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 31/64 (48%), Positives = 41/64 (64%)
 Frame = -1

Query: 411 GISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKL 232
           G++ W +L+LK  G     V YKS  R+ L   GY IVGNIGDQW+D++    G R FKL
Sbjct: 198 GVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKL 256

Query: 231 PDPM 220
           P+P+
Sbjct: 257 PNPL 260

>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 238

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 SMPGRAIGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 312
           S+ G A GG  D     H   + +G GT+ R+ED+   +A +  D +P
Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163

>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 238

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 SMPGRAIGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 312
           S+ G A GG  D     H   + +G GT+ R+ED+   +A +  D +P
Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163

>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 238

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 SMPGRAIGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 312
           S+ G A GG  D     H   + +G GT+ R+ED+   +A +  D +P
Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163

>YGFT_ECOLI (Q46820) Hypothetical protein ygfT|
          Length = 639

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 286 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRD 408
           AD+  +D PGV+Q LP   L  H R L  GL + E +P  D
Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTD 448

>MURB_RALSO (Q8XWC4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +1

Query: 130 NMHITKSIE---LIREINGSMPGRA-IGGLADVVHGVGQLEGAGTLWRAEDVAPLVADVT 297
           N+ +T+  +   L+ EI G   GRA + G A  VH V    GAG  W       LVA   
Sbjct: 56  NIVLTRDFDGLVLLMEIPGVQVGRATLDGRA--VHTV--TAGAGESWHG-----LVARTV 106

Query: 298 DDDIPGVLQLLPLAGLVG 351
            D +PG+  L  + G VG
Sbjct: 107 ADGLPGLENLALIPGTVG 124

>END4_STRCO (Q9S2N2) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 294

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 139 ITKSIELIREINGSMPGRAIGGLADVVH---GVGQLEGAGTLWRA-EDVAPLVADVTDDD 306
           + +S+E +R  +    GRAIG L  VVH     G  E    L +  E + PL+ ++T DD
Sbjct: 93  VERSVESLR--HSLRRGRAIGALGVVVHTGSATGGRERPVALKQVREHMLPLLDELTHDD 150

Query: 307 IPGVL 321
            P +L
Sbjct: 151 DPYLL 155

>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative|
           secreted protein ZSIG13)
          Length = 383

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 378 QPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 253
           QPG  GS V  +  +RQ+ +    +I    G QW D+ G+P+
Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQ 353

>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)|
          Length = 212

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 294 NIGDQWSDILGAPEGARTFKLPD 226
           +IGD WS+ILG+    R F+L D
Sbjct: 38  SIGDAWSEILGSMSKERAFELLD 60

>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 345

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +1

Query: 106 NWGLII*RNMHITKSIELIREINGSMPGRAIGGLADVVHGVGQLEGAGTLWRAEDVAPLV 285
           NWG+          S++++RE++G +P  A GGL   + G   +     ++         
Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDGAKAIRMGANIFGLAGQFLKA 304

Query: 286 ADVTDDDIPGVLQLL 330
           AD ++  +   +QL+
Sbjct: 305 ADTSESLLSEEVQLI 319

>CRGM3_CYPCA (P28022) Gamma crystallin M3 (Gamma-M3)|
          Length = 173

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 390 LLLKQPGFKGSAVTYKSGERQKLQDAGY 307
           L+ +QP ++G  V ++ GE +  +D GY
Sbjct: 131 LMYEQPHYRGRIVYFRPGEYRSFRDMGY 158

>REC8L_MOUSE (Q8C5S7) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)|
          Length = 591

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 235 LEGAGTLWRAEDVAPLVADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRD 408
           LEGAG +      AP   +   + +PG  Q+ P    V      EPG L  EV PP++
Sbjct: 264 LEGAGLVSALSPPAPAQVEGIQEALPG--QVFPPE--VQKMTGWEPGALLTEVTPPQE 317

>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1133

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 218 YMGSGSLKVRAPSGAPRMSLHWSPMLPTMTY 310
           Y G+G ++  AP GAP  S++ S   P  T+
Sbjct: 890 YQGAGPMQAMAPQGAPTKSINISDYSPYGTH 920

>KPYK1_SYNY3 (Q55863) Pyruvate kinase 1 (EC 2.7.1.40) (PK 1)|
          Length = 483

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 226 VGQLEGAGTLWRAEDVAPLVADVTDDDIPGVLQL----LPLAGLVGHRRALEPGLLQQEV 393
           +GQL G     R  +   LV     D  PG + +    L     VG R  L+ GLL+ +V
Sbjct: 88  IGQLPGGEKQLREGEKVSLVPVEIGDRHPGAVGIDYPHLATEAKVGERILLDDGLLEMKV 147

Query: 394 HPPRDP 411
              +DP
Sbjct: 148 VSIQDP 153

>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
            polymerase II termination factor) (Transcription release
            factor 2)
          Length = 1184

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 253  GCPHLQAARPHVLHRLGRLW-LGRACCH 173
            GCP   + RP  +H L +L  L + CCH
Sbjct: 924  GCPAADSQRPSTVHVLSQLLRLRQCCCH 951

>CTR9_YEAST (P89105) Protein CTR9|
          Length = 1077

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 238 QAARPHVLHRLGRLWLGRA 182
           +  RPH+L+ LGR W  RA
Sbjct: 764 EKTRPHILNLLGRAWYARA 782

>YCF2_OENVI (P31569) Protein ycf2 (Fragment)|
          Length = 630

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +1

Query: 196 IGGLADVVHGVGQLEGA--GTLWRAEDVAPLVADV--TDDDIPG 315
           + GL+D+VHG+ +LEGA  G+    E+V     +V  T++++ G
Sbjct: 159 VHGLSDIVHGLLELEGALVGSSPTEEEVEGTEEEVEGTEEEVEG 202

>HIS4_NEIG1 (Q5FA22) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 245

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 145 KSIELIREINGSMPGRAIGGLADVVHGVGQLEGAGTLWRAEDVAPLVADVTDDDIPGVL 321
           K+ +L+RE   + PGR I GL D   G+  ++G  T+     V  L     DD +  ++
Sbjct: 110 KNPDLVREACKAFPGRIIVGL-DAKDGMAAIDGWATV-TGHHVIDLAKRFEDDGVNSII 166

>YCF2_OENPI (P31568) Protein ycf2 (Fragment)|
          Length = 721

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +1

Query: 196 IGGLADVVHGVGQLEGA--GTLWRAEDVAPLVADV--TDDDIPG 315
           + GL+D+VHG+ +LEGA  G+    E+V     +V  T++++ G
Sbjct: 159 VHGLSDIVHGLLELEGALVGSSPTEEEVEGTEEEVEGTEEEVEG 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,270,309
Number of Sequences: 219361
Number of extensions: 1036069
Number of successful extensions: 2735
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2732
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)