ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF3X_HUMAN (O75153) Putative eukaryotic translation initiation f... 28 7.2
2EXO70_CANGA (Q6FJW2) Exocyst complex protein EXO70 28 9.4
3ACCD_SPIOL (Q9M3L7) Acetyl-coenzyme A carboxylase carboxyl trans... 28 9.4

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 176 QIHAQHARTQLVSIDPSVSWTMNDPPSLNFL 268
           +IH +H R  L S+DPS ++   D  SL+FL
Sbjct: 129 RIHVRHVRDLLKSLDPSDAFNGVDCNSLSFL 159



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>EXO70_CANGA (Q6FJW2) Exocyst complex protein EXO70|
          Length = 623

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  RHDSTVEHRGILSHLKPILTGGEKK 95
           RH    E  GIL HLK ++T  E++
Sbjct: 119 RHTENAEFHGILKHLKEMITSSEEQ 143



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>ACCD_SPIOL (Q9M3L7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           beta (EC 6.4.1.2) (ACCase beta chain)
          Length = 522

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 71  HLNRGRKEREQKWTFNNKRRRSEEEAASKK***PIQIHAQHARTQLVSIDPSVSWTMNDP 250
           H NRG++   +KW FN+   + E E            H       + S+ P  + +  + 
Sbjct: 23  HANRGQESSMKKWWFNSMLSKKELE------------HGCGLSKSMDSLGPIENTSTKED 70

Query: 251 PSLN 262
           PSLN
Sbjct: 71  PSLN 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,905,300
Number of Sequences: 219361
Number of extensions: 691617
Number of successful extensions: 1897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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